Wall clock time and date at job start Tue Mar 31 2020 14:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99419 * 2 1 4 4 H 1.48493 * 109.46876 * 269.99449 * 3 2 1 5 5 H 1.48492 * 109.47445 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.46743 * 149.99868 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47404 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47267 * 299.99794 * 11 10 9 13 13 N 1.46901 * 109.47187 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 154.99992 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47622 * 65.00060 * 15 14 13 17 17 C 1.35895 * 117.00412 * 180.02562 * 16 15 14 18 18 C 1.38765 * 120.04659 * 359.72194 * 17 16 15 19 19 C 1.38130 * 119.96510 * 179.74614 * 18 17 16 20 20 C 1.38265 * 120.07077 * 0.55746 * 19 18 17 21 21 C 1.38367 * 120.10005 * 359.69469 * 20 19 18 22 22 Cl 1.73594 * 119.98800 * 180.02562 * 21 20 19 23 23 C 1.38283 * 120.02332 * 0.02873 * 21 20 19 24 24 C 1.53003 * 109.46931 * 60.00150 * 12 11 10 25 25 C 1.52996 * 109.47260 * 299.99693 * 24 12 11 26 26 H 0.96993 * 120.00532 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47233 * 59.99911 * 9 7 2 28 28 H 1.09000 * 109.46837 * 59.99938 * 10 9 7 29 29 H 1.08998 * 109.46944 * 299.99770 * 10 9 7 30 30 H 1.08995 * 109.47174 * 180.02562 * 11 10 9 31 31 H 1.08996 * 109.47449 * 59.99724 * 11 10 9 32 32 H 1.09000 * 109.47284 * 300.00517 * 12 11 10 33 33 H 1.00901 * 111.00067 * 278.95167 * 13 12 11 34 34 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 35 35 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 36 36 H 1.09008 * 109.47448 * 185.00277 * 15 14 13 37 37 H 1.09008 * 109.47260 * 304.99930 * 15 14 13 38 38 H 1.07995 * 120.01573 * 0.02562 * 18 17 16 39 39 H 1.08004 * 119.96649 * 180.25163 * 19 18 17 40 40 H 1.08005 * 119.94911 * 179.72315 * 20 19 18 41 41 H 1.07998 * 120.03314 * 180.02562 * 23 21 20 42 42 H 1.08996 * 109.47234 * 60.00407 * 24 12 11 43 43 H 1.09007 * 109.47106 * 180.02562 * 24 12 11 44 44 H 1.08996 * 109.47580 * 300.00502 * 25 24 12 45 45 H 1.08995 * 109.47412 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0027 11 6 1.4807 -4.9870 0.0033 12 6 0.6007 -5.0674 1.2523 13 7 -0.1343 -6.3394 1.2525 14 6 -0.5015 -6.7350 2.6188 15 6 -1.2630 -8.0613 2.5784 16 8 -0.3959 -9.0943 2.1059 17 6 -0.9206 -10.3441 2.0091 18 6 -2.2417 -10.5727 2.3671 19 6 -2.7749 -11.8426 2.2631 20 6 -1.9904 -12.8887 1.8134 21 6 -0.6713 -12.6650 1.4606 22 17 0.3108 -13.9803 0.8959 23 6 -0.1350 -11.3941 1.5578 24 6 -0.3937 -3.9045 1.2512 25 6 0.3712 -2.5795 1.2508 26 1 -0.4850 0.8399 -0.0004 27 1 0.6243 -2.5575 -0.8880 28 1 2.8722 -3.6034 0.8927 29 1 2.8722 -3.6050 -0.8873 30 1 2.1890 -5.8154 0.0045 31 1 0.8543 -5.0454 -0.8868 32 1 1.2270 -5.0090 2.1424 33 1 -0.9493 -6.2862 0.6600 34 1 0.4014 -6.8528 3.2179 35 1 -1.1339 -5.9659 3.0621 36 1 -1.6125 -8.3104 3.5804 37 1 -2.1176 -7.9695 1.9079 38 1 -2.8539 -9.7571 2.7227 39 1 -3.8042 -12.0197 2.5379 40 1 -2.4081 -13.8818 1.7371 41 1 0.8944 -11.2193 1.2821 42 1 -1.0201 -3.9629 0.3612 43 1 -1.0204 -3.9615 2.1413 44 1 0.9976 -2.5211 2.1409 45 1 -0.3371 -1.7511 1.2496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173326336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:03 Heat of formation + Delta-G solvation = -56.939574 kcal Electronic energy + Delta-G solvation = -24099.160669 eV Core-core repulsion = 20526.880404 eV Total energy + Delta-G solvation = -3572.280265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12920 -39.78681 -38.69358 -37.29360 -36.34842 -34.31622 -32.15441 -31.48061 -31.27463 -30.50357 -28.62902 -26.06620 -24.28074 -23.58169 -23.18812 -22.32865 -22.14496 -20.46234 -19.41077 -18.38629 -17.37787 -17.05723 -16.96873 -16.67415 -16.22071 -16.04403 -15.57907 -15.10436 -14.92906 -14.68587 -14.49811 -14.35290 -14.25501 -14.03593 -13.87657 -13.27870 -13.09001 -12.90261 -12.78607 -12.77066 -12.51653 -12.50026 -12.23155 -12.11908 -12.00265 -11.78176 -11.74316 -11.66988 -11.65159 -11.17469 -10.77653 -10.56499 -10.36770 -9.86396 -9.23867 -9.19808 -8.06840 -6.20713 0.12514 0.36742 1.04720 1.39976 1.40912 1.50853 2.30600 2.43431 2.64828 3.17146 3.20581 3.77853 3.92647 3.98507 4.06937 4.12860 4.16819 4.17968 4.28766 4.39249 4.45765 4.49351 4.56828 4.63768 4.71195 4.78997 4.82516 4.85911 4.91372 5.00390 5.12626 5.17544 5.25031 5.29342 5.34339 5.36676 5.40988 5.48220 5.60524 5.62254 5.69710 6.05393 6.12987 6.22478 6.42035 6.44386 6.55075 6.92018 7.47022 8.96457 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031959 B = 0.001883 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.914684 B =14867.886405 C =15495.300780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.102 4.102 11 C -0.093 4.093 12 C 0.104 3.896 13 N -0.683 5.683 14 C 0.057 3.943 15 C 0.064 3.936 16 O -0.315 6.315 17 C 0.133 3.867 18 C -0.210 4.210 19 C -0.063 4.063 20 C -0.157 4.157 21 C -0.006 4.006 22 Cl -0.068 7.068 23 C -0.168 4.168 24 C -0.131 4.131 25 C -0.098 4.098 26 H 0.259 0.741 27 H -0.009 1.009 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.342 0.658 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.131 0.869 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 -25.772 7.396 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.140 4.140 11 C -0.131 4.131 12 C -0.006 4.006 13 N -0.314 5.314 14 C -0.072 4.072 15 C -0.011 4.011 16 O -0.228 6.228 17 C 0.087 3.913 18 C -0.228 4.228 19 C -0.081 4.081 20 C -0.176 4.176 21 C -0.032 4.032 22 Cl -0.039 7.039 23 C -0.187 4.187 24 C -0.170 4.170 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.149 0.851 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.162 -26.098 7.305 28.032 hybrid contribution -0.196 1.905 -0.085 1.917 sum -7.358 -24.193 7.220 26.298 Atomic orbital electron populations 1.70010 1.07032 1.26922 1.51632 1.25729 0.95707 1.02256 0.95032 0.85672 0.78808 0.79723 0.78150 1.20311 1.20847 1.19414 1.21652 0.92989 0.92520 1.50103 0.93292 1.18632 0.93089 0.92202 0.93412 1.21503 0.97954 0.94675 0.99887 1.21377 0.98087 0.96351 0.97248 1.21385 0.94483 0.86392 0.98349 1.60613 1.28978 1.31130 1.10638 1.22083 1.00405 0.93862 0.90882 1.23042 0.92618 0.85164 1.00248 1.86203 1.40780 1.14718 1.81097 1.19026 0.92466 0.84890 0.94961 1.21675 0.94345 1.00142 1.06667 1.21284 1.00894 0.90782 0.95111 1.21247 0.91702 1.01658 1.03002 1.20712 0.92934 0.88430 1.01164 1.98375 1.70709 1.47124 1.87683 1.20301 1.01417 0.90306 1.06715 1.22155 0.98194 0.96307 1.00368 1.21338 0.98694 0.96105 0.97591 0.93165 0.99103 0.93499 0.93816 0.91601 0.93218 0.91195 0.83973 0.90534 0.91600 0.89173 0.90702 0.82942 0.81743 0.83104 0.85055 0.93384 0.92366 0.95533 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 11.32 21.44 0.24 -52.85 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -29.89 8.56 25.60 0.22 -29.67 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.05 2.27 2.10 -11.54 -0.02 2.24 16 10 C -0.10 -4.26 5.14 30.59 0.16 -4.11 16 11 C -0.09 -3.22 5.53 30.59 0.17 -3.05 16 12 C 0.10 3.25 2.47 44.92 0.11 3.36 16 13 N -0.68 -17.46 6.20 -491.56 -3.05 -20.51 16 14 C 0.06 1.14 5.87 86.30 0.51 1.64 16 15 C 0.06 1.03 5.02 71.98 0.36 1.39 16 16 O -0.31 -6.95 10.08 -92.37 -0.93 -7.88 16 17 C 0.13 2.64 6.69 22.50 0.15 2.79 16 18 C -0.21 -3.01 9.04 22.37 0.20 -2.81 16 19 C -0.06 -0.73 10.04 22.25 0.22 -0.51 16 20 C -0.16 -2.18 9.83 22.31 0.22 -1.96 16 21 C -0.01 -0.10 6.32 22.31 0.14 0.04 16 22 Cl -0.07 -1.17 28.95 -2.72 -0.08 -1.25 16 23 C -0.17 -3.48 9.77 22.39 0.22 -3.26 16 24 C -0.13 -4.67 5.17 30.59 0.16 -4.51 16 25 C -0.10 -4.58 4.98 30.60 0.15 -4.42 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.24 7.80 -2.39 -0.02 2.22 16 33 H 0.34 8.25 8.47 -89.69 -0.76 7.49 16 34 H 0.08 1.65 8.06 -2.39 -0.02 1.63 16 35 H 0.07 1.19 7.44 -2.39 -0.02 1.17 16 36 H 0.09 1.02 7.65 -2.38 -0.02 1.00 16 37 H 0.07 1.03 7.67 -2.38 -0.02 1.01 16 38 H 0.15 1.50 6.30 -2.91 -0.02 1.48 16 39 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 43 H 0.06 1.83 7.45 -2.38 -0.02 1.81 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 Total: -1.00 -63.39 373.35 1.85 -61.55 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.22 Total: 16.66 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.41 Total: -41.76 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -2.80 Total: -73.36 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.93 Total: -7.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -63.39 1.85 -61.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173326336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.609 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds