Wall clock time and date at job start Tue Mar 31 2020 14:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.43199 * 119.99959 * 294.12034 * 3 2 1 5 5 N 3.51036 * 140.68877 * 294.12130 * 2 1 3 6 6 C 1.41173 * 119.99999 * 114.12695 * 3 2 1 7 7 C 1.39025 * 119.99917 * 5.38459 * 6 3 2 8 8 H 1.07998 * 120.00341 * 24.39058 * 7 6 3 9 9 C 1.40821 * 119.99897 * 204.39840 * 7 6 3 10 10 N 1.30350 * 120.00195 * 7.80041 * 9 7 6 11 11 Si 1.86795 * 120.00239 * 187.80683 * 9 7 6 12 12 H 1.48502 * 109.47228 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47582 * 119.99698 * 11 9 7 14 14 H 1.48500 * 109.47173 * 239.99843 * 11 9 7 15 15 N 1.38245 * 120.00100 * 185.39021 * 6 3 2 16 16 C 1.39957 * 119.99793 * 242.11566 * 15 6 3 17 17 C 1.38767 * 120.09499 * 2.94200 * 16 15 6 18 18 C 1.38196 * 119.97882 * 180.27889 * 17 16 15 19 19 C 1.38276 * 120.16739 * 359.74430 * 18 17 16 20 20 C 1.38266 * 120.18601 * 359.97438 * 19 18 17 21 21 C 1.38526 * 120.01822 * 0.02562 * 20 19 18 22 22 O 1.35986 * 120.08073 * 179.97438 * 21 20 19 23 23 C 1.42903 * 117.00229 * 5.32798 * 22 21 20 24 24 C 1.54890 * 110.75598 * 157.20306 * 23 22 21 25 25 C 1.54266 * 104.31319 * 156.32516 * 24 23 22 26 26 C 1.53876 * 106.59782 * 336.32518 * 25 24 23 27 27 C 1.54265 * 106.59808 * 359.97438 * 26 25 24 28 28 H 0.96995 * 120.00120 * 184.99883 * 10 9 7 29 29 H 0.97002 * 120.00049 * 62.11216 * 15 6 3 30 30 H 1.08000 * 120.00933 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.91414 * 179.77019 * 18 17 16 32 32 H 1.07998 * 119.90888 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.98955 * 180.02562 * 20 19 18 34 34 H 1.09001 * 110.81185 * 33.86789 * 23 22 21 35 35 H 1.08997 * 110.48640 * 37.57602 * 24 23 22 36 36 H 1.09004 * 110.48235 * 275.07142 * 24 23 22 37 37 H 1.09001 * 110.02863 * 95.60510 * 25 24 23 38 38 H 1.08998 * 110.03245 * 217.03771 * 25 24 23 39 39 H 1.08994 * 110.03235 * 119.28623 * 26 25 24 40 40 H 1.08998 * 110.02648 * 240.66722 * 26 25 24 41 41 H 1.09004 * 110.48687 * 142.28810 * 27 26 25 42 42 H 1.08990 * 110.49132 * 264.80269 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2842 -0.5058 1.1319 5 7 3.8519 -0.9089 2.0297 6 6 3.2736 0.5007 -1.1158 7 6 2.5828 1.0946 -2.1660 8 1 1.6097 1.5304 -1.9943 9 6 3.1519 1.1276 -3.4537 10 7 4.2519 0.4720 -3.6972 11 14 2.3305 2.1110 -4.8129 12 1 1.1037 2.7588 -4.2831 13 1 3.2672 3.1525 -5.3059 14 1 1.9671 1.2032 -5.9305 15 7 4.6515 0.3998 -1.1642 16 6 5.4367 1.5574 -1.2127 17 6 4.8376 2.8075 -1.1507 18 6 5.6147 3.9490 -1.2046 19 6 6.9895 3.8492 -1.3149 20 6 7.5940 2.6070 -1.3713 21 6 6.8225 1.4577 -1.3179 22 8 7.4157 0.2354 -1.3739 23 6 8.8444 0.2067 -1.3694 24 6 9.3644 -1.1645 -0.8708 25 6 10.7796 -1.2781 -1.4743 26 6 10.8049 -0.3625 -2.7108 27 6 9.4041 0.2749 -2.8160 28 1 4.6831 0.5526 -4.5622 29 1 5.0742 -0.4733 -1.1645 30 1 3.7641 2.8884 -1.0645 31 1 5.1471 4.9215 -1.1600 32 1 7.5928 4.7440 -1.3563 33 1 8.6680 2.5327 -1.4571 34 1 9.2461 1.0167 -0.7606 35 1 8.7277 -1.9699 -1.2370 36 1 9.4114 -1.1817 0.2180 37 1 11.5224 -0.9464 -0.7488 38 1 10.9785 -2.3086 -1.7685 39 1 11.5601 0.4133 -2.5855 40 1 11.0169 -0.9487 -3.6049 41 1 9.4801 1.3109 -3.1463 42 1 8.7750 -0.2968 -3.4981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:01 Heat of formation + Delta-G solvation = 35.648390 kcal Electronic energy + Delta-G solvation = -26843.071469 eV Core-core repulsion = 23173.698625 eV Total energy + Delta-G solvation = -3669.372844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.03421 -38.37993 -36.88053 -35.82410 -35.12086 -34.65878 -33.45614 -30.94814 -29.66330 -28.74318 -28.27223 -27.28582 -27.06487 -22.83770 -21.87697 -21.07582 -20.38979 -20.11649 -18.80188 -18.00371 -17.18474 -16.71523 -16.11701 -15.75972 -15.48941 -15.11463 -14.52308 -14.13841 -13.97287 -13.72690 -13.43446 -13.24197 -12.72879 -12.60481 -12.51172 -12.29211 -12.24598 -11.96650 -11.74601 -11.60444 -11.55079 -11.45343 -11.36145 -11.24744 -11.16621 -10.98639 -10.90193 -10.76435 -10.61872 -10.54758 -10.32294 -10.29457 -9.99968 -9.71610 -8.14637 -7.93206 -7.55189 -6.37785 -5.39449 1.92608 2.03205 2.39441 2.75346 2.83010 2.90705 3.45173 3.53793 3.90852 4.07731 4.11516 4.29809 4.42360 4.49523 4.54405 4.57590 4.79592 5.11751 5.21649 5.28231 5.36839 5.40928 5.45999 5.51862 5.53423 5.60866 5.73017 5.78008 5.78058 5.91425 5.99420 6.13603 6.17919 6.20956 6.22020 6.29493 6.37857 6.48801 6.75574 6.86514 7.11180 7.17060 7.29831 7.41923 7.74791 7.83680 7.96333 8.49198 8.67730 9.03134 9.17846 9.30551 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004831 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.314583 B = 5794.933833 C = 6778.463401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C 0.326 3.674 3 C -0.310 4.310 4 C 0.311 3.689 5 N -0.534 5.534 6 C 0.389 3.611 7 C -0.386 4.386 8 H 0.108 0.892 9 C 0.075 3.925 10 N -0.712 5.712 11 Si 0.918 3.082 12 H -0.248 1.248 13 H -0.261 1.261 14 H -0.265 1.265 15 N -0.657 5.657 16 C 0.236 3.764 17 C -0.158 4.158 18 C -0.112 4.112 19 C -0.158 4.158 20 C -0.172 4.172 21 C 0.056 3.944 22 O -0.303 6.303 23 C 0.084 3.916 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.145 4.145 28 H 0.299 0.701 29 H 0.406 0.594 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.173 4.152 -6.183 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.217 5.217 2 C 0.018 3.982 3 C -0.328 4.328 4 C 0.004 3.996 5 N -0.216 5.216 6 C 0.284 3.716 7 C -0.414 4.414 8 H 0.126 0.874 9 C -0.157 4.157 10 N -0.331 5.331 11 Si 0.739 3.261 12 H -0.171 1.171 13 H -0.186 1.186 14 H -0.189 1.189 15 N -0.278 5.278 16 C 0.132 3.868 17 C -0.180 4.180 18 C -0.131 4.131 19 C -0.178 4.178 20 C -0.191 4.191 21 C 0.008 3.992 22 O -0.217 6.217 23 C 0.027 3.973 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.183 4.183 28 H 0.111 0.889 29 H 0.243 0.757 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.243 3.208 -4.983 14.509 hybrid contribution 0.450 0.369 -1.183 1.318 sum 13.694 3.577 -6.166 15.438 Atomic orbital electron populations 1.81045 1.12263 1.17835 1.10560 1.24719 0.91348 0.90533 0.91599 1.13121 0.83009 1.39712 0.96970 1.25197 0.92347 0.90543 0.91527 1.81055 1.09827 1.18220 1.12534 1.16740 0.80812 0.85815 0.88230 1.20309 1.03424 1.26484 0.91169 0.87385 1.26397 0.94610 0.93774 1.00879 1.69504 1.13005 1.25282 1.25268 0.86007 0.80961 0.79899 0.79191 1.17116 1.18584 1.18945 1.41374 1.03201 1.05974 1.77245 1.16953 0.86356 0.87542 0.95945 1.20818 1.00993 0.89927 1.06307 1.20739 0.93438 0.97672 1.01266 1.20505 0.94712 0.96077 1.06554 1.20826 0.98778 0.92184 1.07331 1.18343 0.90621 0.84354 1.05907 1.86047 1.19960 1.26402 1.89282 1.23350 0.79447 0.98373 0.96130 1.22372 0.95944 0.96693 1.00720 1.22062 0.96492 1.00132 0.97215 1.22040 0.96888 0.98792 0.98285 1.22921 0.96382 1.01433 0.97589 0.88861 0.75651 0.84301 0.86775 0.87260 0.86476 0.90633 0.90207 0.91001 0.91693 0.91384 0.91842 0.91602 0.91389 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.84 18.54 41.83 0.78 -12.06 16 2 C 0.33 7.55 14.01 -22.47 -0.31 7.23 16 3 C -0.31 -6.89 5.88 -104.93 -0.62 -7.51 16 4 C 0.31 7.22 14.82 -22.47 -0.33 6.89 16 5 N -0.53 -12.89 18.54 41.84 0.78 -12.12 16 6 C 0.39 8.16 4.94 -83.57 -0.41 7.75 16 7 C -0.39 -7.88 6.65 -38.31 -0.25 -8.13 16 8 H 0.11 2.23 7.21 -52.49 -0.38 1.85 16 9 C 0.07 1.43 5.00 -17.20 -0.09 1.34 16 10 N -0.71 -13.81 11.32 55.59 0.63 -13.18 16 11 Si 0.92 14.99 29.58 -169.99 -5.03 9.96 16 12 H -0.25 -4.13 7.11 56.52 0.40 -3.73 16 13 H -0.26 -4.22 7.11 56.52 0.40 -3.82 16 14 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 15 N -0.66 -13.16 3.22 -8.07 -0.03 -13.19 16 16 C 0.24 4.49 5.58 -83.54 -0.47 4.02 16 17 C -0.16 -2.87 8.74 -39.40 -0.34 -3.22 16 18 C -0.11 -1.77 10.04 -39.58 -0.40 -2.17 16 19 C -0.16 -2.35 10.04 -39.56 -0.40 -2.75 16 20 C -0.17 -2.65 8.89 -39.47 -0.35 -3.00 16 21 C 0.06 0.97 6.69 -39.07 -0.26 0.71 16 22 O -0.30 -5.07 9.18 -19.70 -0.18 -5.25 16 23 C 0.08 1.09 2.69 -24.54 -0.07 1.02 16 24 C -0.12 -1.37 6.54 -25.07 -0.16 -1.54 16 25 C -0.12 -1.09 6.80 -25.61 -0.17 -1.27 16 26 C -0.12 -1.11 6.80 -25.61 -0.17 -1.28 16 27 C -0.15 -1.66 6.38 -24.87 -0.16 -1.82 16 28 H 0.30 5.34 8.29 -40.82 -0.34 5.01 16 29 H 0.41 8.33 8.19 -40.82 -0.33 7.99 16 30 H 0.14 2.59 6.09 -52.49 -0.32 2.27 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.54 5.53 -52.49 -0.29 1.25 16 34 H 0.08 0.94 6.32 -51.93 -0.33 0.61 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -24.71 364.59 -7.52 -32.23 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.99 Total: 11.83 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.97 Total: -3.71 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 2.15 Total: -50.55 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 14.99 SS G_CDS: -5.03 Total: 9.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -24.71 -7.52 -32.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -24.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds