Wall clock time and date at job start Tue Mar 31 2020 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47185 * 89.99718 * 3 2 1 5 5 H 1.48502 * 109.47377 * 209.99992 * 3 2 1 6 6 H 1.48496 * 109.47090 * 329.99678 * 3 2 1 7 7 C 1.39909 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00236 * 17.41932 * 7 2 1 9 9 C 1.41019 * 119.99956 * 197.42136 * 7 2 1 10 10 C 1.40751 * 120.29400 * 29.10326 * 9 7 2 11 11 C 1.36406 * 119.96673 * 179.71254 * 10 9 7 12 12 C 1.39058 * 120.57497 * 0.56035 * 11 10 9 13 13 Cl 1.73601 * 119.70029 * 179.73567 * 12 11 10 14 14 C 1.38314 * 120.59507 * 359.71875 * 12 11 10 15 15 C 1.38681 * 120.01531 * 359.97438 * 14 12 11 16 16 N 1.38746 * 120.28609 * 179.97438 * 15 14 12 17 17 C 1.46503 * 119.99963 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47363 * 179.97438 * 17 16 15 19 19 O 1.42910 * 109.46839 * 65.00001 * 18 17 16 20 20 C 1.42896 * 113.99881 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47271 * 270.00133 * 20 19 18 22 22 C 1.53003 * 109.47146 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46682 * 59.99727 * 22 21 20 24 24 C 1.52998 * 109.47553 * 300.00023 * 23 22 21 25 25 C 1.52994 * 109.47127 * 60.00189 * 24 23 22 26 26 H 0.97000 * 119.99471 * 175.40341 * 1 2 3 27 27 H 1.08003 * 120.01203 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.71396 * 180.28181 * 11 10 9 29 29 H 1.08000 * 119.99581 * 180.02562 * 14 12 11 30 30 H 0.97002 * 120.00108 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47105 * 300.00082 * 17 16 15 32 32 H 1.09005 * 109.47053 * 60.00157 * 17 16 15 33 33 H 1.08996 * 109.47337 * 184.99951 * 18 17 16 34 34 H 1.08996 * 109.47152 * 305.00540 * 18 17 16 35 35 H 1.09005 * 109.47082 * 30.00519 * 20 19 18 36 36 H 1.08995 * 109.46865 * 300.00127 * 21 20 19 37 37 H 1.09001 * 109.46868 * 60.00214 * 21 20 19 38 38 H 1.09000 * 109.46690 * 300.00428 * 22 21 20 39 39 H 1.08994 * 109.46749 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46499 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.46986 * 60.00881 * 23 22 21 42 42 H 1.09004 * 109.46955 * 300.00364 * 24 23 22 43 43 H 1.08996 * 109.47228 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47208 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47105 * 59.99688 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4904 2.0465 1.4000 5 1 3.5406 1.4402 -0.7000 6 1 1.4405 2.6526 -0.7001 7 6 2.0085 -1.2116 0.0005 8 1 1.5058 -2.1256 -0.2790 9 6 3.3702 -1.2394 0.3662 10 6 3.8814 -0.2919 1.2728 11 6 5.1983 -0.3285 1.6264 12 6 6.0483 -1.2893 1.0896 13 17 7.7220 -1.3108 1.5502 14 6 5.5723 -2.2281 0.1923 15 6 4.2363 -2.2174 -0.1795 16 7 3.7529 -3.1561 -1.0795 17 6 4.6548 -4.1648 -1.6411 18 6 3.8757 -5.0699 -2.5974 19 8 3.4224 -4.3037 -3.7154 20 6 2.6798 -5.0587 -4.6747 21 6 3.6357 -5.6339 -5.7217 22 6 2.8407 -6.4429 -6.7485 23 6 1.8200 -5.5329 -7.4349 24 6 0.8640 -4.9577 -6.3880 25 6 1.6591 -4.1488 -5.3612 26 1 -0.4849 -0.8374 -0.0673 27 1 3.2302 0.4612 1.6916 28 1 5.5852 0.3976 2.3259 29 1 6.2409 -2.9702 -0.2183 30 1 2.8177 -3.1446 -1.3370 31 1 5.4604 -3.6700 -2.1838 32 1 5.0754 -4.7654 -0.8346 33 1 4.5241 -5.8734 -2.9466 34 1 3.0178 -5.4955 -2.0769 35 1 2.1590 -5.8735 -4.1716 36 1 4.1564 -4.8191 -6.2248 37 1 4.3625 -6.2825 -5.2326 38 1 2.3203 -7.2576 -6.2450 39 1 3.5218 -6.8530 -7.4941 40 1 1.2539 -6.1092 -8.1668 41 1 2.3404 -4.7182 -7.9385 42 1 0.3437 -5.7726 -5.8845 43 1 0.1367 -4.3099 -6.8770 44 1 0.9780 -3.7387 -4.6155 45 1 2.1795 -3.3340 -5.8646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171480707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:30 Heat of formation + Delta-G solvation = -78.075501 kcal Electronic energy + Delta-G solvation = -24920.467348 eV Core-core repulsion = 21347.270560 eV Total energy + Delta-G solvation = -3573.196788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.38023 -39.97397 -37.83014 -37.17114 -36.01342 -35.39232 -32.13154 -31.79504 -31.64007 -30.22814 -28.52002 -26.33656 -24.43658 -23.53088 -23.14957 -22.37781 -21.92777 -20.76367 -20.05696 -18.35811 -17.92137 -17.22109 -16.55231 -16.41126 -15.96294 -15.90364 -15.39356 -15.17811 -15.07416 -14.83004 -14.76743 -14.46325 -14.23645 -14.06576 -13.88962 -13.72471 -13.21731 -13.07075 -12.82285 -12.62440 -12.45430 -12.31814 -12.10000 -12.03570 -11.92110 -11.78806 -11.62212 -11.51030 -11.40320 -11.27012 -11.24437 -10.84889 -10.61111 -10.36775 -9.52537 -9.18703 -8.29350 -6.30319 0.67595 0.96354 1.39589 1.55619 1.60266 1.78191 2.20986 2.59480 2.65422 2.87964 3.47691 3.70129 3.76318 3.95685 4.04762 4.15501 4.22102 4.24115 4.27010 4.32079 4.40607 4.47967 4.52310 4.54005 4.62768 4.68618 4.79691 4.81078 4.92769 4.97221 5.04667 5.08649 5.17283 5.17976 5.20828 5.27330 5.34403 5.35119 5.47211 5.47939 5.67012 5.82439 5.97396 6.22993 6.31289 6.51226 6.70643 6.98947 7.07166 8.08996 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003621 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.030883 B = 7729.845094 C = 9773.401040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.013 3.987 3 Si 1.100 2.900 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.223 4.223 11 C -0.119 4.119 12 C -0.095 4.095 13 Cl -0.096 7.096 14 C -0.168 4.168 15 C 0.138 3.862 16 N -0.739 5.739 17 C 0.131 3.869 18 C 0.058 3.942 19 O -0.402 6.402 20 C 0.087 3.913 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.120 4.120 26 H 0.276 0.724 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.395 0.605 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -12.133 -11.057 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.200 4.200 3 Si 0.923 3.077 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.244 4.244 11 C -0.139 4.139 12 C -0.123 4.123 13 Cl -0.068 7.068 14 C -0.193 4.193 15 C 0.035 3.965 16 N -0.371 5.371 17 C 0.007 3.993 18 C -0.018 4.018 19 O -0.322 6.322 20 C 0.029 3.971 21 C -0.174 4.174 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.158 4.158 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.953 -10.499 -11.065 16.374 hybrid contribution -0.565 -1.855 0.137 1.944 sum 5.388 -12.355 -10.928 17.352 Atomic orbital electron populations 1.70641 1.08461 1.32270 1.36268 1.28003 0.95737 1.06333 0.89920 0.83225 0.74564 0.71141 0.78746 1.18440 1.19191 1.21414 1.20196 0.95656 0.95901 1.44289 0.92856 1.17670 0.93094 0.93305 0.93394 1.20670 0.95985 1.04290 1.03438 1.20271 0.92882 0.99058 1.01706 1.20134 0.84184 1.02242 1.05711 1.98243 1.17939 1.98518 1.92097 1.20108 0.93745 1.02221 1.03251 1.17906 0.91739 0.93562 0.93335 1.44128 1.11739 1.32946 1.48278 1.21378 0.92842 0.89954 0.95120 1.22777 0.98389 0.93964 0.86713 1.88005 1.73149 1.37684 1.33367 1.22235 0.92082 0.93614 0.89124 1.21998 0.98320 0.99953 0.97094 1.21496 0.97926 0.97822 0.97824 1.21580 0.97196 0.99378 0.97659 1.21491 0.97776 0.99538 0.96189 1.21608 0.97183 0.98588 0.98383 0.91346 0.87196 0.85802 0.85560 0.77048 0.92677 0.90269 0.89411 0.92860 0.91740 0.92242 0.91205 0.91246 0.90441 0.90284 0.92235 0.91275 0.91066 0.93247 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.98 13.66 21.82 0.30 -46.68 16 2 C 0.01 0.69 5.42 85.24 0.46 1.15 16 3 Si 1.10 49.95 24.90 68.60 1.71 51.65 16 4 H -0.26 -10.85 6.44 99.48 0.64 -10.21 16 5 H -0.27 -12.19 7.02 99.48 0.70 -11.49 16 6 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.53 -28.38 8.80 23.36 0.21 -28.17 16 8 H 0.05 2.97 7.00 -2.91 -0.02 2.95 16 9 C 0.03 1.52 5.15 -21.16 -0.11 1.41 16 10 C -0.22 -10.55 7.21 22.46 0.16 -10.39 16 11 C -0.12 -5.02 9.74 22.04 0.21 -4.81 16 12 C -0.09 -3.83 6.33 22.48 0.14 -3.69 16 13 Cl -0.10 -3.24 28.94 -2.72 -0.08 -3.32 16 14 C -0.17 -6.84 9.07 22.39 0.20 -6.64 16 15 C 0.14 6.15 6.68 38.98 0.26 6.41 16 16 N -0.74 -29.05 5.58 -338.06 -1.89 -30.94 16 17 C 0.13 3.87 5.29 86.38 0.46 4.33 16 18 C 0.06 1.43 5.88 71.98 0.42 1.85 16 19 O -0.40 -11.70 9.93 -148.98 -1.48 -13.18 16 20 C 0.09 1.98 2.61 30.60 0.08 2.06 16 21 C -0.14 -2.48 5.54 30.59 0.17 -2.31 16 22 C -0.11 -1.57 5.92 30.60 0.18 -1.39 16 23 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 24 C -0.11 -1.95 5.92 30.59 0.18 -1.77 16 25 C -0.12 -2.84 5.57 30.59 0.17 -2.67 16 26 H 0.28 15.05 8.73 -92.71 -0.81 14.24 16 27 H 0.11 5.17 4.41 -2.91 -0.01 5.15 16 28 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.13 4.49 6.72 -2.91 -0.02 4.47 16 30 H 0.39 16.65 6.77 -92.71 -0.63 16.03 16 31 H 0.06 1.67 7.94 -2.39 -0.02 1.65 16 32 H 0.08 2.08 7.94 -2.38 -0.02 2.07 16 33 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 34 H 0.05 1.29 8.09 -2.39 -0.02 1.27 16 35 H 0.06 1.35 7.79 -2.38 -0.02 1.33 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.15 7.87 -2.39 -0.02 1.13 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -58.25 367.10 2.19 -56.06 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.25 Total: 32.59 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.38 Total: -46.19 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.59 Total: -77.61 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -1.48 Total: -13.18 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.71 Total: 51.65 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.32 kcal Total: -58.25 2.19 -56.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171480707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.015 kcal (2) G-P(sol) polarization free energy of solvation -58.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds