Wall clock time and date at job start Tue Mar 31 2020 14:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99986 * 2 1 4 4 H 1.48506 * 109.47366 * 269.99673 * 3 2 1 5 5 H 1.48495 * 109.47308 * 29.99659 * 3 2 1 6 6 H 1.48499 * 109.47408 * 149.99908 * 3 2 1 7 7 C 1.37879 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00170 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47311 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47118 * 300.00152 * 11 10 9 13 13 N 1.46903 * 109.46774 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99673 * 155.00102 * 13 12 11 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 12 16 16 O 1.42897 * 109.46881 * 64.99925 * 15 14 13 17 17 C 1.35923 * 117.00117 * 179.97438 * 16 15 14 18 18 C 1.38721 * 120.03953 * 359.73043 * 17 16 15 19 19 C 1.38142 * 119.95226 * 179.78891 * 18 17 16 20 20 C 1.38358 * 120.04649 * 0.46292 * 19 18 17 21 21 Cl 1.73608 * 119.95947 * 179.76929 * 20 19 18 22 22 C 1.38363 * 120.08727 * 359.78552 * 20 19 18 23 23 C 1.38145 * 120.03912 * 359.97438 * 22 20 19 24 24 C 1.53003 * 109.46879 * 59.99971 * 12 11 10 25 25 C 1.52997 * 109.47114 * 299.99575 * 24 12 11 26 26 H 0.97005 * 120.00176 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47195 * 59.99855 * 9 7 2 28 28 H 1.08999 * 109.47146 * 59.99846 * 10 9 7 29 29 H 1.09004 * 109.47182 * 300.00135 * 10 9 7 30 30 H 1.09003 * 109.47230 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47046 * 59.99901 * 11 10 9 32 32 H 1.08999 * 109.46957 * 299.99804 * 12 11 10 33 33 H 1.00906 * 110.99345 * 278.95232 * 13 12 11 34 34 H 1.09001 * 109.47062 * 59.99745 * 14 13 12 35 35 H 1.08993 * 109.47084 * 299.99192 * 14 13 12 36 36 H 1.08992 * 109.47046 * 184.99823 * 15 14 13 37 37 H 1.08997 * 109.47395 * 305.00364 * 15 14 13 38 38 H 1.08000 * 120.02506 * 0.02562 * 18 17 16 39 39 H 1.08003 * 119.97679 * 180.22422 * 19 18 17 40 40 H 1.07999 * 119.98332 * 179.97438 * 22 20 19 41 41 H 1.08005 * 120.02288 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.47007 * 59.99869 * 24 12 11 43 43 H 1.08996 * 109.46579 * 179.97438 * 24 12 11 44 44 H 1.08999 * 109.47419 * 300.00594 * 25 24 12 45 45 H 1.08994 * 109.47247 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -1.9163 -1.2476 13 7 7.5305 -1.9170 -1.2479 14 6 8.0566 -1.7985 -2.6143 15 6 9.5862 -1.8020 -2.5739 16 8 10.0472 -3.0688 -2.0998 17 6 11.3922 -3.2394 -2.0037 18 6 12.2502 -2.2106 -2.3639 19 6 13.6168 -2.3845 -2.2613 20 6 14.1302 -3.5871 -1.8089 21 17 15.8481 -3.8052 -1.6866 22 6 13.2761 -4.6162 -1.4540 23 6 11.9088 -4.4445 -1.5504 24 6 5.5515 -0.4738 -1.2487 25 6 4.0215 -0.4738 -1.2487 26 1 -0.4851 0.8401 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.6585 -3.1510 -0.8875 29 1 3.6578 -3.1498 0.8925 30 1 5.9148 -3.6643 0.0035 31 1 5.9148 -2.1220 0.8918 32 1 5.6981 -2.4309 -2.1372 33 1 7.8924 -1.1841 -0.6562 34 1 7.7074 -0.8664 -3.0586 35 1 7.7068 -2.6397 -3.2125 36 1 9.9764 -1.6253 -3.5761 37 1 9.9338 -1.0152 -1.9046 38 1 11.8501 -1.2731 -2.7205 39 1 14.2851 -1.5825 -2.5382 40 1 13.6786 -5.5543 -1.1015 41 1 11.2424 -5.2481 -1.2738 42 1 5.9148 0.0407 -0.3591 43 1 5.9152 0.0394 -2.1389 44 1 3.6581 -0.9884 -2.1383 45 1 3.6581 0.5538 -1.2500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:33 Heat of formation + Delta-G solvation = -52.734208 kcal Electronic energy + Delta-G solvation = -24151.637847 eV Core-core repulsion = 20579.539941 eV Total energy + Delta-G solvation = -3572.097907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12802 -39.93801 -38.70553 -37.19296 -36.38256 -34.40084 -32.30958 -31.84182 -31.58308 -30.39866 -28.76137 -25.88826 -24.35129 -23.56667 -23.39401 -22.38159 -22.11517 -20.56145 -19.34940 -18.75548 -17.61185 -17.31210 -17.02283 -16.85559 -16.12338 -15.72772 -15.52935 -15.15933 -14.94789 -14.80705 -14.52683 -14.49529 -14.39299 -14.24276 -13.93273 -13.58489 -13.25040 -13.19400 -13.05284 -12.77499 -12.48619 -12.47556 -12.14308 -12.06427 -11.89812 -11.80948 -11.64901 -11.59665 -11.51962 -11.20322 -10.91515 -10.75045 -10.58687 -10.11005 -9.22736 -9.08122 -8.29137 -6.32229 0.22999 0.25541 1.21915 1.28190 1.34705 1.45702 2.25797 2.32518 2.63567 3.06134 3.16426 3.73525 3.84270 3.86225 3.98455 4.05439 4.14693 4.18390 4.28833 4.36601 4.44321 4.46101 4.53042 4.53298 4.64525 4.71956 4.76294 4.82192 4.85682 4.91819 4.94976 5.02341 5.05339 5.21101 5.24665 5.25885 5.28522 5.38656 5.44515 5.60217 5.62413 5.72306 5.83821 6.11561 6.34758 6.43505 6.55842 6.76003 7.33108 8.88016 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.001884 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.006255 B =14858.122371 C =15218.079229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.302 1.302 6 H -0.245 1.245 7 C -0.519 4.519 8 H 0.029 0.971 9 C 0.013 3.987 10 C -0.095 4.095 11 C -0.094 4.094 12 C 0.102 3.898 13 N -0.682 5.682 14 C 0.057 3.943 15 C 0.061 3.939 16 O -0.311 6.311 17 C 0.127 3.873 18 C -0.202 4.202 19 C -0.073 4.073 20 C -0.090 4.090 21 Cl -0.076 7.076 22 C -0.072 4.072 23 C -0.154 4.154 24 C -0.140 4.140 25 C -0.114 4.114 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.445 -3.711 -7.096 33.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.231 1.231 6 H -0.169 1.169 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.008 4.008 13 N -0.313 5.313 14 C -0.072 4.072 15 C -0.014 4.014 16 O -0.225 6.225 17 C 0.081 3.919 18 C -0.221 4.221 19 C -0.091 4.091 20 C -0.116 4.116 21 Cl -0.048 7.048 22 C -0.091 4.091 23 C -0.172 4.172 24 C -0.179 4.179 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 32.361 -4.466 -7.042 33.418 hybrid contribution -0.695 1.776 -0.121 1.910 sum 31.666 -2.691 -7.164 32.577 Atomic orbital electron populations 1.70070 1.08298 1.27885 1.53183 1.25957 0.95457 1.03207 0.94416 0.85746 0.79104 0.78433 0.78514 1.19327 1.23059 1.16885 1.21501 0.92081 0.92711 1.49421 0.95274 1.19123 0.92874 0.94615 0.93975 1.21353 0.95179 0.96488 1.00323 1.21411 0.93648 1.00612 0.97556 1.21389 0.86769 0.93989 0.98640 1.60582 1.06404 1.53595 1.10681 1.22091 0.92215 1.02053 0.90874 1.23051 0.94423 0.83741 1.00159 1.86226 1.18340 1.37036 1.80870 1.19369 0.83275 0.94600 0.94671 1.21440 0.93213 1.00358 1.07054 1.21070 0.95212 0.96154 0.96691 1.20934 0.84841 0.97157 1.08691 1.98362 1.11988 1.97377 1.97034 1.21046 0.91626 0.98932 0.97481 1.20593 0.94957 0.97023 1.04662 1.22242 0.95379 0.98383 1.01858 1.21773 0.95199 0.98624 0.99648 0.92727 0.96178 0.93536 0.93647 0.91304 0.92341 0.90874 0.83716 0.91391 0.90487 0.89442 0.90700 0.82770 0.83200 0.82993 0.83864 0.91947 0.91092 0.92956 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.01 0.34 5.45 84.66 0.46 0.80 16 3 Si 0.95 45.17 24.37 68.60 1.67 46.85 16 4 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -10.64 6.53 99.48 0.65 -9.99 16 7 C -0.52 -29.86 9.14 25.60 0.23 -29.62 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C 0.01 0.59 1.69 -11.54 -0.02 0.57 16 10 C -0.10 -3.68 5.14 30.59 0.16 -3.53 16 11 C -0.09 -2.84 5.53 30.59 0.17 -2.67 16 12 C 0.10 2.69 2.47 44.92 0.11 2.80 16 13 N -0.68 -14.33 6.20 -491.55 -3.05 -17.37 16 14 C 0.06 0.92 5.87 86.31 0.51 1.43 16 15 C 0.06 0.81 5.02 71.98 0.36 1.17 16 16 O -0.31 -5.89 10.08 -92.69 -0.93 -6.82 16 17 C 0.13 2.19 6.69 22.50 0.15 2.34 16 18 C -0.20 -2.74 9.04 22.36 0.20 -2.54 16 19 C -0.07 -0.97 9.82 22.28 0.22 -0.75 16 20 C -0.09 -1.34 6.32 22.33 0.14 -1.20 16 21 Cl -0.08 -1.09 28.95 -2.72 -0.08 -1.17 16 22 C -0.07 -1.05 9.82 22.28 0.22 -0.83 16 23 C -0.15 -2.52 9.99 22.36 0.22 -2.30 16 24 C -0.14 -4.03 5.17 30.59 0.16 -3.87 16 25 C -0.11 -4.52 4.68 30.59 0.14 -4.38 16 26 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 27 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 2.00 7.80 -2.39 -0.02 1.98 16 33 H 0.34 6.55 8.47 -89.69 -0.76 5.79 16 34 H 0.07 0.94 7.44 -2.39 -0.02 0.92 16 35 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 36 H 0.09 0.80 7.65 -2.39 -0.02 0.78 16 37 H 0.07 0.81 7.67 -2.39 -0.02 0.80 16 38 H 0.15 1.39 6.30 -2.91 -0.02 1.37 16 39 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 43 H 0.07 1.72 7.45 -2.39 -0.02 1.70 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.03 1.30 3.28 -2.39 -0.01 1.29 16 Total: -1.00 -67.77 366.53 1.49 -66.27 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.15 Total: 14.98 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 3.44 Total: -42.58 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -2.75 Total: -77.53 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.93 Total: -6.82 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.85 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -67.77 1.49 -66.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.540 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds