Wall clock time and date at job start Tue Mar 31 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35982 * 120.03314 * 2 1 4 4 C 1.40519 * 120.06717 * 180.26098 * 3 2 1 5 5 N 1.35754 * 119.92916 * 179.76110 * 4 3 2 6 6 C 1.31614 * 119.99791 * 122.72163 * 5 4 3 7 7 N 1.37477 * 120.00357 * 354.15819 * 6 5 4 8 8 C 1.47657 * 119.99925 * 174.15813 * 6 5 4 9 9 C 1.39782 * 120.01476 * 180.02562 * 8 6 5 10 10 C 1.37664 * 119.98886 * 180.27798 * 9 8 6 11 11 C 1.39690 * 120.00996 * 359.48940 * 10 9 8 12 12 C 1.47858 * 119.98755 * 180.23454 * 11 10 9 13 13 N 1.34782 * 119.99937 * 0.27400 * 12 11 10 14 14 O 1.21544 * 120.00175 * 180.27421 * 12 11 10 15 15 C 1.39684 * 120.02374 * 0.50810 * 11 10 9 16 16 C 1.37670 * 120.01121 * 359.74839 * 15 11 10 17 17 C 1.40553 * 120.13918 * 359.48243 * 4 3 2 18 18 C 1.35952 * 120.06946 * 0.23238 * 17 4 3 19 19 C 1.41090 * 120.03603 * 179.72309 * 2 1 3 20 20 C 1.40736 * 120.07252 * 0.02562 * 19 2 1 21 21 H 1.08004 * 119.99497 * 332.26350 * 20 19 2 22 22 C 1.39988 * 120.00721 * 152.26011 * 20 19 2 23 23 N 1.30831 * 119.99466 * 347.97377 * 22 20 19 24 24 Si 1.86792 * 120.00428 * 167.97030 * 22 20 19 25 25 H 1.48503 * 109.47220 * 94.96858 * 24 22 20 26 26 H 1.48498 * 109.47511 * 214.97468 * 24 22 20 27 27 H 1.48505 * 109.46982 * 334.97418 * 24 22 20 28 28 H 1.08994 * 109.46616 * 270.27828 * 1 2 3 29 29 H 1.08996 * 109.46966 * 30.28116 * 1 2 3 30 30 H 1.08999 * 109.47067 * 150.28133 * 1 2 3 31 31 H 1.07995 * 119.97079 * 359.97438 * 3 2 1 32 32 H 0.96998 * 119.99557 * 351.83566 * 7 6 5 33 33 H 0.97002 * 119.99624 * 171.83710 * 7 6 5 34 34 H 1.08004 * 120.00041 * 359.97438 * 9 8 6 35 35 H 1.08000 * 119.99239 * 179.72330 * 10 9 8 36 36 H 0.97006 * 119.99761 * 0.02562 * 13 12 11 37 37 H 0.97000 * 119.99719 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.99690 * 179.72299 * 15 11 10 39 39 H 1.07993 * 120.00656 * 179.97438 * 16 15 11 40 40 H 1.07997 * 119.96520 * 180.25988 * 17 4 3 41 41 H 1.08002 * 120.03282 * 180.02562 * 18 17 4 42 42 H 0.96999 * 119.99764 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1877 1.1772 0.0000 4 6 3.5928 1.1781 -0.0055 5 7 4.2694 2.3550 -0.0104 6 6 5.1353 2.6202 0.9446 7 7 5.2677 1.7618 2.0103 8 6 5.9646 3.8397 0.8715 9 6 6.8847 4.1214 1.8854 10 6 7.6536 5.2614 1.8196 11 6 7.5219 6.1312 0.7345 12 6 8.3516 7.3529 0.6617 13 7 9.2387 7.6243 1.6395 14 8 8.2337 8.1124 -0.2799 15 6 6.6026 5.8502 -0.2790 16 6 5.8295 4.7131 -0.2115 17 6 4.2993 -0.0370 -0.0001 18 6 3.6246 -1.2172 0.0057 19 6 2.2133 -1.2214 0.0059 20 6 1.5119 -2.4415 0.0113 21 1 0.5249 -2.4951 0.4465 22 6 2.0934 -3.5858 -0.5475 23 7 3.1736 -3.4802 -1.2781 24 14 1.3274 -5.2632 -0.2499 25 1 0.4241 -5.6023 -1.3789 26 1 2.3991 -6.2861 -0.1490 27 1 0.5496 -5.2348 1.0149 28 1 -0.3632 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6477 2.1125 -0.0004 32 1 4.6450 1.0264 2.1209 33 1 5.9839 1.8917 2.6515 34 1 6.9889 3.4472 2.7227 35 1 8.3613 5.4814 2.6051 36 1 9.3331 7.0179 2.3907 37 1 9.7828 8.4259 1.5919 38 1 6.4980 6.5253 -1.1155 39 1 5.1185 4.4961 -0.9949 40 1 5.3793 -0.0330 -0.0002 41 1 4.1680 -2.1505 0.0103 42 1 3.5763 -4.2730 -1.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171257277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:19 Heat of formation + Delta-G solvation = 23.457225 kcal Electronic energy + Delta-G solvation = -25169.150674 eV Core-core repulsion = 21499.249182 eV Total energy + Delta-G solvation = -3669.901492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.29162 -38.97405 -38.07590 -36.35701 -34.14082 -33.72637 -32.28753 -31.33771 -30.77918 -30.64596 -28.72107 -26.27182 -25.41811 -23.97489 -22.62528 -21.72032 -20.68802 -20.21440 -18.93408 -18.46076 -17.32817 -17.16738 -16.91409 -16.16335 -15.43339 -15.24256 -14.98101 -14.94522 -14.40105 -14.12193 -13.99174 -13.67601 -13.40982 -13.11222 -12.77514 -12.65198 -12.12206 -11.91125 -11.86844 -11.79482 -11.37413 -11.18545 -11.18290 -11.06618 -10.92479 -10.52219 -10.31839 -10.02943 -9.94727 -9.52515 -9.48091 -9.15926 -8.99849 -8.89775 -7.91308 -7.47932 -6.87281 -6.71852 -4.33641 0.42745 1.24440 2.24708 2.68292 2.99579 3.00655 3.01805 3.06248 3.21422 3.40313 3.85343 3.94149 4.03246 4.49696 4.53318 4.58537 4.75291 4.90794 5.21482 5.35184 5.53184 5.59555 5.78510 5.95966 6.10895 6.19623 6.23825 6.33762 6.39999 6.44456 6.49751 6.63276 6.69060 6.70993 6.96066 7.00449 7.01290 7.09475 7.32437 7.48980 7.61371 7.74480 7.94186 7.96121 8.00341 8.16874 8.23296 8.52596 8.80042 8.82959 9.19602 10.10268 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.002239 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.919387 B =12500.969975 C =12845.543402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.190 4.190 3 C -0.074 4.074 4 C -0.041 4.041 5 N -0.505 5.505 6 C 0.382 3.618 7 N -0.880 5.880 8 C 0.002 3.998 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.144 4.144 12 C 0.565 3.435 13 N -0.853 5.853 14 O -0.541 6.541 15 C -0.060 4.060 16 C -0.082 4.082 17 C -0.122 4.122 18 C -0.151 4.151 19 C 0.110 3.890 20 C -0.448 4.448 21 H 0.081 0.919 22 C 0.071 3.929 23 N -0.791 5.791 24 Si 0.910 3.090 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.260 1.260 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.408 0.592 33 H 0.384 0.616 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.404 0.596 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.851 11.870 9.131 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.192 4.192 3 C -0.094 4.094 4 C -0.142 4.142 5 N -0.227 5.227 6 C 0.111 3.889 7 N -0.433 5.433 8 C -0.001 4.001 9 C -0.137 4.137 10 C -0.107 4.107 11 C -0.148 4.148 12 C 0.352 3.648 13 N -0.417 5.417 14 O -0.419 6.419 15 C -0.079 4.079 16 C -0.102 4.102 17 C -0.142 4.142 18 C -0.171 4.171 19 C 0.107 3.893 20 C -0.477 4.477 21 H 0.099 0.901 22 C -0.147 4.147 23 N -0.417 5.417 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.201 1.201 27 H -0.184 1.184 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.241 0.759 33 H 0.211 0.789 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.382 12.470 7.446 17.291 hybrid contribution 0.343 -1.732 1.260 2.169 sum 9.725 10.738 8.707 16.902 Atomic orbital electron populations 1.20408 0.93398 1.00713 0.99638 1.19401 0.94483 0.92933 1.12340 1.20104 0.91815 0.96176 1.01323 1.17893 0.92312 0.87789 1.16246 1.69152 1.11484 1.21324 1.20771 1.20664 0.94534 0.88387 0.85353 1.43136 1.36630 1.35093 1.28484 1.18658 0.94231 0.92440 0.94762 1.21088 0.96324 0.97569 0.98739 1.21038 0.98818 0.93941 0.96855 1.19906 1.00745 0.96273 0.97863 1.18351 0.79372 0.85314 0.81788 1.43765 1.42701 1.29203 1.26060 1.90815 1.68081 1.49773 1.33222 1.21263 0.92823 0.96337 0.97478 1.21428 0.98476 0.92338 0.97944 1.20867 0.97024 0.92826 1.03522 1.20991 0.94522 0.96520 1.05063 1.17544 0.91761 0.91667 0.88330 1.19540 1.02653 0.92799 1.32755 0.90127 1.25985 0.94377 1.01386 0.92911 1.69813 1.17529 1.31682 1.22641 0.86264 0.79586 0.80765 0.79954 1.19491 1.20057 1.18409 0.94041 0.94258 0.91966 0.89107 0.75927 0.78870 0.85271 0.85582 0.76970 0.76561 0.84332 0.83333 0.89626 0.86228 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.39 36.01 0.34 -1.40 16 2 C -0.19 -4.52 5.90 -104.35 -0.62 -5.13 16 3 C -0.07 -1.71 9.56 -39.53 -0.38 -2.09 16 4 C -0.04 -0.93 5.23 -84.40 -0.44 -1.37 16 5 N -0.51 -10.18 9.49 -8.34 -0.08 -10.26 16 6 C 0.38 6.25 7.50 -153.65 -1.15 5.09 16 7 N -0.88 -12.46 8.36 32.55 0.27 -12.19 16 8 C 0.00 0.02 5.88 -104.90 -0.62 -0.59 16 9 C -0.12 -1.15 9.53 -39.21 -0.37 -1.53 16 10 C -0.09 -0.73 9.52 -39.25 -0.37 -1.11 16 11 C -0.14 -1.52 5.88 -104.88 -0.62 -2.14 16 12 C 0.57 6.00 8.04 -12.32 -0.10 5.91 16 13 N -0.85 -5.09 8.82 30.53 0.27 -4.82 16 14 O -0.54 -7.91 17.17 5.33 0.09 -7.82 16 15 C -0.06 -0.72 9.58 -39.25 -0.38 -1.10 16 16 C -0.08 -1.09 9.57 -39.21 -0.38 -1.47 16 17 C -0.12 -2.82 7.98 -39.53 -0.32 -3.13 16 18 C -0.15 -3.80 8.59 -39.31 -0.34 -4.14 16 19 C 0.11 2.82 5.56 -106.78 -0.59 2.22 16 20 C -0.45 -11.31 8.06 -37.98 -0.31 -11.62 16 21 H 0.08 1.95 6.91 -52.48 -0.36 1.58 16 22 C 0.07 1.73 5.23 -17.32 -0.09 1.64 16 23 N -0.79 -19.95 10.81 55.55 0.60 -19.35 16 24 Si 0.91 18.04 29.58 -169.99 -5.03 13.02 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.06 1.29 6.80 -51.93 -0.35 0.94 16 31 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.41 6.63 6.67 -40.82 -0.27 6.35 16 33 H 0.38 3.97 6.95 -40.82 -0.28 3.68 16 34 H 0.13 0.95 6.42 -52.48 -0.34 0.62 16 35 H 0.13 0.56 6.38 -52.49 -0.34 0.23 16 36 H 0.40 1.24 6.85 -40.82 -0.28 0.96 16 37 H 0.40 1.88 8.93 -40.82 -0.36 1.52 16 38 H 0.14 1.62 7.64 -52.49 -0.40 1.22 16 39 H 0.15 2.13 7.54 -52.49 -0.40 1.73 16 40 H 0.09 1.89 8.01 -52.49 -0.42 1.47 16 41 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 42 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -31.37 354.37 -9.78 -41.15 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -4.53 Total: 16.88 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -6.72 Total: -21.96 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 1.06 Total: -46.62 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.37 -9.78 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171257277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.611 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds