Wall clock time and date at job start Tue Mar 31 2020 14:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35982 * 120.03314 * 2 1 4 4 C 1.40519 * 120.06717 * 180.26098 * 3 2 1 5 5 N 1.35754 * 119.92916 * 179.76110 * 4 3 2 6 6 C 1.31614 * 119.99791 * 122.72163 * 5 4 3 7 7 N 1.37477 * 120.00357 * 354.15819 * 6 5 4 8 8 C 1.47657 * 119.99925 * 174.15813 * 6 5 4 9 9 C 1.39782 * 120.01476 * 180.02562 * 8 6 5 10 10 C 1.37664 * 119.98886 * 180.27798 * 9 8 6 11 11 C 1.39690 * 120.00996 * 359.48940 * 10 9 8 12 12 C 1.47858 * 119.98755 * 180.23454 * 11 10 9 13 13 N 1.34782 * 119.99937 * 0.27400 * 12 11 10 14 14 O 1.21544 * 120.00175 * 180.27421 * 12 11 10 15 15 C 1.39684 * 120.02374 * 0.50810 * 11 10 9 16 16 C 1.37670 * 120.01121 * 359.74839 * 15 11 10 17 17 C 1.40553 * 120.13918 * 359.48243 * 4 3 2 18 18 C 1.35952 * 120.06946 * 0.23238 * 17 4 3 19 19 C 1.41090 * 120.03603 * 179.72309 * 2 1 3 20 20 C 1.40736 * 120.07252 * 0.02562 * 19 2 1 21 21 H 1.08004 * 119.99497 * 332.26350 * 20 19 2 22 22 C 1.39988 * 120.00721 * 152.26011 * 20 19 2 23 23 N 1.30831 * 119.99466 * 347.97377 * 22 20 19 24 24 Si 1.86792 * 120.00428 * 167.97030 * 22 20 19 25 25 H 1.48503 * 109.47220 * 94.96858 * 24 22 20 26 26 H 1.48498 * 109.47511 * 214.97468 * 24 22 20 27 27 H 1.48505 * 109.46982 * 334.97418 * 24 22 20 28 28 H 1.08994 * 109.46616 * 270.27828 * 1 2 3 29 29 H 1.08996 * 109.46966 * 30.28116 * 1 2 3 30 30 H 1.08999 * 109.47067 * 150.28133 * 1 2 3 31 31 H 1.07995 * 119.97079 * 359.97438 * 3 2 1 32 32 H 0.96998 * 119.99557 * 351.83566 * 7 6 5 33 33 H 0.97002 * 119.99624 * 171.83710 * 7 6 5 34 34 H 1.08004 * 120.00041 * 359.97438 * 9 8 6 35 35 H 1.08000 * 119.99239 * 179.72330 * 10 9 8 36 36 H 0.97006 * 119.99761 * 0.02562 * 13 12 11 37 37 H 0.97000 * 119.99719 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.99690 * 179.72299 * 15 11 10 39 39 H 1.07993 * 120.00656 * 179.97438 * 16 15 11 40 40 H 1.07997 * 119.96520 * 180.25988 * 17 4 3 41 41 H 1.08002 * 120.03282 * 180.02562 * 18 17 4 42 42 H 0.96999 * 119.99764 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1877 1.1772 0.0000 4 6 3.5928 1.1781 -0.0055 5 7 4.2694 2.3550 -0.0104 6 6 5.1353 2.6202 0.9446 7 7 5.2677 1.7618 2.0103 8 6 5.9646 3.8397 0.8715 9 6 6.8847 4.1214 1.8854 10 6 7.6536 5.2614 1.8196 11 6 7.5219 6.1312 0.7345 12 6 8.3516 7.3529 0.6617 13 7 9.2387 7.6243 1.6395 14 8 8.2337 8.1124 -0.2799 15 6 6.6026 5.8502 -0.2790 16 6 5.8295 4.7131 -0.2115 17 6 4.2993 -0.0370 -0.0001 18 6 3.6246 -1.2172 0.0057 19 6 2.2133 -1.2214 0.0059 20 6 1.5119 -2.4415 0.0113 21 1 0.5249 -2.4951 0.4465 22 6 2.0934 -3.5858 -0.5475 23 7 3.1736 -3.4802 -1.2781 24 14 1.3274 -5.2632 -0.2499 25 1 0.4241 -5.6023 -1.3789 26 1 2.3991 -6.2861 -0.1490 27 1 0.5496 -5.2348 1.0149 28 1 -0.3632 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6477 2.1125 -0.0004 32 1 4.6450 1.0264 2.1209 33 1 5.9839 1.8917 2.6515 34 1 6.9889 3.4472 2.7227 35 1 8.3613 5.4814 2.6051 36 1 9.3331 7.0179 2.3907 37 1 9.7828 8.4259 1.5919 38 1 6.4980 6.5253 -1.1155 39 1 5.1185 4.4961 -0.9949 40 1 5.3793 -0.0330 -0.0002 41 1 4.1680 -2.1505 0.0103 42 1 3.5763 -4.2730 -1.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171257277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:18 Heat of formation + Delta-G solvation = 2.658660 kcal Electronic energy + Delta-G solvation = -25170.052568 eV Core-core repulsion = 21499.249182 eV Total energy + Delta-G solvation = -3670.803386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.20119 -40.34184 -39.36939 -37.77523 -35.46313 -34.87103 -33.81498 -32.68967 -31.97658 -31.75558 -30.37578 -27.97541 -26.78765 -25.37272 -23.57130 -23.04060 -22.21078 -21.51623 -20.27975 -19.30477 -19.10988 -18.19660 -17.99169 -17.45870 -17.14087 -16.21983 -15.95923 -15.85948 -15.78692 -15.68866 -15.33450 -14.65292 -14.46123 -14.41826 -14.29408 -14.25299 -13.67045 -13.56522 -13.19339 -13.15822 -13.00205 -12.81002 -12.71179 -12.46662 -12.12602 -12.09213 -11.65796 -11.30670 -11.23221 -11.21012 -10.71893 -10.59210 -10.02191 -9.98115 -9.41834 -9.30109 -8.63584 -8.42657 -6.18705 -0.55036 0.38777 0.77020 1.13748 1.37824 1.39764 1.52937 1.61934 2.16256 2.21843 2.51869 2.69810 2.85565 2.96373 3.50070 3.70201 3.78407 3.95076 4.02139 4.32465 4.37885 4.42314 4.47104 4.66206 4.70929 4.72547 4.95164 5.01534 5.04482 5.17646 5.20168 5.25020 5.31301 5.35980 5.47290 5.50726 5.75013 5.77706 5.88186 5.89588 6.12210 6.19295 6.22638 6.39358 6.43053 6.67662 6.95322 6.97104 7.08323 7.29614 7.67996 8.36641 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.002239 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.919387 B =12500.969975 C =12845.543402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.196 4.196 3 C -0.099 4.099 4 C -0.013 4.013 5 N -0.563 5.563 6 C 0.414 3.586 7 N -0.866 5.866 8 C -0.030 4.030 9 C -0.099 4.099 10 C -0.069 4.069 11 C -0.138 4.138 12 C 0.562 3.438 13 N -0.825 5.825 14 O -0.589 6.589 15 C -0.074 4.074 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.164 4.164 19 C 0.073 3.927 20 C -0.479 4.479 21 H 0.081 0.919 22 C 0.029 3.971 23 N -0.832 5.832 24 Si 0.982 3.018 25 H -0.266 1.266 26 H -0.269 1.269 27 H -0.256 1.256 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.401 0.599 33 H 0.406 0.594 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.419 0.581 37 H 0.414 0.586 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.819 13.249 11.947 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.198 4.198 3 C -0.119 4.119 4 C -0.114 4.114 5 N -0.288 5.288 6 C 0.142 3.858 7 N -0.418 5.418 8 C -0.032 4.032 9 C -0.119 4.119 10 C -0.088 4.088 11 C -0.142 4.142 12 C 0.349 3.651 13 N -0.390 5.390 14 O -0.470 6.470 15 C -0.093 4.093 16 C -0.109 4.109 17 C -0.152 4.152 18 C -0.185 4.185 19 C 0.071 3.929 20 C -0.509 4.509 21 H 0.099 0.901 22 C -0.184 4.184 23 N -0.459 5.459 24 Si 0.803 3.197 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.179 1.179 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.232 0.768 33 H 0.238 0.762 34 H 0.180 0.820 35 H 0.196 0.804 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.412 13.866 10.353 20.728 hybrid contribution 0.025 -1.717 0.532 1.798 sum 11.437 12.148 10.885 19.922 Atomic orbital electron populations 1.20392 0.91417 1.01089 1.00749 1.19802 0.96233 0.92656 1.11088 1.20327 0.92537 0.96309 1.02748 1.18055 0.92352 0.88465 1.12486 1.69058 1.14983 1.20625 1.24119 1.21108 0.91557 0.88785 0.84312 1.43160 1.36733 1.33759 1.28147 1.18680 0.96094 0.91777 0.96663 1.21444 0.94313 0.98175 0.97966 1.21511 0.98413 0.92078 0.96757 1.20104 0.99682 0.96583 0.97840 1.18390 0.79887 0.84832 0.82018 1.43548 1.40792 1.29588 1.25079 1.90809 1.69670 1.51186 1.35356 1.21225 0.93685 0.95991 0.98358 1.21273 0.98669 0.93144 0.97849 1.20890 0.97195 0.92718 1.04371 1.20929 0.94771 0.96490 1.06271 1.17848 0.92211 0.92735 0.90130 1.19703 1.03125 0.93661 1.34423 0.90051 1.26804 0.94719 1.04800 0.92120 1.69888 1.19174 1.32777 1.24011 0.85185 0.78693 0.75981 0.79821 1.19105 1.19378 1.17917 0.92454 0.92556 0.92768 0.88235 0.76821 0.76224 0.81985 0.80414 0.74818 0.75365 0.85047 0.85469 0.89087 0.87960 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.31 9.39 71.24 0.67 -2.64 16 2 C -0.20 -9.62 5.90 -19.69 -0.12 -9.73 16 3 C -0.10 -4.68 9.56 22.30 0.21 -4.47 16 4 C -0.01 -0.58 5.23 39.66 0.21 -0.37 16 5 N -0.56 -22.92 9.49 -180.31 -1.71 -24.63 16 6 C 0.41 13.06 7.50 136.08 1.02 14.08 16 7 N -0.87 -22.73 8.36 -50.94 -0.43 -23.16 16 8 C -0.03 -0.73 5.88 -20.04 -0.12 -0.85 16 9 C -0.10 -1.49 9.53 22.51 0.21 -1.27 16 10 C -0.07 -0.79 9.52 22.49 0.21 -0.57 16 11 C -0.14 -2.49 5.88 -20.03 -0.12 -2.61 16 12 C 0.56 10.34 8.04 86.79 0.70 11.03 16 13 N -0.83 -6.22 8.82 -175.59 -1.55 -7.77 16 14 O -0.59 -16.55 17.17 -3.86 -0.07 -16.61 16 15 C -0.07 -1.72 9.58 22.48 0.22 -1.50 16 16 C -0.09 -2.36 9.57 22.51 0.22 -2.14 16 17 C -0.13 -6.26 7.98 22.30 0.18 -6.08 16 18 C -0.16 -8.69 8.59 22.45 0.19 -8.50 16 19 C 0.07 3.93 5.56 -21.26 -0.12 3.81 16 20 C -0.48 -25.21 8.06 23.30 0.19 -25.02 16 21 H 0.08 4.08 6.91 -2.91 -0.02 4.06 16 22 C 0.03 1.46 5.23 85.27 0.45 1.91 16 23 N -0.83 -43.84 10.81 21.84 0.24 -43.60 16 24 Si 0.98 37.90 29.58 68.60 2.03 39.93 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 27 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 30 H 0.05 2.31 6.80 -2.39 -0.02 2.29 16 31 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.40 12.61 6.67 -92.71 -0.62 11.99 16 33 H 0.41 6.89 6.95 -92.71 -0.64 6.25 16 34 H 0.16 1.37 6.42 -2.91 -0.02 1.35 16 35 H 0.18 0.20 6.38 -2.91 -0.02 0.18 16 36 H 0.42 0.09 6.85 -92.70 -0.63 -0.54 16 37 H 0.41 2.22 8.93 -92.71 -0.83 1.39 16 38 H 0.13 3.19 7.64 -2.91 -0.02 3.17 16 39 H 0.13 3.86 7.54 -2.91 -0.02 3.84 16 40 H 0.09 4.12 8.01 -2.91 -0.02 4.10 16 41 H 0.10 5.66 6.16 -2.91 -0.02 5.65 16 42 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -74.06 354.37 1.12 -72.94 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -1.60 Total: 37.84 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 4.20 Total: -34.94 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -3.45 Total: -99.17 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.07 Total: -16.61 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Total: -74.06 1.12 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171257277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.602 kcal (2) G-P(sol) polarization free energy of solvation -74.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds