Wall clock time and date at job start Tue Mar 31 2020 14:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47339 * 89.99813 * 3 2 1 5 5 H 1.48496 * 109.47222 * 209.99711 * 3 2 1 6 6 H 1.48506 * 109.47271 * 329.99893 * 3 2 1 7 7 C 1.39951 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99342 * 155.20078 * 7 2 1 9 9 C 1.41031 * 120.00379 * 335.20134 * 7 2 1 10 10 C 1.41057 * 120.70113 * 329.61542 * 9 7 2 11 11 C 1.37969 * 118.26959 * 179.71000 * 10 9 7 12 12 C 1.38727 * 119.59686 * 0.58979 * 11 10 9 13 13 N 1.31923 * 121.44087 * 359.66951 * 12 11 10 14 14 C 1.32201 * 121.88007 * 0.03094 * 13 12 11 15 15 N 1.38711 * 119.89113 * 180.02562 * 14 13 12 16 16 C 1.37094 * 125.12091 * 130.70380 * 15 14 13 17 17 C 1.34188 * 109.92335 * 179.87441 * 16 15 14 18 18 C 1.50698 * 126.45797 * 180.14059 * 17 16 15 19 19 C 1.52998 * 109.47639 * 265.27761 * 18 17 16 20 20 N 1.46892 * 109.47879 * 179.97438 * 19 18 17 21 21 C 1.46626 * 107.09441 * 0.37331 * 17 16 15 22 22 C 1.39590 * 133.89360 * 179.79787 * 21 17 16 23 23 C 1.38147 * 119.60372 * 180.02562 * 22 21 17 24 24 O 1.35974 * 119.87269 * 179.97438 * 23 22 21 25 25 C 1.39212 * 120.25443 * 359.95686 * 23 22 21 26 26 C 1.37761 * 120.59857 * 0.02562 * 25 23 22 27 27 C 1.38220 * 125.11423 * 311.00396 * 15 14 13 28 28 H 0.97001 * 119.99698 * 174.18978 * 1 2 3 29 29 H 1.08002 * 120.86785 * 359.97438 * 10 9 7 30 30 H 1.07998 * 120.19671 * 180.25985 * 11 10 9 31 31 H 1.08002 * 119.27866 * 179.69424 * 12 11 10 32 32 H 1.08002 * 125.04250 * 359.97438 * 16 15 14 33 33 H 1.09003 * 109.47178 * 25.27349 * 18 17 16 34 34 H 1.09006 * 109.47498 * 145.27410 * 18 17 16 35 35 H 1.09005 * 109.46967 * 300.00231 * 19 18 17 36 36 H 1.09006 * 109.46963 * 59.99320 * 19 18 17 37 37 H 1.00901 * 111.00596 * 179.97438 * 20 19 18 38 38 H 1.00907 * 110.99904 * 303.95523 * 20 19 18 39 39 H 1.08001 * 120.19632 * 359.97438 * 22 21 17 40 40 H 0.96698 * 113.99616 * 269.98061 * 24 23 22 41 41 H 1.08004 * 119.70345 * 180.02562 * 25 23 22 42 42 H 1.08005 * 120.00197 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 1.4001 5 1 3.5401 1.4402 -0.7000 6 1 1.4400 2.6527 -0.7001 7 6 2.0083 -1.2120 0.0005 8 1 3.0136 -1.2552 -0.3918 9 6 1.4008 -2.3769 0.5133 10 6 0.4490 -2.2955 1.5512 11 6 -0.1184 -3.4662 2.0108 12 6 0.2663 -4.6780 1.4558 13 7 1.1619 -4.7387 0.4891 14 6 1.7376 -3.6531 0.0014 15 7 2.6740 -3.7648 -1.0158 16 6 2.6703 -3.0330 -2.1751 17 6 3.7143 -3.3848 -2.9412 18 6 4.0674 -2.8142 -4.2905 19 6 3.4752 -3.6988 -5.3894 20 7 3.8188 -3.1422 -6.7047 21 6 4.4436 -4.4332 -2.2209 22 6 5.5879 -5.1825 -2.4999 23 6 6.0288 -6.1206 -1.5867 24 8 7.1425 -6.8538 -1.8531 25 6 5.3375 -6.3180 -0.3946 26 6 4.2073 -5.5836 -0.1095 27 6 3.7479 -4.6350 -1.0158 28 1 -0.4850 -0.8358 -0.0850 29 1 0.1685 -1.3413 1.9722 30 1 -0.8535 -3.4396 2.8015 31 1 -0.1775 -5.5916 1.8229 32 1 1.9370 -2.2832 -2.4327 33 1 3.6606 -1.8066 -4.3767 34 1 5.1516 -2.7786 -4.3976 35 1 3.8819 -4.7064 -5.3033 36 1 2.3910 -3.7343 -5.2823 37 1 3.4391 -3.7093 -7.4478 38 1 3.5084 -2.1854 -6.7848 39 1 6.1248 -5.0302 -3.4245 40 1 6.9658 -7.6813 -2.3213 41 1 5.6903 -7.0535 0.3132 42 1 3.6787 -5.7443 0.8185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167983550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:16 Heat of formation + Delta-G solvation = 17.982383 kcal Electronic energy + Delta-G solvation = -26799.967927 eV Core-core repulsion = 23129.829028 eV Total energy + Delta-G solvation = -3670.138899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58009 -40.43201 -39.30084 -36.70241 -36.46691 -36.25110 -33.98415 -32.52092 -31.57066 -30.84537 -29.26520 -28.41832 -27.06055 -24.41028 -23.74964 -23.55853 -23.10562 -22.10151 -20.47560 -20.05931 -19.00406 -18.83076 -17.39961 -17.19151 -16.78188 -16.53022 -16.30574 -16.05917 -15.77358 -15.61935 -15.28847 -15.07492 -14.84462 -14.65239 -14.53074 -14.16644 -13.80511 -13.65687 -13.49324 -13.37507 -13.04222 -12.85743 -12.73149 -12.52960 -12.19003 -12.05757 -11.98252 -11.69863 -11.26935 -11.21936 -10.67519 -10.47680 -10.30588 -9.88577 -9.60599 -9.38399 -9.03411 -8.39967 -6.68381 0.06496 0.27296 0.62731 0.72086 1.46956 1.55238 1.74766 1.75119 1.94468 2.20998 2.51898 2.78244 3.25173 3.33080 3.65315 3.71143 3.82239 4.01873 4.15683 4.19004 4.23127 4.34733 4.39974 4.44497 4.50286 4.57395 4.64357 4.69456 4.78054 4.83475 4.95486 5.02460 5.18493 5.22480 5.27112 5.41602 5.43518 5.53477 5.54105 5.72737 5.75862 5.86957 5.90803 6.21800 6.23193 6.26042 6.56419 6.64020 6.74958 6.97067 7.36295 7.83819 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.005191 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.307895 B = 5392.181884 C = 6980.657338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.017 3.983 3 Si 1.110 2.890 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.039 3.961 10 C -0.185 4.185 11 C -0.125 4.125 12 C -0.024 4.024 13 N -0.476 5.476 14 C 0.166 3.834 15 N -0.397 5.397 16 C 0.078 3.922 17 C -0.182 4.182 18 C -0.028 4.028 19 C 0.076 3.924 20 N -0.852 5.852 21 C -0.097 4.097 22 C -0.100 4.100 23 C 0.076 3.924 24 O -0.500 6.500 25 C -0.127 4.127 26 C -0.112 4.112 27 C 0.072 3.928 28 H 0.285 0.715 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.018 0.982 37 H 0.350 0.650 38 H 0.347 0.653 39 H 0.145 0.855 40 H 0.405 0.595 41 H 0.149 0.851 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -5.138 -6.441 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.202 4.202 3 Si 0.927 3.073 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.091 0.909 9 C 0.032 3.968 10 C -0.212 4.212 11 C -0.144 4.144 12 C -0.184 4.184 13 N -0.185 5.185 14 C -0.062 4.062 15 N -0.073 5.073 16 C -0.047 4.047 17 C -0.189 4.189 18 C -0.066 4.066 19 C -0.055 4.055 20 N -0.383 5.383 21 C -0.102 4.102 22 C -0.119 4.119 23 C 0.030 3.970 24 O -0.312 6.312 25 C -0.147 4.147 26 C -0.133 4.133 27 C -0.034 4.034 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.263 0.737 41 H 0.167 0.833 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.071 -3.956 -6.004 9.411 hybrid contribution -1.943 -1.241 0.497 2.359 sum 4.128 -5.197 -5.507 8.624 Atomic orbital electron populations 1.70588 1.08603 1.33284 1.29106 1.28278 0.95475 1.06791 0.89688 0.83058 0.74966 0.70112 0.79164 1.18828 1.18850 1.18929 1.20533 1.02338 0.94143 1.37038 0.90921 1.18485 0.93606 0.92642 0.92048 1.21484 1.02639 0.98350 0.98699 1.22005 0.99383 0.92842 1.00220 1.22191 0.99837 0.97966 0.98367 1.66518 1.07991 1.32486 1.11554 1.18198 1.00563 0.90378 0.97103 1.40548 1.20108 1.31908 1.14783 1.21681 1.00414 0.97737 0.84897 1.20250 0.97586 1.01963 0.99103 1.19762 1.01566 0.97914 0.87343 1.21613 0.96791 0.98423 0.88721 1.58698 1.68347 1.07718 1.03556 1.19063 0.97165 0.99824 0.94193 1.20793 0.94472 0.96529 1.00109 1.17989 0.88907 0.96297 0.93765 1.84804 1.28279 1.38024 1.80126 1.21160 0.94078 1.01025 0.98432 1.19984 0.97937 0.96710 0.98621 1.18798 0.90297 0.96208 0.98069 0.90286 0.87030 0.83576 0.81818 0.82767 0.91008 0.90223 0.91520 0.96421 0.83662 0.84042 0.83777 0.73697 0.83336 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.51 12.52 21.83 0.27 -38.23 16 2 C 0.02 0.78 4.95 85.25 0.42 1.20 16 3 Si 1.11 40.08 30.00 68.60 2.06 42.14 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.51 -25.43 7.19 23.37 0.17 -25.26 16 8 H 0.07 3.74 7.02 -2.91 -0.02 3.72 16 9 C 0.04 1.95 5.18 -21.08 -0.11 1.84 16 10 C -0.19 -8.64 8.12 22.90 0.19 -8.46 16 11 C -0.12 -5.02 10.08 22.32 0.23 -4.79 16 12 C -0.02 -0.99 11.17 84.80 0.95 -0.04 16 13 N -0.48 -22.48 10.09 -191.12 -1.93 -24.40 16 14 C 0.17 8.22 6.81 133.83 0.91 9.13 16 15 N -0.40 -18.45 2.70 -342.96 -0.92 -19.37 16 16 C 0.08 3.32 9.04 82.95 0.75 4.07 16 17 C -0.18 -6.62 5.57 -18.60 -0.10 -6.73 16 18 C -0.03 -0.78 6.00 29.85 0.18 -0.60 16 19 C 0.08 1.88 6.77 86.30 0.58 2.46 16 20 N -0.85 -16.90 9.62 -186.72 -1.80 -18.70 16 21 C -0.10 -3.70 6.34 -20.18 -0.13 -3.83 16 22 C -0.10 -3.20 10.04 22.57 0.23 -2.97 16 23 C 0.08 2.29 6.70 22.48 0.15 2.44 16 24 O -0.50 -12.02 13.50 -93.26 -1.26 -13.28 16 25 C -0.13 -4.09 9.95 22.39 0.22 -3.86 16 26 C -0.11 -4.41 9.85 22.34 0.22 -4.19 16 27 C 0.07 3.09 6.70 38.90 0.26 3.35 16 28 H 0.28 14.41 6.88 -92.71 -0.64 13.77 16 29 H 0.11 5.27 6.97 -2.91 -0.02 5.25 16 30 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.16 5.51 8.06 -2.91 -0.02 5.48 16 32 H 0.15 6.60 7.62 -2.91 -0.02 6.58 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.35 5.61 9.08 -89.69 -0.81 4.80 16 38 H 0.35 6.06 8.99 -89.69 -0.81 5.26 16 39 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.41 5.44 9.06 -74.06 -0.67 4.77 16 41 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.11 4.41 7.97 -2.91 -0.02 4.39 16 Total: -1.00 -61.25 358.59 0.47 -60.79 By element: Atomic # 1 Polarization: 48.38 SS G_CDS: -1.07 Total: 47.31 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 5.11 Total: -36.25 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.38 Total: -100.71 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.26 Total: -13.28 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.06 Total: 42.14 kcal Total: -61.25 0.47 -60.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167983550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.768 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds