Wall clock time and date at job start Tue Mar 31 2020 14:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47185 * 89.99718 * 3 2 1 5 5 H 1.48502 * 109.47377 * 209.99992 * 3 2 1 6 6 H 1.48496 * 109.47090 * 329.99678 * 3 2 1 7 7 C 1.39909 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00236 * 17.41932 * 7 2 1 9 9 C 1.41019 * 119.99956 * 197.42136 * 7 2 1 10 10 C 1.40751 * 120.29400 * 29.10326 * 9 7 2 11 11 C 1.36406 * 119.96673 * 179.71254 * 10 9 7 12 12 C 1.39058 * 120.57497 * 0.56035 * 11 10 9 13 13 Cl 1.73601 * 119.70029 * 179.73567 * 12 11 10 14 14 C 1.38314 * 120.59507 * 359.71875 * 12 11 10 15 15 C 1.38681 * 120.01531 * 359.97438 * 14 12 11 16 16 N 1.38746 * 120.28609 * 179.97438 * 15 14 12 17 17 C 1.46503 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47363 * 179.97438 * 17 16 15 19 19 O 1.42910 * 109.46839 * 65.00001 * 18 17 16 20 20 C 1.42896 * 113.99881 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47271 * 270.00133 * 20 19 18 22 22 C 1.53003 * 109.47146 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46682 * 59.99727 * 22 21 20 24 24 C 1.52998 * 109.47553 * 300.00023 * 23 22 21 25 25 C 1.52994 * 109.47127 * 60.00189 * 24 23 22 26 26 H 0.97000 * 119.99471 * 175.40341 * 1 2 3 27 27 H 1.08003 * 120.01203 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.71396 * 180.28181 * 11 10 9 29 29 H 1.08000 * 119.99581 * 180.02562 * 14 12 11 30 30 H 0.97002 * 120.00108 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47105 * 300.00082 * 17 16 15 32 32 H 1.09005 * 109.47053 * 60.00157 * 17 16 15 33 33 H 1.08996 * 109.47337 * 184.99951 * 18 17 16 34 34 H 1.08996 * 109.47152 * 305.00540 * 18 17 16 35 35 H 1.09005 * 109.47082 * 30.00519 * 20 19 18 36 36 H 1.08995 * 109.46865 * 300.00127 * 21 20 19 37 37 H 1.09001 * 109.46868 * 60.00214 * 21 20 19 38 38 H 1.09000 * 109.46690 * 300.00428 * 22 21 20 39 39 H 1.08994 * 109.46749 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46499 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46986 * 60.00881 * 23 22 21 42 42 H 1.09004 * 109.46955 * 300.00364 * 24 23 22 43 43 H 1.08996 * 109.47228 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47208 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47105 * 59.99688 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4904 2.0465 1.4000 5 1 3.5406 1.4402 -0.7000 6 1 1.4405 2.6526 -0.7001 7 6 2.0085 -1.2116 0.0005 8 1 1.5058 -2.1256 -0.2790 9 6 3.3702 -1.2394 0.3662 10 6 3.8814 -0.2919 1.2728 11 6 5.1983 -0.3285 1.6264 12 6 6.0483 -1.2893 1.0896 13 17 7.7220 -1.3108 1.5502 14 6 5.5723 -2.2281 0.1923 15 6 4.2363 -2.2174 -0.1795 16 7 3.7529 -3.1561 -1.0795 17 6 4.6548 -4.1648 -1.6411 18 6 3.8757 -5.0699 -2.5974 19 8 3.4224 -4.3037 -3.7154 20 6 2.6798 -5.0587 -4.6747 21 6 3.6357 -5.6339 -5.7217 22 6 2.8407 -6.4429 -6.7485 23 6 1.8200 -5.5329 -7.4349 24 6 0.8640 -4.9577 -6.3880 25 6 1.6591 -4.1488 -5.3612 26 1 -0.4849 -0.8374 -0.0673 27 1 3.2302 0.4612 1.6916 28 1 5.5852 0.3976 2.3259 29 1 6.2409 -2.9702 -0.2183 30 1 2.8177 -3.1446 -1.3370 31 1 5.4604 -3.6700 -2.1838 32 1 5.0754 -4.7654 -0.8346 33 1 4.5241 -5.8734 -2.9466 34 1 3.0178 -5.4955 -2.0769 35 1 2.1590 -5.8735 -4.1716 36 1 4.1564 -4.8191 -6.2248 37 1 4.3625 -6.2825 -5.2326 38 1 2.3203 -7.2576 -6.2450 39 1 3.5218 -6.8530 -7.4941 40 1 1.2539 -6.1092 -8.1668 41 1 2.3404 -4.7182 -7.9385 42 1 0.3437 -5.7726 -5.8845 43 1 0.1367 -4.3099 -6.8770 44 1 0.9780 -3.7387 -4.6155 45 1 2.1795 -3.3340 -5.8646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171480707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:31 Heat of formation + Delta-G solvation = -64.956596 kcal Electronic energy + Delta-G solvation = -24919.898470 eV Core-core repulsion = 21347.270560 eV Total energy + Delta-G solvation = -3572.627909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.34373 -38.38146 -36.78405 -35.57862 -34.50980 -33.55269 -31.00122 -30.66453 -30.09173 -29.09398 -27.03305 -24.50388 -23.14237 -22.67072 -22.27636 -20.80534 -20.20689 -19.95956 -18.16451 -16.98201 -16.67087 -15.91296 -15.37754 -15.14282 -14.59076 -14.45862 -14.17394 -14.11764 -13.62805 -13.43599 -13.40070 -13.09852 -12.84278 -12.72772 -12.43697 -12.36922 -12.25537 -12.01050 -11.42638 -11.32268 -11.15169 -11.01417 -10.79241 -10.77278 -10.67511 -10.53926 -10.45552 -10.31557 -10.09344 -9.82448 -9.45198 -9.39809 -9.01701 -8.94524 -7.68068 -7.27597 -6.57883 -4.37931 2.49491 2.74756 3.23088 3.30841 3.38540 3.58563 3.59211 4.04813 4.33136 4.50728 4.52942 4.54230 4.73964 4.94238 5.00381 5.13204 5.20414 5.26918 5.29204 5.31514 5.35326 5.37684 5.44557 5.57297 5.75242 5.80041 5.86014 5.94601 5.97171 5.99289 6.01989 6.07301 6.17142 6.18020 6.22805 6.55947 6.75050 6.89062 7.14170 7.27570 7.36904 7.55321 7.64256 7.78211 8.05958 8.39375 8.48110 8.76721 8.80638 10.04163 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003621 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.030883 B = 7729.845094 C = 9773.401040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.044 3.956 3 Si 1.073 2.927 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.292 1.292 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.221 4.221 11 C -0.103 4.103 12 C -0.108 4.108 13 Cl -0.129 7.129 14 C -0.162 4.162 15 C 0.138 3.862 16 N -0.737 5.737 17 C 0.136 3.864 18 C 0.054 3.946 19 O -0.372 6.372 20 C 0.091 3.909 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.284 0.716 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.402 0.598 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 -10.811 -10.610 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.175 4.175 3 Si 0.900 3.100 4 H -0.204 1.204 5 H -0.186 1.186 6 H -0.220 1.220 7 C -0.539 4.539 8 H 0.092 0.908 9 C 0.056 3.944 10 C -0.241 4.241 11 C -0.123 4.123 12 C -0.135 4.135 13 Cl -0.101 7.101 14 C -0.187 4.187 15 C 0.037 3.963 16 N -0.372 5.372 17 C 0.010 3.990 18 C -0.023 4.023 19 O -0.291 6.291 20 C 0.033 3.967 21 C -0.179 4.179 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.156 4.156 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.238 0.762 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.555 -9.146 -10.612 14.453 hybrid contribution -0.083 -2.148 -0.025 2.150 sum 3.472 -11.294 -10.637 15.898 Atomic orbital electron populations 1.70583 1.07977 1.32800 1.32981 1.27190 0.95593 1.04301 0.90377 0.83573 0.75603 0.73049 0.77797 1.20394 1.18641 1.21971 1.20278 0.94768 0.96479 1.42369 0.90826 1.17485 0.93123 0.91648 0.92147 1.20519 0.95059 1.04714 1.03846 1.20036 0.93398 0.98008 1.00864 1.19851 0.82544 1.03603 1.07518 1.98227 1.20758 1.98642 1.92454 1.19854 0.94005 1.01619 1.03227 1.17672 0.91333 0.93854 0.93460 1.43894 1.11409 1.32801 1.49065 1.21125 0.93238 0.90437 0.94198 1.22771 0.98010 0.94166 0.87373 1.88044 1.72547 1.35992 1.32480 1.22070 0.91807 0.93751 0.89098 1.22044 0.98486 1.00079 0.97271 1.21492 0.97887 0.98016 0.98017 1.21577 0.97296 0.99297 0.97791 1.21502 0.97746 0.99618 0.96524 1.21587 0.97296 0.98375 0.98314 0.90499 0.86982 0.88108 0.87874 0.76206 0.92448 0.92014 0.92598 0.92997 0.92566 0.91049 0.92025 0.92086 0.91844 0.92020 0.91773 0.91996 0.91412 0.90990 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.68 13.66 55.55 0.76 -20.92 16 2 C 0.04 1.13 5.42 -17.33 -0.09 1.04 16 3 Si 1.07 24.43 24.90 -169.99 -4.23 20.20 16 4 H -0.28 -5.99 6.44 56.52 0.36 -5.63 16 5 H -0.26 -6.02 7.02 56.52 0.40 -5.62 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.10 8.80 -37.90 -0.33 -13.44 16 8 H 0.07 1.92 7.00 -52.49 -0.37 1.55 16 9 C 0.06 1.51 5.15 -106.63 -0.55 0.96 16 10 C -0.22 -5.28 7.21 -39.29 -0.28 -5.56 16 11 C -0.10 -2.28 9.74 -39.94 -0.39 -2.67 16 12 C -0.11 -2.31 6.33 -39.25 -0.25 -2.56 16 13 Cl -0.13 -2.40 28.94 -51.86 -1.50 -3.90 16 14 C -0.16 -3.47 9.07 -39.39 -0.36 -3.83 16 15 C 0.14 3.12 6.68 -83.30 -0.56 2.56 16 16 N -0.74 -14.51 5.58 -58.20 -0.32 -14.83 16 17 C 0.14 2.11 5.29 -4.04 -0.02 2.08 16 18 C 0.05 0.70 5.88 37.16 0.22 0.92 16 19 O -0.37 -5.45 9.93 -35.23 -0.35 -5.80 16 20 C 0.09 1.06 2.61 -26.73 -0.07 0.99 16 21 C -0.14 -1.40 5.54 -26.73 -0.15 -1.54 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 24 C -0.12 -1.05 5.92 -26.74 -0.16 -1.21 16 25 C -0.12 -1.36 5.57 -26.73 -0.15 -1.51 16 26 H 0.28 7.28 8.73 -40.82 -0.36 6.93 16 27 H 0.11 2.66 4.41 -52.48 -0.23 2.42 16 28 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.10 2.00 6.72 -52.49 -0.35 1.65 16 30 H 0.40 8.20 6.77 -40.82 -0.28 7.92 16 31 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 32 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 33 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -26.78 367.10 -10.69 -37.47 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.12 Total: 8.26 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -3.46 Total: -26.02 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.43 Total: -35.75 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.35 Total: -5.80 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.23 Total: 20.20 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -1.50 Total: -3.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.78 -10.69 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171480707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds