Wall clock time and date at job start Tue Mar 31 2020 14:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99986 * 2 1 4 4 H 1.48506 * 109.47366 * 269.99673 * 3 2 1 5 5 H 1.48495 * 109.47308 * 29.99659 * 3 2 1 6 6 H 1.48499 * 109.47408 * 149.99908 * 3 2 1 7 7 C 1.37879 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00170 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47311 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47118 * 300.00152 * 11 10 9 13 13 N 1.46903 * 109.46774 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99673 * 155.00102 * 13 12 11 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 12 16 16 O 1.42897 * 109.46881 * 64.99925 * 15 14 13 17 17 C 1.35923 * 117.00117 * 179.97438 * 16 15 14 18 18 C 1.38721 * 120.03953 * 359.73043 * 17 16 15 19 19 C 1.38142 * 119.95226 * 179.78891 * 18 17 16 20 20 C 1.38358 * 120.04649 * 0.46292 * 19 18 17 21 21 Cl 1.73608 * 119.95947 * 179.76929 * 20 19 18 22 22 C 1.38363 * 120.08727 * 359.78552 * 20 19 18 23 23 C 1.38145 * 120.03912 * 359.97438 * 22 20 19 24 24 C 1.53003 * 109.46879 * 59.99971 * 12 11 10 25 25 C 1.52997 * 109.47114 * 299.99575 * 24 12 11 26 26 H 0.97005 * 120.00176 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47195 * 59.99855 * 9 7 2 28 28 H 1.08999 * 109.47146 * 59.99846 * 10 9 7 29 29 H 1.09004 * 109.47182 * 300.00135 * 10 9 7 30 30 H 1.09003 * 109.47230 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47046 * 59.99901 * 11 10 9 32 32 H 1.08999 * 109.46957 * 299.99804 * 12 11 10 33 33 H 1.00906 * 110.99345 * 278.95232 * 13 12 11 34 34 H 1.09001 * 109.47062 * 59.99745 * 14 13 12 35 35 H 1.08993 * 109.47084 * 299.99192 * 14 13 12 36 36 H 1.08992 * 109.47046 * 184.99823 * 15 14 13 37 37 H 1.08997 * 109.47395 * 305.00364 * 15 14 13 38 38 H 1.08000 * 120.02506 * 0.02562 * 18 17 16 39 39 H 1.08003 * 119.97679 * 180.22422 * 19 18 17 40 40 H 1.07999 * 119.98332 * 179.97438 * 22 20 19 41 41 H 1.08005 * 120.02288 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.47007 * 59.99869 * 24 12 11 43 43 H 1.08996 * 109.46579 * 179.97438 * 24 12 11 44 44 H 1.08999 * 109.47419 * 300.00594 * 25 24 12 45 45 H 1.08994 * 109.47247 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -1.9163 -1.2476 13 7 7.5305 -1.9170 -1.2479 14 6 8.0566 -1.7985 -2.6143 15 6 9.5862 -1.8020 -2.5739 16 8 10.0472 -3.0688 -2.0998 17 6 11.3922 -3.2394 -2.0037 18 6 12.2502 -2.2106 -2.3639 19 6 13.6168 -2.3845 -2.2613 20 6 14.1302 -3.5871 -1.8089 21 17 15.8481 -3.8052 -1.6866 22 6 13.2761 -4.6162 -1.4540 23 6 11.9088 -4.4445 -1.5504 24 6 5.5515 -0.4738 -1.2487 25 6 4.0215 -0.4738 -1.2487 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.6585 -3.1510 -0.8875 29 1 3.6578 -3.1498 0.8925 30 1 5.9148 -3.6643 0.0035 31 1 5.9148 -2.1220 0.8918 32 1 5.6981 -2.4309 -2.1372 33 1 7.8924 -1.1841 -0.6562 34 1 7.7074 -0.8664 -3.0586 35 1 7.7068 -2.6397 -3.2125 36 1 9.9764 -1.6253 -3.5761 37 1 9.9338 -1.0152 -1.9046 38 1 11.8501 -1.2731 -2.7205 39 1 14.2851 -1.5825 -2.5382 40 1 13.6786 -5.5543 -1.1015 41 1 11.2424 -5.2481 -1.2738 42 1 5.9148 0.0407 -0.3591 43 1 5.9152 0.0394 -2.1389 44 1 3.6581 -0.9884 -2.1383 45 1 3.6581 0.5538 -1.2500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:33 Heat of formation + Delta-G solvation = -34.674227 kcal Electronic energy + Delta-G solvation = -24150.854708 eV Core-core repulsion = 20579.539941 eV Total energy + Delta-G solvation = -3571.314767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50375 -38.68450 -37.97838 -36.55229 -35.15198 -32.51613 -31.61817 -30.72827 -30.14363 -29.54629 -27.59927 -24.34622 -23.47401 -22.79136 -22.06704 -21.66670 -20.66822 -19.03818 -18.73210 -16.95479 -16.63613 -16.46883 -16.33412 -15.55235 -15.10346 -14.84328 -14.42831 -14.03107 -13.92569 -13.72717 -13.60903 -13.28443 -13.07087 -12.94149 -12.68516 -12.57591 -12.30552 -11.93616 -11.83606 -11.66534 -11.54942 -11.28231 -11.05373 -10.93587 -10.80579 -10.59866 -10.40928 -10.06918 -9.84168 -9.57118 -9.53169 -9.13379 -8.90307 -8.53724 -8.46119 -8.20462 -6.06357 -4.04610 0.81859 0.86114 1.81681 2.86821 3.23511 3.24564 3.35773 3.38423 4.07314 4.30739 4.38528 4.40795 4.63351 4.74200 4.76535 4.93271 5.02404 5.07757 5.14425 5.25058 5.28296 5.39751 5.49132 5.56604 5.61159 5.68681 5.83800 5.87642 5.90543 6.00979 6.12841 6.17484 6.19381 6.21721 6.39609 6.51399 6.63066 6.73296 6.91402 7.00672 7.05170 7.14559 7.32670 7.42668 7.59095 7.80459 8.55115 8.98876 9.56827 11.07164 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.001884 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.006255 B =14858.122371 C =15218.079229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.099 4.099 11 C -0.103 4.103 12 C 0.092 3.908 13 N -0.681 5.681 14 C 0.058 3.942 15 C 0.062 3.938 16 O -0.290 6.290 17 C 0.143 3.857 18 C -0.203 4.203 19 C -0.069 4.069 20 C -0.079 4.079 21 Cl -0.077 7.077 22 C -0.070 4.070 23 C -0.141 4.141 24 C -0.149 4.149 25 C -0.115 4.115 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.337 0.663 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.040 -5.017 -6.309 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.017 4.017 13 N -0.311 5.311 14 C -0.072 4.072 15 C -0.014 4.014 16 O -0.202 6.202 17 C 0.096 3.904 18 C -0.222 4.222 19 C -0.088 4.088 20 C -0.106 4.106 21 Cl -0.048 7.048 22 C -0.088 4.088 23 C -0.160 4.160 24 C -0.188 4.188 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 28.918 -5.756 -6.249 30.140 hybrid contribution 0.412 2.307 -0.376 2.373 sum 29.330 -3.449 -6.625 30.266 Atomic orbital electron populations 1.69905 1.06277 1.26806 1.51177 1.25046 0.94680 0.99025 0.94659 0.86823 0.79890 0.83687 0.77647 1.20858 1.22673 1.19132 1.21117 0.89080 0.94366 1.50378 0.90907 1.19152 0.96344 0.92114 0.92897 1.21446 0.92306 0.98851 1.01108 1.21530 0.96767 0.99494 0.96362 1.21613 0.85047 0.95265 0.99777 1.60669 1.08401 1.53017 1.08968 1.22024 0.91135 1.01635 0.92396 1.22964 0.95599 0.84141 0.98669 1.86267 1.17739 1.35860 1.80372 1.19188 0.83367 0.93940 0.93873 1.21239 0.93331 1.00003 1.07619 1.20820 0.94898 0.95885 0.97175 1.20757 0.84705 0.96709 1.08445 1.98362 1.12075 1.97356 1.97025 1.20872 0.91877 0.98310 0.97771 1.20441 0.94512 0.96778 1.04245 1.22313 0.99236 0.96939 1.00297 1.21907 0.91610 1.00215 1.01577 0.92775 0.95723 0.92847 0.92545 0.92369 0.92700 0.90631 0.84523 0.92868 0.89726 0.91540 0.91910 0.84665 0.84863 0.84349 0.84035 0.92506 0.93686 0.92257 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 21.94 24.37 -169.99 -4.14 17.79 16 4 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 7 C -0.51 -14.23 9.14 -34.44 -0.31 -14.55 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.01 0.31 1.69 -91.77 -0.16 0.16 16 10 C -0.10 -1.92 5.14 -26.73 -0.14 -2.06 16 11 C -0.10 -1.66 5.53 -26.73 -0.15 -1.81 16 12 C 0.09 1.35 2.47 -67.71 -0.17 1.18 16 13 N -0.68 -8.31 6.20 -106.72 -0.66 -8.97 16 14 C 0.06 0.57 5.87 -3.82 -0.02 0.55 16 15 C 0.06 0.51 5.02 37.16 0.19 0.70 16 16 O -0.29 -3.07 10.08 -19.50 -0.20 -3.27 16 17 C 0.14 1.37 6.69 -39.22 -0.26 1.11 16 18 C -0.20 -1.64 9.04 -39.44 -0.36 -2.00 16 19 C -0.07 -0.54 9.82 -39.57 -0.39 -0.93 16 20 C -0.08 -0.66 6.32 -39.49 -0.25 -0.91 16 21 Cl -0.08 -0.61 28.95 -51.86 -1.50 -2.11 16 22 C -0.07 -0.55 9.82 -39.57 -0.39 -0.94 16 23 C -0.14 -1.24 9.99 -39.44 -0.39 -1.64 16 24 C -0.15 -2.41 5.17 -26.73 -0.14 -2.55 16 25 C -0.12 -2.38 4.68 -26.73 -0.13 -2.50 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.13 7.80 -51.93 -0.40 0.73 16 33 H 0.34 3.88 8.47 -39.29 -0.33 3.54 16 34 H 0.05 0.49 7.44 -51.93 -0.39 0.10 16 35 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.07 0.43 7.65 -51.93 -0.40 0.03 16 37 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 38 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 43 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.04 0.99 3.28 -51.93 -0.17 0.82 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -30.46 366.53 -10.37 -40.83 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.00 Total: 1.47 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.16 Total: -24.37 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.11 Total: -35.86 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.20 Total: -3.27 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.79 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.46 -10.37 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.154 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds