Wall clock time and date at job start Tue Mar 31 2020 13:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00491 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00513 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00159 * 3 2 1 7 7 C 1.37873 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.35950 * 116.99802 * 179.97438 * 10 9 7 12 12 C 1.38741 * 119.98523 * 359.72987 * 11 10 9 13 13 C 1.38075 * 120.01518 * 179.72505 * 12 11 10 14 14 C 1.38867 * 119.98127 * 0.56743 * 13 12 11 15 15 N 1.40155 * 120.01318 * 179.72771 * 14 13 12 16 16 N 1.39879 * 125.47757 * 145.00922 * 15 14 13 17 17 C 1.30310 * 110.09311 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.08687 * 180.02562 * 17 16 15 19 19 N 1.46900 * 109.46966 * 89.97820 * 18 17 16 20 20 C 1.45938 * 107.82234 * 359.97438 * 17 16 15 21 21 C 1.39940 * 134.03447 * 180.02562 * 20 17 16 22 22 C 1.36482 * 119.63218 * 179.97438 * 21 20 17 23 23 C 1.38955 * 120.63250 * 0.02562 * 22 21 20 24 24 C 1.36620 * 120.80908 * 0.02562 * 23 22 21 25 25 C 1.37267 * 125.47809 * 324.69198 * 15 14 13 26 26 C 1.38866 * 119.97209 * 359.70517 * 14 13 12 27 27 C 1.38068 * 119.98540 * 0.02562 * 26 14 13 28 28 H 0.96992 * 120.00510 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.07998 * 119.99149 * 359.97438 * 12 11 10 32 32 H 1.07994 * 120.00610 * 180.27385 * 13 12 11 33 33 H 1.09003 * 109.46900 * 209.96980 * 18 17 16 34 34 H 1.08996 * 109.47557 * 329.97462 * 18 17 16 35 35 H 1.00901 * 110.99917 * 179.97438 * 19 18 17 36 36 H 1.00903 * 110.99618 * 303.95281 * 19 18 17 37 37 H 1.08002 * 120.18243 * 359.97438 * 21 20 17 38 38 H 1.08001 * 119.68322 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.59877 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.07582 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.01223 * 180.02562 * 26 14 13 42 42 H 1.08002 * 119.99839 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 8 3.9880 -2.5412 -0.0010 11 6 5.3358 -2.7192 -0.0020 12 6 6.1806 -1.6186 -0.0088 13 6 7.5495 -1.7987 -0.0041 14 6 8.0807 -3.0817 -0.0045 15 7 9.4702 -3.2652 -0.0055 16 7 10.1533 -4.2967 0.6472 17 6 11.4358 -4.1808 0.4476 18 6 12.5042 -5.0980 0.9845 19 7 12.7455 -6.1834 0.0244 20 6 11.6531 -3.0052 -0.3895 21 6 12.7897 -2.3885 -0.9242 22 6 12.6518 -1.2677 -1.6907 23 6 11.3943 -0.7337 -1.9443 24 6 10.2701 -1.3174 -1.4326 25 6 10.3790 -2.4652 -0.6522 26 6 7.2346 -4.1828 -0.0035 27 6 5.8659 -4.0014 -0.0025 28 1 -0.4850 0.8399 0.0004 29 1 3.8752 -0.6801 0.8888 30 1 3.8745 -0.6799 -0.8912 31 1 5.7673 -0.6209 -0.0136 32 1 8.2069 -0.9419 -0.0049 33 1 13.4250 -4.5344 1.1346 34 1 12.1772 -5.5196 1.9349 35 1 13.4588 -6.8123 0.3615 36 1 11.8920 -6.6808 -0.1810 37 1 13.7707 -2.7971 -0.7313 38 1 13.5286 -0.7908 -2.1034 39 1 11.3046 0.1541 -2.5528 40 1 9.2986 -0.8921 -1.6369 41 1 7.6470 -5.1810 -0.0034 42 1 5.2076 -4.8576 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167698022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:58 Heat of formation + Delta-G solvation = 61.877056 kcal Electronic energy + Delta-G solvation = -25506.400013 eV Core-core repulsion = 21838.164530 eV Total energy + Delta-G solvation = -3668.235483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.63299 -41.02980 -38.80788 -38.10683 -36.09683 -35.02423 -33.64832 -32.32726 -31.64333 -30.94476 -30.51448 -29.03448 -26.44192 -25.10473 -24.23146 -23.89579 -22.92590 -22.38031 -20.69936 -19.63041 -18.93984 -18.55635 -17.98683 -17.33222 -16.87478 -16.70725 -16.45348 -16.23516 -15.98359 -15.71997 -15.62402 -15.19969 -14.97919 -14.85006 -14.42402 -14.14677 -14.06300 -13.96814 -13.75388 -13.25286 -13.10940 -13.08034 -12.85382 -12.77697 -12.28786 -12.12519 -11.99457 -11.88782 -11.78299 -11.46414 -11.21847 -10.91650 -10.23373 -9.76856 -9.68045 -9.61045 -8.51833 -8.45047 -6.56391 -0.27117 0.12908 0.15722 0.64604 1.17371 1.30631 1.33624 1.36457 1.43441 2.23003 2.44713 2.53627 2.82232 2.87156 3.30441 3.38138 3.60141 3.67973 3.76150 3.84455 4.01492 4.06878 4.22333 4.23039 4.35877 4.40809 4.47411 4.50326 4.56703 4.62375 4.74581 4.77911 4.84459 4.94929 5.05158 5.11910 5.17462 5.31903 5.37767 5.44726 5.52312 5.57551 5.88645 5.93839 6.05656 6.14951 6.47945 6.51180 6.55362 6.65862 7.07345 8.71393 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019897 B = 0.002692 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.938750 B =10397.168530 C =11574.621073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.556 4.556 8 H 0.036 0.964 9 C 0.179 3.821 10 O -0.326 6.326 11 C 0.114 3.886 12 C -0.192 4.192 13 C -0.087 4.087 14 C 0.105 3.895 15 N -0.359 5.359 16 N -0.276 5.276 17 C 0.106 3.894 18 C 0.148 3.852 19 N -0.846 5.846 20 C -0.180 4.180 21 C -0.036 4.036 22 C -0.155 4.155 23 C -0.064 4.064 24 C -0.162 4.162 25 C 0.099 3.901 26 C -0.074 4.074 27 C -0.140 4.140 28 H 0.276 0.724 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.364 0.636 36 H 0.343 0.657 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.333 -4.158 -1.418 33.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.770 3.230 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.164 1.164 7 C -0.593 4.593 8 H 0.054 0.946 9 C 0.105 3.895 10 O -0.240 6.240 11 C 0.067 3.933 12 C -0.211 4.211 13 C -0.108 4.108 14 C 0.014 3.986 15 N -0.140 5.140 16 N -0.088 5.088 17 C -0.072 4.072 18 C 0.015 3.985 19 N -0.380 5.380 20 C -0.188 4.188 21 C -0.056 4.056 22 C -0.175 4.175 23 C -0.084 4.084 24 C -0.183 4.183 25 C -0.012 4.012 26 C -0.094 4.094 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 32.197 -4.298 -1.331 32.510 hybrid contribution -0.723 0.446 0.479 0.975 sum 31.474 -3.853 -0.851 31.721 Atomic orbital electron populations 1.69998 1.08240 1.29136 1.49904 1.25778 0.95821 1.03303 0.93044 0.85691 0.79696 0.77429 0.80161 1.17937 1.19641 1.16412 1.21004 0.90034 0.94418 1.53868 0.94595 1.20738 0.93779 0.78263 0.96756 1.86124 1.18363 1.32215 1.87249 1.19593 0.83384 0.95044 0.95253 1.21268 0.93195 0.99119 1.07517 1.20830 0.94481 0.95608 0.99875 1.17366 0.79022 0.94441 1.07814 1.45236 1.03205 1.22666 1.42881 1.76595 1.06878 1.08701 1.16651 1.24073 0.91851 0.95369 0.95927 1.20187 0.94256 0.91144 0.92881 1.58613 1.15043 1.16669 1.47651 1.20010 0.93693 0.98910 1.06166 1.20710 0.97109 0.93952 0.93840 1.21135 0.98412 0.97093 1.00813 1.21185 0.91383 0.99329 0.96486 1.20253 1.01133 0.95237 1.01692 1.19304 0.89437 0.95231 0.97231 1.20749 0.91300 0.98521 0.98827 1.20463 0.94650 0.95213 1.05550 0.91444 0.95238 0.95162 0.84045 0.83574 0.86438 0.92670 0.81972 0.84475 0.82717 0.82206 0.82486 0.85465 0.83720 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.96 21.45 0.30 -57.13 16 2 C 0.02 1.14 5.47 84.65 0.46 1.61 16 3 Si 0.95 41.40 27.47 68.60 1.88 43.28 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 7 C -0.56 -33.03 9.99 25.60 0.26 -32.78 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 C 0.18 8.72 3.56 71.24 0.25 8.97 16 10 O -0.33 -15.40 10.12 -92.99 -0.94 -16.34 16 11 C 0.11 4.40 6.69 22.51 0.15 4.55 16 12 C -0.19 -6.51 9.03 22.35 0.20 -6.31 16 13 C -0.09 -2.61 8.76 22.38 0.20 -2.42 16 14 C 0.11 3.26 6.38 38.11 0.24 3.50 16 15 N -0.36 -10.62 3.77 -180.37 -0.68 -11.30 16 16 N -0.28 -7.69 12.14 -43.66 -0.53 -8.22 16 17 C 0.11 2.34 6.94 44.78 0.31 2.65 16 18 C 0.15 1.95 7.38 85.56 0.63 2.58 16 19 N -0.85 -9.88 9.61 -190.01 -1.83 -11.70 16 20 C -0.18 -4.04 6.33 -20.23 -0.13 -4.17 16 21 C -0.04 -0.56 10.07 22.27 0.22 -0.34 16 22 C -0.16 -2.05 9.97 22.03 0.22 -1.83 16 23 C -0.06 -0.99 9.96 22.06 0.22 -0.77 16 24 C -0.16 -3.53 9.06 22.13 0.20 -3.33 16 25 C 0.10 2.61 6.60 39.17 0.26 2.87 16 26 C -0.07 -2.25 9.73 22.38 0.22 -2.04 16 27 C -0.14 -4.65 9.98 22.35 0.22 -4.43 16 28 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.03 1.38 6.73 -2.38 -0.02 1.36 16 30 H 0.03 1.38 7.07 -2.39 -0.02 1.37 16 31 H 0.14 4.64 6.29 -2.91 -0.02 4.62 16 32 H 0.15 3.74 6.30 -2.91 -0.02 3.72 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.36 2.21 9.08 -89.69 -0.81 1.39 16 36 H 0.34 4.57 8.99 -89.69 -0.81 3.76 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.13 2.70 6.45 -2.91 -0.02 2.68 16 41 H 0.15 3.96 8.05 -2.91 -0.02 3.94 16 42 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -74.14 357.55 1.75 -72.39 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.59 Total: 20.69 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 4.14 Total: -31.66 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.74 Total: -88.35 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.94 Total: -16.34 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.28 kcal Total: -74.14 1.75 -72.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167698022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.264 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds