Wall clock time and date at job start Tue Mar 31 2020 13:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47104 * 270.00426 * 3 2 1 5 5 H 1.48498 * 109.46981 * 29.99736 * 3 2 1 6 6 H 1.48494 * 109.47318 * 150.00133 * 3 2 1 7 7 C 1.37876 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00614 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47754 * 180.02562 * 9 7 2 11 11 C 1.38384 * 119.84245 * 89.99888 * 10 9 7 12 12 C 1.37922 * 120.16063 * 180.02562 * 11 10 9 13 13 C 1.39701 * 119.83978 * 0.02562 * 12 11 10 14 14 N 1.36764 * 120.15754 * 179.97438 * 13 12 11 15 15 C 1.31120 * 120.00146 * 125.59565 * 14 13 12 16 16 N 1.37722 * 120.00082 * 353.98226 * 15 14 13 17 17 C 1.47829 * 120.00096 * 173.98408 * 15 14 13 18 18 C 1.39671 * 120.00219 * 179.97438 * 17 15 14 19 19 C 1.37706 * 119.99807 * 180.02562 * 18 17 15 20 20 C 1.39656 * 120.00265 * 0.02562 * 19 18 17 21 21 C 1.47866 * 119.99899 * 179.97438 * 20 19 18 22 22 N 1.34775 * 119.99903 * 180.02562 * 21 20 19 23 23 O 1.21556 * 119.99936 * 359.97438 * 21 20 19 24 24 C 1.39661 * 120.00023 * 0.26930 * 20 19 18 25 25 C 1.37705 * 120.00033 * 359.45305 * 24 20 19 26 26 C 1.39708 * 119.68902 * 0.24691 * 13 12 11 27 27 C 1.37933 * 119.83403 * 359.49885 * 26 13 12 28 28 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47191 * 60.00003 * 9 7 2 30 30 H 1.09003 * 109.47306 * 300.00140 * 9 7 2 31 31 H 1.08004 * 119.91509 * 0.02562 * 11 10 9 32 32 H 1.07999 * 120.08287 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99999 * 352.51048 * 16 15 14 34 34 H 0.97001 * 120.00295 * 172.51647 * 16 15 14 35 35 H 1.08002 * 119.99997 * 0.05686 * 18 17 15 36 36 H 1.08005 * 119.99798 * 179.97438 * 19 18 17 37 37 H 0.97000 * 119.99945 * 0.02562 * 22 21 20 38 38 H 0.97006 * 119.99893 * 179.72519 * 22 21 20 39 39 H 1.07994 * 119.99495 * 179.72497 * 24 20 19 40 40 H 1.07993 * 119.99731 * 180.25787 * 25 24 20 41 41 H 1.07995 * 120.08631 * 179.72268 * 26 13 12 42 42 H 1.07997 * 119.92171 * 180.22867 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 6 4.2429 -3.2644 -1.2002 12 6 4.7021 -4.5649 -1.2078 13 6 4.9356 -5.2266 0.0002 14 7 5.3905 -6.5164 0.0003 15 6 6.4793 -6.8275 0.6613 16 7 7.2329 -5.8376 1.2519 17 6 6.8981 -8.2409 0.7726 18 6 8.0582 -8.5723 1.4762 19 6 8.4485 -9.8888 1.5793 20 6 7.6846 -10.8927 0.9799 21 6 8.1040 -12.3063 1.0903 22 7 7.3671 -13.2750 0.5114 23 8 9.1140 -12.5946 1.7022 24 6 6.5279 -10.5607 0.2711 25 6 6.1344 -9.2448 0.1728 26 6 4.6967 -4.5667 1.2082 27 6 4.2424 -3.2643 1.2004 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8745 -0.6809 -0.8905 31 1 4.0615 -2.7516 -2.1333 32 1 4.8801 -5.0707 -2.1452 33 1 7.0215 -4.9049 1.0894 34 1 7.9752 -6.0729 1.8303 35 1 8.6489 -7.7960 1.9398 36 1 9.3458 -10.1451 2.1231 37 1 6.5618 -13.0447 0.0221 38 1 7.6445 -14.2020 0.5804 39 1 5.9397 -11.3366 -0.1961 40 1 5.2377 -8.9886 -0.3718 41 1 4.8707 -5.0737 2.1457 42 1 4.0608 -2.7516 2.1334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171256705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:50 Heat of formation + Delta-G solvation = 31.483176 kcal Electronic energy + Delta-G solvation = -24628.265699 eV Core-core repulsion = 20958.712239 eV Total energy + Delta-G solvation = -3669.553461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61850 -39.62104 -38.62288 -36.87795 -34.36293 -33.62138 -32.48570 -31.71847 -31.11655 -30.36539 -30.27785 -27.16807 -25.16174 -23.22696 -22.77597 -22.08964 -21.50813 -20.54449 -19.60128 -18.77756 -17.70972 -17.40731 -16.99388 -16.78311 -15.73235 -15.41448 -15.21611 -15.00169 -14.84457 -14.79308 -14.12839 -14.06780 -13.82219 -13.55705 -13.33353 -12.92377 -12.73818 -12.57783 -12.37321 -12.18245 -11.65853 -11.56204 -11.34026 -10.82679 -10.62257 -10.55571 -10.35902 -10.20935 -10.01921 -9.66356 -9.50108 -9.39508 -9.36742 -8.64562 -8.59999 -8.41753 -7.24892 -6.08617 -4.07837 0.03822 0.92740 1.59947 1.94118 2.25786 2.84284 2.99965 3.26655 3.34546 3.36704 3.40781 3.52236 4.07928 4.26254 4.35654 4.38532 4.39601 4.53994 4.80966 4.99794 5.18604 5.22515 5.25359 5.43042 5.48651 5.61347 5.79357 5.82063 5.84001 5.96851 6.08003 6.11140 6.24792 6.34649 6.42731 6.53406 6.81447 6.84098 6.92252 6.98245 6.99036 7.02580 7.37758 7.56782 7.58684 7.69510 7.75048 8.31863 8.48664 8.97258 9.51368 11.04345 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.039557 B = 0.001923 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.670321 B =14554.833325 C =14883.923283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.040 4.040 11 C -0.107 4.107 12 C -0.119 4.119 13 C 0.075 3.925 14 N -0.539 5.539 15 C 0.433 3.567 16 N -0.877 5.877 17 C -0.019 4.019 18 C -0.106 4.106 19 C -0.061 4.061 20 C -0.130 4.130 21 C 0.564 3.436 22 N -0.850 5.850 23 O -0.540 6.540 24 C -0.090 4.090 25 C -0.073 4.073 26 C -0.157 4.157 27 C -0.106 4.106 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.409 0.591 34 H 0.394 0.606 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.403 0.597 38 H 0.406 0.594 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.847 -22.363 1.376 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.022 4.022 10 C -0.041 4.041 11 C -0.125 4.125 12 C -0.139 4.139 13 C -0.024 4.024 14 N -0.263 5.263 15 C 0.161 3.839 16 N -0.429 5.429 17 C -0.022 4.022 18 C -0.126 4.126 19 C -0.080 4.080 20 C -0.134 4.134 21 C 0.350 3.650 22 N -0.414 5.414 23 O -0.418 6.418 24 C -0.109 4.109 25 C -0.093 4.093 26 C -0.178 4.178 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.242 0.758 34 H 0.223 0.777 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.232 0.768 38 H 0.237 0.763 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.129 0.871 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.636 -22.654 1.231 28.735 hybrid contribution 0.339 1.514 0.329 1.586 sum 17.974 -21.139 1.560 27.792 Atomic orbital electron populations 1.69899 1.06254 1.26956 1.50660 1.25009 0.94749 0.99018 0.94537 0.86797 0.80354 0.83680 0.78618 1.20174 1.21254 1.18984 1.20943 0.88275 0.94668 1.51208 0.90825 1.18802 0.97453 0.88700 0.97261 1.20323 0.93501 0.98131 0.92097 1.20977 0.99078 0.94181 0.98311 1.20945 1.02158 0.94487 0.96274 1.18360 1.02351 0.88361 0.93362 1.69217 1.12728 1.18083 1.26242 1.20617 0.87450 0.87950 0.87923 1.43435 1.36355 1.08773 1.54321 1.18545 0.95180 0.89947 0.98519 1.21169 0.95844 0.96642 0.98970 1.21126 0.99024 0.91206 0.96675 1.20011 0.97614 0.93180 1.02582 1.18307 0.82854 0.85754 0.78079 1.43769 1.29813 1.10290 1.57561 1.90828 1.25370 1.83678 1.41922 1.21276 0.95220 0.96852 0.97525 1.21339 0.99753 0.90973 0.97186 1.21443 1.04683 0.95311 0.96384 1.20922 0.99195 0.94085 0.98248 0.92602 0.95500 0.95896 0.86074 0.86626 0.75847 0.77736 0.84939 0.84102 0.76760 0.76323 0.85022 0.83221 0.87115 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.51 -14.57 9.65 -34.44 -0.33 -14.90 16 8 H 0.07 2.31 7.98 -52.48 -0.42 1.89 16 9 C 0.01 0.35 4.16 -29.04 -0.12 0.23 16 10 C -0.04 -0.83 5.08 -104.52 -0.53 -1.36 16 11 C -0.11 -2.04 9.68 -39.64 -0.38 -2.42 16 12 C -0.12 -2.05 10.00 -39.15 -0.39 -2.44 16 13 C 0.08 1.25 5.30 -84.57 -0.45 0.80 16 14 N -0.54 -7.82 9.53 -8.52 -0.08 -7.90 16 15 C 0.43 4.89 7.49 -153.75 -1.15 3.74 16 16 N -0.88 -8.01 8.30 32.55 0.27 -7.74 16 17 C -0.02 -0.18 5.88 -104.91 -0.62 -0.79 16 18 C -0.11 -0.77 9.53 -39.24 -0.37 -1.14 16 19 C -0.06 -0.47 9.58 -39.25 -0.38 -0.85 16 20 C -0.13 -0.99 5.88 -104.90 -0.62 -1.61 16 21 C 0.56 4.65 8.05 -12.32 -0.10 4.55 16 22 N -0.85 -3.59 8.82 30.53 0.27 -3.32 16 23 O -0.54 -6.54 17.17 5.32 0.09 -6.45 16 24 C -0.09 -0.58 9.52 -39.25 -0.37 -0.95 16 25 C -0.07 -0.61 9.56 -39.24 -0.38 -0.99 16 26 C -0.16 -2.60 7.92 -39.14 -0.31 -2.91 16 27 C -0.11 -1.98 9.68 -39.64 -0.38 -2.37 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.63 7.14 -51.92 -0.37 0.26 16 30 H 0.02 0.53 7.51 -51.93 -0.39 0.14 16 31 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.41 4.27 6.55 -40.82 -0.27 4.00 16 34 H 0.39 2.35 6.95 -40.82 -0.28 2.06 16 35 H 0.13 0.63 6.42 -52.49 -0.34 0.29 16 36 H 0.14 1.02 7.64 -52.48 -0.40 0.62 16 37 H 0.40 0.64 6.85 -40.82 -0.28 0.37 16 38 H 0.41 1.24 8.93 -40.82 -0.36 0.88 16 39 H 0.13 0.41 6.39 -52.49 -0.34 0.08 16 40 H 0.15 1.34 7.54 -52.49 -0.40 0.95 16 41 H 0.11 1.65 7.87 -52.49 -0.41 1.24 16 42 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -35.63 358.67 -9.61 -45.24 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.69 Total: 6.49 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -6.98 Total: -21.53 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 1.23 Total: -45.75 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.09 Total: -6.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.63 -9.61 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171256705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.722 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds