Wall clock time and date at job start Tue Mar 31 2020 13:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47104 * 270.00426 * 3 2 1 5 5 H 1.48498 * 109.46981 * 29.99736 * 3 2 1 6 6 H 1.48494 * 109.47318 * 150.00133 * 3 2 1 7 7 C 1.37876 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00614 * 179.97438 * 7 2 1 10 10 C 1.50693 * 109.47754 * 180.02562 * 9 7 2 11 11 C 1.38384 * 119.84245 * 89.99888 * 10 9 7 12 12 C 1.37922 * 120.16063 * 180.02562 * 11 10 9 13 13 C 1.39701 * 119.83978 * 0.02562 * 12 11 10 14 14 N 1.36764 * 120.15754 * 179.97438 * 13 12 11 15 15 C 1.31120 * 120.00146 * 125.59565 * 14 13 12 16 16 N 1.37722 * 120.00082 * 353.98226 * 15 14 13 17 17 C 1.47829 * 120.00096 * 173.98408 * 15 14 13 18 18 C 1.39671 * 120.00219 * 179.97438 * 17 15 14 19 19 C 1.37706 * 119.99807 * 180.02562 * 18 17 15 20 20 C 1.39656 * 120.00265 * 0.02562 * 19 18 17 21 21 C 1.47866 * 119.99899 * 179.97438 * 20 19 18 22 22 N 1.34775 * 119.99903 * 180.02562 * 21 20 19 23 23 O 1.21556 * 119.99936 * 359.97438 * 21 20 19 24 24 C 1.39661 * 120.00023 * 0.26930 * 20 19 18 25 25 C 1.37705 * 120.00033 * 359.45305 * 24 20 19 26 26 C 1.39708 * 119.68902 * 0.24691 * 13 12 11 27 27 C 1.37933 * 119.83403 * 359.49885 * 26 13 12 28 28 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47191 * 60.00003 * 9 7 2 30 30 H 1.09003 * 109.47306 * 300.00140 * 9 7 2 31 31 H 1.08004 * 119.91509 * 0.02562 * 11 10 9 32 32 H 1.07999 * 120.08287 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99999 * 352.51048 * 16 15 14 34 34 H 0.97001 * 120.00295 * 172.51647 * 16 15 14 35 35 H 1.08002 * 119.99997 * 0.05686 * 18 17 15 36 36 H 1.08005 * 119.99798 * 179.97438 * 19 18 17 37 37 H 0.97000 * 119.99945 * 0.02562 * 22 21 20 38 38 H 0.97006 * 119.99893 * 179.72519 * 22 21 20 39 39 H 1.07994 * 119.99495 * 179.72497 * 24 20 19 40 40 H 1.07993 * 119.99731 * 180.25787 * 25 24 20 41 41 H 1.07995 * 120.08631 * 179.72268 * 26 13 12 42 42 H 1.07997 * 119.92171 * 180.22867 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 6 4.2429 -3.2644 -1.2002 12 6 4.7021 -4.5649 -1.2078 13 6 4.9356 -5.2266 0.0002 14 7 5.3905 -6.5164 0.0003 15 6 6.4793 -6.8275 0.6613 16 7 7.2329 -5.8376 1.2519 17 6 6.8981 -8.2409 0.7726 18 6 8.0582 -8.5723 1.4762 19 6 8.4485 -9.8888 1.5793 20 6 7.6846 -10.8927 0.9799 21 6 8.1040 -12.3063 1.0903 22 7 7.3671 -13.2750 0.5114 23 8 9.1140 -12.5946 1.7022 24 6 6.5279 -10.5607 0.2711 25 6 6.1344 -9.2448 0.1728 26 6 4.6967 -4.5667 1.2082 27 6 4.2424 -3.2643 1.2004 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6797 0.8895 30 1 3.8745 -0.6809 -0.8905 31 1 4.0615 -2.7516 -2.1333 32 1 4.8801 -5.0707 -2.1452 33 1 7.0215 -4.9049 1.0894 34 1 7.9752 -6.0729 1.8303 35 1 8.6489 -7.7960 1.9398 36 1 9.3458 -10.1451 2.1231 37 1 6.5618 -13.0447 0.0221 38 1 7.6445 -14.2020 0.5804 39 1 5.9397 -11.3366 -0.1961 40 1 5.2377 -8.9886 -0.3718 41 1 4.8707 -5.0737 2.1457 42 1 4.0608 -2.7516 2.1334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171256705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:49 Heat of formation + Delta-G solvation = 6.612857 kcal Electronic energy + Delta-G solvation = -24629.344157 eV Core-core repulsion = 20958.712239 eV Total energy + Delta-G solvation = -3670.631919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29886 -40.68553 -39.50890 -37.91853 -35.38658 -34.88107 -33.96536 -32.56597 -31.89959 -31.68343 -31.58823 -28.66247 -26.13858 -24.55741 -23.54250 -23.46340 -22.56715 -21.61027 -20.62842 -19.35551 -18.96602 -18.51500 -18.28734 -17.66454 -16.82660 -16.37150 -16.25523 -16.00201 -15.85849 -15.84325 -15.44225 -14.98949 -14.71146 -14.52547 -14.40676 -14.30136 -14.19079 -14.04097 -13.55208 -13.37911 -13.03628 -12.83415 -12.45952 -12.30776 -12.09110 -11.89039 -11.78183 -11.53121 -11.24698 -11.05523 -10.78840 -10.73592 -10.08692 -10.04268 -9.81646 -9.69498 -8.53589 -8.29321 -6.34892 -0.65353 0.35794 0.40745 0.55116 1.36658 1.38224 1.38829 1.50525 2.03905 2.35504 2.50447 2.56749 2.85756 3.01086 3.04526 3.21954 3.79101 3.81748 3.95772 4.05991 4.13404 4.26239 4.30110 4.32724 4.44075 4.64216 4.64690 4.70918 4.98117 5.03057 5.04049 5.11908 5.20896 5.25044 5.32938 5.39185 5.55693 5.56212 5.60910 5.72859 5.87026 5.90478 6.00870 6.14384 6.28785 6.39215 6.71432 6.73592 7.25993 7.28318 7.30291 8.87122 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.039557 B = 0.001923 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.670321 B =14554.833325 C =14883.923283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.024 0.976 9 C 0.023 3.977 10 C -0.080 4.080 11 C -0.112 4.112 12 C -0.130 4.130 13 C 0.098 3.902 14 N -0.580 5.580 15 C 0.455 3.545 16 N -0.864 5.864 17 C -0.041 4.041 18 C -0.093 4.093 19 C -0.071 4.071 20 C -0.132 4.132 21 C 0.561 3.439 22 N -0.829 5.829 23 O -0.586 6.586 24 C -0.079 4.079 25 C -0.079 4.079 26 C -0.157 4.157 27 C -0.109 4.109 28 H 0.267 0.733 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.406 0.594 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.417 0.583 38 H 0.414 0.586 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.246 -23.589 1.666 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.042 0.958 9 C -0.014 4.014 10 C -0.081 4.081 11 C -0.130 4.130 12 C -0.150 4.150 13 C -0.003 4.003 14 N -0.306 5.306 15 C 0.183 3.817 16 N -0.415 5.415 17 C -0.044 4.044 18 C -0.113 4.113 19 C -0.090 4.090 20 C -0.136 4.136 21 C 0.347 3.653 22 N -0.393 5.393 23 O -0.467 6.467 24 C -0.097 4.097 25 C -0.099 4.099 26 C -0.178 4.178 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.238 0.762 34 H 0.244 0.756 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.250 0.750 38 H 0.246 0.754 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.147 0.853 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.064 -23.927 1.525 31.264 hybrid contribution -0.337 1.541 0.261 1.599 sum 19.727 -22.386 1.787 29.891 Atomic orbital electron populations 1.70068 1.08377 1.28256 1.52353 1.26032 0.95650 1.03526 0.93982 0.85606 0.79513 0.77882 0.79351 1.19016 1.20878 1.16709 1.21191 0.91029 0.92857 1.50754 0.95787 1.18627 0.94056 0.91197 0.97539 1.20163 0.96938 0.97342 0.93653 1.21020 0.99203 0.95059 0.97745 1.21100 1.02534 0.93849 0.97510 1.18524 1.00161 0.88760 0.92813 1.69146 1.15244 1.16308 1.29875 1.20926 0.86344 0.89103 0.85327 1.43465 1.36260 1.08261 1.53483 1.18593 0.96530 0.88838 1.00441 1.21333 0.95014 0.97112 0.97863 1.21273 0.99314 0.91488 0.96908 1.20147 0.97908 0.93046 1.02463 1.18443 0.82550 0.86445 0.77856 1.43635 1.29524 1.10142 1.56033 1.90812 1.27411 1.84277 1.44194 1.21512 0.94744 0.96887 0.96596 1.21409 0.99561 0.91726 0.97165 1.21545 1.04387 0.94468 0.97386 1.20981 0.99161 0.95077 0.97562 0.92389 0.94959 0.95227 0.86190 0.85262 0.76235 0.75645 0.82531 0.83895 0.74992 0.75390 0.81708 0.83899 0.85316 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 2 C 0.00 0.29 5.47 84.66 0.46 0.75 16 3 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.52 -30.71 9.65 25.60 0.25 -30.46 16 8 H 0.02 1.60 7.98 -2.91 -0.02 1.57 16 9 C 0.02 1.10 4.16 29.10 0.12 1.22 16 10 C -0.08 -3.41 5.08 -19.80 -0.10 -3.51 16 11 C -0.11 -4.33 9.68 22.23 0.22 -4.12 16 12 C -0.13 -4.45 10.00 22.55 0.23 -4.22 16 13 C 0.10 3.15 5.30 39.08 0.21 3.35 16 14 N -0.58 -15.95 9.53 -180.85 -1.72 -17.67 16 15 C 0.45 9.26 7.49 136.20 1.02 10.28 16 16 N -0.86 -13.47 8.30 -50.93 -0.42 -13.89 16 17 C -0.04 -0.66 5.88 -20.05 -0.12 -0.78 16 18 C -0.09 -1.09 9.53 22.49 0.21 -0.87 16 19 C -0.07 -0.93 9.58 22.49 0.22 -0.72 16 20 C -0.13 -1.70 5.88 -20.04 -0.12 -1.82 16 21 C 0.56 8.15 8.05 86.79 0.70 8.85 16 22 N -0.83 -4.80 8.82 -175.58 -1.55 -6.35 16 23 O -0.59 -13.59 17.17 -3.89 -0.07 -13.66 16 24 C -0.08 -0.78 9.52 22.49 0.21 -0.57 16 25 C -0.08 -1.15 9.56 22.49 0.22 -0.94 16 26 C -0.16 -5.06 7.92 22.55 0.18 -4.88 16 27 C -0.11 -4.11 9.68 22.23 0.22 -3.90 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.03 1.49 7.14 -2.38 -0.02 1.47 16 30 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 31 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 33 H 0.41 7.53 6.55 -92.71 -0.61 6.93 16 34 H 0.41 3.54 6.95 -92.71 -0.64 2.89 16 35 H 0.16 0.94 6.42 -2.91 -0.02 0.92 16 36 H 0.14 1.84 7.64 -2.91 -0.02 1.82 16 37 H 0.42 -0.09 6.85 -92.71 -0.63 -0.72 16 38 H 0.41 1.54 8.93 -92.70 -0.83 0.71 16 39 H 0.17 0.40 6.39 -2.91 -0.02 0.38 16 40 H 0.14 2.33 7.54 -2.91 -0.02 2.31 16 41 H 0.13 3.61 7.87 -2.91 -0.02 3.59 16 42 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -80.72 358.67 0.88 -79.84 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -1.65 Total: 18.12 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 4.11 Total: -32.32 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.40 Total: -97.91 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.07 Total: -13.66 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -80.72 0.88 -79.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171256705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.452 kcal (2) G-P(sol) polarization free energy of solvation -80.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds