Wall clock time and date at job start Tue Mar 31 2020 15:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.89596 * 2 1 4 4 C 1.54381 * 109.82971 * 120.93571 * 2 1 3 5 5 C 1.55307 * 102.25398 * 98.15810 * 4 2 1 6 6 H 1.09001 * 111.12383 * 276.17628 * 5 4 2 7 7 N 1.46898 * 111.12844 * 152.05002 * 5 4 2 8 8 C 1.46897 * 110.99913 * 74.78250 * 7 5 4 9 9 C 1.50707 * 109.47020 * 71.62304 * 8 7 5 10 10 H 1.07992 * 119.99847 * 355.25539 * 9 8 7 11 11 C 1.37881 * 119.99587 * 175.25050 * 9 8 7 12 12 N 1.31514 * 120.00372 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99409 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47088 * 60.00592 * 13 11 9 15 15 H 1.48508 * 109.46710 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47352 * 300.00078 * 13 11 9 17 17 C 1.46900 * 110.99710 * 310.83181 * 7 5 4 18 18 C 1.50704 * 109.46702 * 200.61440 * 17 7 5 19 19 C 1.38239 * 119.98919 * 89.99830 * 18 17 7 20 20 C 1.38214 * 120.01249 * 179.72023 * 19 18 17 21 21 C 1.38355 * 119.98881 * 0.25589 * 20 19 18 22 22 Cl 1.73601 * 120.01363 * 179.97438 * 21 20 19 23 23 C 1.38350 * 119.97193 * 0.02562 * 21 20 19 24 24 C 1.38220 * 119.98794 * 359.97438 * 23 21 20 25 25 C 1.54951 * 100.93907 * 34.12848 * 5 4 2 26 26 O 1.43241 * 109.82654 * 239.06933 * 2 1 3 27 27 H 1.09001 * 109.46797 * 299.06289 * 1 2 3 28 28 H 1.09000 * 109.46792 * 59.06522 * 1 2 3 29 29 H 1.09000 * 109.47136 * 179.06289 * 1 2 3 30 30 H 1.08998 * 109.47126 * 180.93153 * 3 2 1 31 31 H 1.08997 * 109.47246 * 300.93430 * 3 2 1 32 32 H 1.09003 * 109.46502 * 60.93953 * 3 2 1 33 33 H 1.08997 * 110.84942 * 339.96436 * 4 2 1 34 34 H 1.08999 * 111.01995 * 216.42573 * 4 2 1 35 35 H 1.09005 * 109.47252 * 191.62674 * 8 7 5 36 36 H 1.09000 * 109.47245 * 311.62830 * 8 7 5 37 37 H 0.96995 * 120.00193 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47501 * 80.61522 * 17 7 5 39 39 H 1.08994 * 109.47337 * 320.60590 * 17 7 5 40 40 H 1.07999 * 119.99242 * 0.02562 * 19 18 17 41 41 H 1.07995 * 120.00713 * 180.23396 * 20 19 18 42 42 H 1.08000 * 120.00999 * 179.97438 * 23 21 20 43 43 H 1.07998 * 119.99329 * 180.02562 * 24 23 21 44 44 H 1.09003 * 110.30840 * 82.47705 * 25 5 4 45 45 H 1.09001 * 110.30346 * 204.64077 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7466 1.2457 5 6 2.3682 -2.1570 0.6767 6 1 1.4732 -2.7788 0.6511 7 7 3.4403 -2.8091 1.4403 8 6 2.9475 -3.2828 2.7405 9 6 2.0456 -4.4722 2.5329 10 1 1.7960 -4.7924 1.5322 11 6 1.5393 -5.1515 3.6207 12 7 1.8429 -4.7613 4.8394 13 14 0.4219 -6.6262 3.3633 14 1 1.1481 -7.6693 2.5952 15 1 0.0152 -7.1751 4.6819 16 1 -0.7860 -6.2064 2.6085 17 6 4.5890 -1.9090 1.6088 18 6 5.8202 -2.7193 1.9227 19 6 6.6252 -3.1786 0.8970 20 6 7.7577 -3.9169 1.1846 21 6 8.0828 -4.2007 2.4992 22 17 9.5047 -5.1285 2.8611 23 6 7.2737 -3.7456 3.5250 24 6 6.1414 -3.0074 3.2361 25 6 2.8407 -1.7980 -0.7547 26 8 2.0159 -0.6926 -1.1559 27 1 -0.3633 0.4992 0.8983 28 1 -0.3633 0.5283 -0.8815 29 1 -0.3633 -1.0275 -0.0168 30 1 3.1405 1.4306 -0.0167 31 1 1.6776 1.9601 -0.8814 32 1 1.7049 1.9501 0.8983 33 1 1.2851 -0.8017 2.0165 34 1 2.9565 -0.2747 1.6335 35 1 3.7921 -3.5719 3.3659 36 1 2.3893 -2.4847 3.2302 37 1 1.4870 -5.2394 5.6045 38 1 4.3912 -1.2168 2.4272 39 1 4.7486 -1.3474 0.6884 40 1 6.3717 -2.9564 -0.1290 41 1 8.3885 -4.2725 0.3834 42 1 7.5267 -3.9671 4.5513 43 1 5.5099 -2.6518 4.0369 44 1 3.8900 -1.5029 -0.7438 45 1 2.6919 -2.6442 -1.4255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172288811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:35 Heat of formation + Delta-G solvation = -42.203185 kcal Electronic energy + Delta-G solvation = -25817.282095 eV Core-core repulsion = 22245.640847 eV Total energy + Delta-G solvation = -3571.641247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34054 -40.20208 -37.93757 -37.19061 -34.74591 -34.09166 -32.67222 -31.99782 -30.88312 -28.80160 -28.20464 -26.82248 -26.21203 -24.17383 -23.52856 -22.58131 -20.99958 -20.65396 -18.45140 -18.13933 -17.58275 -16.88236 -16.66654 -16.38787 -16.06678 -15.95044 -15.24184 -15.00252 -14.88676 -14.64268 -14.38824 -14.30719 -14.19779 -14.02618 -13.79261 -13.41094 -13.18797 -13.08583 -12.84579 -12.69892 -12.66591 -12.50481 -12.37969 -12.32535 -12.20283 -12.08170 -11.73701 -11.71495 -11.55994 -11.44376 -11.24271 -10.56710 -10.40146 -9.90708 -9.50655 -8.97985 -8.17810 -6.24902 0.21356 0.41341 1.17779 1.39838 1.41415 1.48745 2.39592 2.62111 2.86024 3.14918 3.30200 3.70725 3.80702 3.88433 3.93068 3.98757 4.03652 4.13969 4.18068 4.29275 4.33493 4.44493 4.57116 4.64992 4.73225 4.77205 4.78052 4.81002 4.86572 4.93917 4.97191 5.03184 5.05632 5.15911 5.26386 5.27334 5.29302 5.31306 5.34433 5.41195 5.64817 5.69996 5.90691 6.09147 6.12629 6.37695 6.60125 6.88901 7.43125 8.91963 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008461 B = 0.004799 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.431465 B = 5833.545179 C = 8380.544658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 C -0.147 4.147 4 C -0.174 4.174 5 C 0.062 3.938 6 H 0.076 0.924 7 N -0.518 5.518 8 C 0.208 3.792 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.954 3.046 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.087 3.913 18 C -0.070 4.070 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.045 4.045 22 Cl -0.073 7.073 23 C -0.120 4.120 24 C -0.106 4.106 25 C 0.063 3.937 26 O -0.386 6.386 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.024 0.976 36 H -0.033 1.033 37 H 0.262 0.738 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 8.915 -8.447 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.062 3.938 3 C -0.204 4.204 4 C -0.213 4.213 5 C -0.048 4.048 6 H 0.094 0.906 7 N -0.241 5.241 8 C 0.082 3.918 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.190 4.190 12 N -0.570 5.570 13 Si 0.780 3.220 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.040 4.040 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.072 4.072 22 Cl -0.045 7.045 23 C -0.138 4.138 24 C -0.125 4.125 25 C -0.014 4.014 26 O -0.306 6.306 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.042 0.958 36 H -0.015 1.015 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.133 0.867 44 H 0.094 0.906 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.323 8.442 -8.710 14.711 hybrid contribution -0.931 -0.565 1.414 1.785 sum 7.392 7.877 -7.295 13.035 Atomic orbital electron populations 1.22067 0.93765 1.02055 1.02933 1.22086 0.94530 0.93020 0.84120 1.22053 1.01516 0.93819 1.03031 1.23765 1.02129 0.97134 0.98263 1.23252 0.94853 0.92903 0.93753 0.90597 1.62047 1.06022 1.35933 1.20083 1.19457 0.94030 0.93064 0.85255 1.21397 1.28268 1.13364 0.92521 0.92592 1.25704 0.98175 1.00181 0.94904 1.70035 1.46382 1.42130 0.98405 0.85667 0.79360 0.79800 0.77202 1.19807 1.21020 1.19481 1.21174 0.88603 0.92951 1.01316 1.19987 0.95673 0.98227 0.93190 1.21166 0.93229 0.96543 0.99852 1.21253 0.98075 0.98978 0.94797 1.20989 0.91215 0.99836 0.95178 1.98342 1.38605 1.72316 1.95209 1.21093 0.94656 0.98685 0.99404 1.21099 0.95979 0.98466 0.96953 1.23413 0.94865 0.88950 0.94161 1.88383 1.67742 1.43815 1.30621 0.90692 0.91037 0.93568 0.92107 0.91260 0.90587 0.91709 0.89926 0.95836 1.01548 0.92912 0.94623 0.88113 0.83068 0.82832 0.84692 0.86710 0.90553 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.73 71.98 0.63 -3.14 16 2 C 0.10 2.69 1.27 -10.32 -0.01 2.68 16 3 C -0.15 -3.08 8.75 71.98 0.63 -2.45 16 4 C -0.17 -5.37 4.75 31.86 0.15 -5.21 16 5 C 0.06 2.18 3.01 46.38 0.14 2.32 16 6 H 0.08 3.13 7.11 -2.39 -0.02 3.11 16 7 N -0.52 -20.02 4.40 -871.54 -3.83 -23.85 16 8 C 0.21 10.22 4.47 85.56 0.38 10.60 16 9 C -0.52 -28.22 8.55 25.60 0.22 -28.00 16 10 H 0.06 3.04 7.44 -2.91 -0.02 3.02 16 11 C 0.01 0.48 5.46 84.66 0.46 0.95 16 12 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 13 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 C 0.09 2.73 3.70 85.56 0.32 3.05 16 18 C -0.07 -2.20 5.19 -19.86 -0.10 -2.31 16 19 C -0.09 -2.38 9.70 22.26 0.22 -2.16 16 20 C -0.11 -2.84 9.83 22.29 0.22 -2.62 16 21 C -0.05 -1.27 6.32 22.32 0.14 -1.12 16 22 Cl -0.07 -1.81 28.96 -2.72 -0.08 -1.89 16 23 C -0.12 -3.66 9.83 22.29 0.22 -3.44 16 24 C -0.11 -3.57 8.31 22.27 0.19 -3.38 16 25 C 0.06 1.81 7.27 72.65 0.53 2.34 16 26 O -0.39 -11.28 10.68 -148.98 -1.59 -12.88 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 34 H 0.08 2.41 5.61 -2.39 -0.01 2.40 16 35 H 0.02 1.25 5.61 -2.38 -0.01 1.23 16 36 H -0.03 -1.76 7.40 -2.39 -0.02 -1.78 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.04 1.16 6.91 -2.39 -0.02 1.15 16 39 H 0.10 2.63 5.62 -2.39 -0.01 2.61 16 40 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 42 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 43 H 0.11 4.13 7.44 -2.91 -0.02 4.11 16 44 H 0.08 1.95 5.87 -2.39 -0.01 1.94 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -61.04 369.55 2.11 -58.93 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.98 Total: 19.55 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.32 Total: -31.90 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.55 Total: -77.84 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.59 Total: -12.88 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -61.04 2.11 -58.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172288811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.731 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds