Wall clock time and date at job start Tue Mar 31 2020 14:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47235 * 269.99967 * 3 2 1 5 5 H 1.48494 * 109.47392 * 30.00469 * 3 2 1 6 6 H 1.48501 * 109.46765 * 150.00426 * 3 2 1 7 7 C 1.37881 * 119.99518 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47221 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47173 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.46815 * 60.00195 * 11 10 9 13 13 N 1.46905 * 109.47335 * 60.00003 * 12 11 10 14 14 C 1.46902 * 110.99800 * 154.99933 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.47046 * 304.99696 * 15 14 13 17 17 O 1.42903 * 109.47256 * 65.00075 * 15 14 13 18 18 C 1.50699 * 109.46610 * 184.99960 * 15 14 13 19 19 C 1.38264 * 119.99325 * 279.71779 * 18 15 14 20 20 C 1.38225 * 120.02851 * 179.76954 * 19 18 15 21 21 C 1.38234 * 120.00948 * 0.51390 * 20 19 18 22 22 C 1.38335 * 119.98710 * 359.74405 * 21 20 19 23 23 Cl 1.73599 * 120.01228 * 180.02562 * 22 21 20 24 24 C 1.38188 * 119.99701 * 100.00132 * 18 15 14 25 25 C 1.52997 * 109.47422 * 299.99673 * 12 11 10 26 26 C 1.52999 * 109.47276 * 59.99910 * 9 7 2 27 27 H 0.97008 * 119.99569 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47070 * 300.00310 * 9 7 2 29 29 H 1.09006 * 109.47269 * 60.00100 * 10 9 7 30 30 H 1.09001 * 109.47232 * 300.00064 * 10 9 7 31 31 H 1.09001 * 109.47213 * 300.00222 * 11 10 9 32 32 H 1.08999 * 109.46801 * 180.02562 * 11 10 9 33 33 H 1.09006 * 109.47344 * 179.97438 * 12 11 10 34 34 H 1.00904 * 110.99696 * 31.04361 * 13 12 11 35 35 H 1.08993 * 109.47737 * 60.00169 * 14 13 12 36 36 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 37 37 H 0.96698 * 113.99763 * 59.99838 * 17 15 14 38 38 H 1.08001 * 119.98797 * 0.02562 * 19 18 15 39 39 H 1.07991 * 119.99483 * 180.25807 * 20 19 18 40 40 H 1.07998 * 120.01023 * 179.71831 * 21 20 19 41 41 H 1.08005 * 120.00306 * 0.02562 * 24 18 15 42 42 H 1.08997 * 109.47712 * 179.97438 * 25 12 11 43 43 H 1.09001 * 109.47216 * 300.00347 * 25 12 11 44 44 H 1.08996 * 109.47621 * 300.00375 * 26 9 7 45 45 H 1.09001 * 109.46745 * 60.00201 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 0.6000 -5.0684 -1.2488 13 7 1.4442 -4.9910 -2.4486 14 6 0.7890 -5.6337 -3.5956 15 6 1.6968 -5.5336 -4.8232 16 1 1.9558 -4.4897 -4.9994 17 8 2.8889 -6.2886 -4.5970 18 6 0.9756 -6.0824 -6.0272 19 6 0.9145 -7.4483 -6.2332 20 6 0.2491 -7.9527 -7.3348 21 6 -0.3467 -7.0912 -8.2368 22 6 -0.2814 -5.7243 -8.0341 23 17 -1.0300 -4.6419 -9.1662 24 6 0.3803 -5.2203 -6.9283 25 6 -0.3942 -3.9055 -1.2489 26 6 0.3708 -2.5799 -1.2494 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5570 0.8897 29 1 2.8718 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8536 -5.0446 0.8903 32 1 2.1883 -5.8156 0.0006 33 1 0.0553 -6.0126 -1.2487 34 1 2.3529 -5.3952 -2.2780 35 1 -0.1570 -5.1330 -3.8011 36 1 0.6026 -6.6829 -3.3666 37 1 2.7337 -7.2288 -4.4327 38 1 1.3835 -8.1216 -5.5309 39 1 0.1982 -9.0197 -7.4929 40 1 -0.8627 -7.4851 -9.0999 41 1 0.4323 -4.1532 -6.7700 42 1 -1.0208 -3.9632 -2.1388 43 1 -1.0206 -3.9630 -0.3587 44 1 -0.3374 -1.7514 -1.2491 45 1 0.9972 -2.5220 -2.1396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:11 Heat of formation + Delta-G solvation = -69.757758 kcal Electronic energy + Delta-G solvation = -25048.061720 eV Core-core repulsion = 21475.225617 eV Total energy + Delta-G solvation = -3572.836103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84623 -39.76632 -38.24259 -37.26696 -35.71308 -33.95407 -32.69934 -31.64340 -31.30180 -30.64029 -27.99902 -26.28582 -24.16539 -23.70296 -23.10588 -22.21603 -21.99059 -19.72856 -18.67546 -18.33253 -17.35271 -17.10699 -16.68100 -16.52316 -16.15738 -15.87285 -15.55839 -15.21382 -14.76186 -14.67200 -14.57293 -14.34169 -14.12987 -13.87133 -13.22529 -13.21801 -12.99962 -12.92586 -12.75534 -12.59350 -12.50278 -12.42624 -12.38502 -12.17403 -11.86800 -11.84837 -11.76872 -11.56053 -11.16882 -10.98556 -10.65451 -10.36446 -10.23622 -9.92419 -9.68984 -9.09982 -8.01032 -6.14061 0.12725 0.23633 1.12189 1.40894 1.41847 1.51532 2.46715 2.56927 3.15187 3.24687 3.50699 3.77123 3.84064 3.98812 4.05441 4.10187 4.18791 4.24926 4.27633 4.35903 4.44939 4.60997 4.71716 4.75932 4.84279 4.88272 4.93418 4.96193 4.98458 5.05544 5.17546 5.22421 5.23563 5.32777 5.37737 5.47123 5.54318 5.66991 5.72604 5.80334 5.87020 6.20337 6.26507 6.34633 6.53764 6.68000 6.80832 7.00098 7.52743 9.01941 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.002953 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.093279 B = 9478.188972 C =10708.783212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.049 3.951 10 C -0.094 4.094 11 C -0.111 4.111 12 C 0.105 3.895 13 N -0.683 5.683 14 C 0.044 3.956 15 C 0.160 3.840 16 H 0.095 0.905 17 O -0.559 6.559 18 C -0.106 4.106 19 C -0.107 4.107 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.046 4.046 23 Cl -0.078 7.078 24 C -0.117 4.117 25 C -0.101 4.101 26 C -0.083 4.083 27 H 0.257 0.743 28 H -0.017 1.017 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.386 0.614 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.150 0.850 41 H 0.126 0.874 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 -21.006 -15.394 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.567 4.567 8 H 0.064 0.936 9 C 0.030 3.970 10 C -0.131 4.131 11 C -0.149 4.149 12 C -0.005 4.005 13 N -0.317 5.317 14 C -0.086 4.086 15 C 0.101 3.899 16 H 0.112 0.888 17 O -0.366 6.366 18 C -0.107 4.107 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.135 4.135 22 C -0.073 4.073 23 Cl -0.050 7.050 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.122 4.122 27 H 0.066 0.934 28 H 0.001 0.999 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.169 0.831 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.236 0.764 38 H 0.172 0.828 39 H 0.182 0.818 40 H 0.167 0.833 41 H 0.144 0.856 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.726 -19.581 -15.731 25.128 hybrid contribution -0.196 0.417 0.286 0.542 sum -0.922 -19.164 -15.446 24.631 Atomic orbital electron populations 1.70051 1.07046 1.26614 1.52016 1.25711 0.95636 1.02144 0.95276 0.85720 0.78846 0.79986 0.78079 1.20393 1.20997 1.19374 1.21655 0.92807 0.92706 1.49523 0.93571 1.18581 0.93082 0.92185 0.93116 1.21365 0.97774 0.94418 0.99565 1.21679 0.98579 0.97592 0.97046 1.21334 0.93594 0.96119 0.89408 1.60211 1.06007 1.61129 1.04333 1.22570 0.97550 0.97627 0.90845 1.20631 0.84057 0.95702 0.89549 0.88753 1.86682 1.30965 1.25325 1.93632 1.20492 0.98859 0.94686 0.96660 1.21332 0.98520 0.93984 0.98655 1.21466 0.95899 1.01331 0.93110 1.21386 1.00360 0.90491 1.01226 1.21074 1.00929 0.91895 0.93399 1.98375 1.81021 1.64944 1.60614 1.21017 0.98256 1.00784 0.93572 1.21524 0.96960 0.96211 0.99222 1.21146 0.98159 0.94954 0.97903 0.93419 0.99896 0.94728 0.92731 0.92330 0.90501 0.92938 0.83140 0.91526 0.93031 0.76447 0.82804 0.81768 0.83273 0.85642 0.93568 0.93909 0.94116 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 11.32 21.45 0.24 -54.84 16 2 C 0.01 0.59 5.30 84.66 0.45 1.04 16 3 Si 0.95 45.48 29.54 68.60 2.03 47.51 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.53 -30.39 8.56 25.60 0.22 -30.17 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.05 2.51 2.10 -11.54 -0.02 2.48 16 10 C -0.09 -3.86 4.98 30.59 0.15 -3.70 16 11 C -0.11 -3.53 5.30 30.59 0.16 -3.37 16 12 C 0.10 3.18 2.82 44.91 0.13 3.30 16 13 N -0.68 -19.18 4.83 -491.56 -2.37 -21.56 16 14 C 0.04 0.97 5.14 86.31 0.44 1.41 16 15 C 0.16 3.37 3.45 29.85 0.10 3.47 16 16 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 17 O -0.56 -10.71 12.71 -148.98 -1.89 -12.60 16 18 C -0.11 -1.96 4.97 -19.87 -0.10 -2.06 16 19 C -0.11 -1.39 9.32 22.27 0.21 -1.18 16 20 C -0.10 -1.14 10.05 22.27 0.22 -0.92 16 21 C -0.12 -1.70 9.83 22.29 0.22 -1.48 16 22 C -0.05 -0.90 6.32 22.32 0.14 -0.76 16 23 Cl -0.08 -1.56 28.96 -2.72 -0.08 -1.64 16 24 C -0.12 -2.49 9.45 22.29 0.21 -2.28 16 25 C -0.10 -3.87 5.53 30.61 0.17 -3.70 16 26 C -0.08 -4.08 4.83 30.61 0.15 -3.93 16 27 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 28 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.05 2.27 7.48 -2.39 -0.02 2.25 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 33 H 0.05 1.35 7.80 -2.38 -0.02 1.33 16 34 H 0.35 9.12 7.75 -89.69 -0.69 8.43 16 35 H 0.07 1.70 7.43 -2.39 -0.02 1.68 16 36 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 37 H 0.39 3.98 7.50 -74.06 -0.56 3.42 16 38 H 0.15 1.05 6.78 -2.91 -0.02 1.03 16 39 H 0.16 0.81 8.06 -2.92 -0.02 0.78 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.13 2.83 8.04 -2.91 -0.02 2.81 16 42 H 0.05 1.67 7.45 -2.39 -0.02 1.65 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.04 2.30 6.07 -2.39 -0.01 2.28 16 45 H 0.03 1.77 7.61 -2.39 -0.02 1.75 16 Total: -1.00 -67.60 369.44 0.52 -67.08 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.25 Total: 17.89 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 2.85 Total: -41.84 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.13 Total: -76.39 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.89 Total: -12.60 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -67.60 0.52 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.676 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds