Wall clock time and date at job start Tue Mar 31 2020 14:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47342 * 240.00319 * 3 2 1 5 5 H 1.48497 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47077 * 120.00240 * 3 2 1 7 7 C 1.37884 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99486 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47330 * 299.99850 * 9 7 2 11 11 C 1.53002 * 109.47208 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47036 * 60.00304 * 11 10 9 13 13 N 1.46903 * 109.46806 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99525 * 206.78539 * 13 12 11 15 15 H 1.08995 * 109.47456 * 324.72798 * 14 13 12 16 16 C 1.53001 * 109.46722 * 84.72488 * 14 13 12 17 17 O 1.42900 * 109.47262 * 64.14975 * 16 14 13 18 18 C 1.50698 * 109.46959 * 204.71954 * 14 13 12 19 19 C 1.38261 * 119.99801 * 319.73150 * 18 14 13 20 20 C 1.38213 * 120.02673 * 179.76433 * 19 18 14 21 21 C 1.38241 * 120.01249 * 0.51091 * 20 19 18 22 22 C 1.38327 * 119.98776 * 359.74272 * 21 20 19 23 23 Cl 1.73595 * 120.01402 * 180.02562 * 22 21 20 24 24 C 1.38203 * 119.98651 * 140.00358 * 18 14 13 25 25 C 1.52999 * 109.46874 * 299.99901 * 12 11 10 26 26 C 1.53001 * 109.46751 * 180.02562 * 9 7 2 27 27 H 0.96994 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47640 * 60.00177 * 9 7 2 29 29 H 1.08993 * 109.47207 * 300.00455 * 10 9 7 30 30 H 1.09000 * 109.46895 * 60.00179 * 10 9 7 31 31 H 1.08998 * 109.46882 * 300.00575 * 11 10 9 32 32 H 1.09001 * 109.46953 * 179.97438 * 11 10 9 33 33 H 1.08993 * 109.47223 * 59.99915 * 12 11 10 34 34 H 1.00900 * 110.99878 * 82.84219 * 13 12 11 35 35 H 1.09004 * 109.47321 * 184.14728 * 16 14 13 36 36 H 1.09002 * 109.47318 * 304.15315 * 16 14 13 37 37 H 0.96701 * 114.00249 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.98139 * 359.97438 * 19 18 14 39 39 H 1.07999 * 119.99257 * 180.24999 * 20 19 18 40 40 H 1.08004 * 120.00514 * 179.72266 * 21 20 19 41 41 H 1.07989 * 120.00692 * 0.02562 * 24 18 14 42 42 H 1.09006 * 109.47488 * 299.99864 * 25 12 11 43 43 H 1.09001 * 109.47415 * 180.02562 * 25 12 11 44 44 H 1.09001 * 109.46968 * 299.99621 * 26 9 7 45 45 H 1.08993 * 109.47223 * 59.99890 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3719 -2.5805 1.2490 11 6 -0.3927 -3.9057 1.2493 12 6 0.6019 -5.0684 1.2490 13 7 -0.1323 -6.3408 1.2487 14 6 0.6651 -7.4087 1.8665 15 1 1.7178 -7.2621 1.6252 16 6 0.4798 -7.3702 3.3847 17 8 -0.8825 -7.6582 3.7058 18 6 0.2099 -8.7448 1.3387 19 6 -1.1375 -8.9914 1.1512 20 6 -1.5553 -10.2149 0.6626 21 6 -0.6268 -11.1966 0.3709 22 6 0.7211 -10.9524 0.5632 23 17 1.8878 -12.1845 0.1965 24 6 1.1392 -9.7254 1.0474 25 6 1.4810 -4.9870 -0.0005 26 6 2.2452 -3.6621 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.9988 -2.5229 2.1387 30 1 -0.3364 -1.7520 1.2495 31 1 -1.0196 -3.9637 0.3595 32 1 -1.0187 -3.9638 2.1398 33 1 1.2288 -5.0104 2.1387 34 1 -0.4147 -6.5950 0.3140 35 1 1.1275 -8.1140 3.8489 36 1 0.7392 -6.3792 3.7574 37 1 -1.0732 -7.6513 4.6539 38 1 -1.8637 -8.2264 1.3836 39 1 -2.6077 -10.4055 0.5126 40 1 -0.9537 -12.1542 -0.0067 41 1 2.1913 -9.5344 1.1984 42 1 0.8541 -5.0450 -0.8904 43 1 2.1893 -5.8155 -0.0011 44 1 2.8718 -3.6044 -0.8906 45 1 2.8719 -3.6044 0.8894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:02 Heat of formation + Delta-G solvation = -51.431506 kcal Electronic energy + Delta-G solvation = -25166.778000 eV Core-core repulsion = 21594.736582 eV Total energy + Delta-G solvation = -3572.041417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94433 -38.28271 -36.97169 -36.46088 -34.77105 -32.71408 -31.28087 -30.71565 -29.73546 -28.69327 -27.16933 -24.41263 -23.29758 -22.78681 -21.61388 -20.71635 -20.23114 -18.86048 -17.53402 -17.14218 -16.30748 -15.91548 -15.64051 -15.17641 -14.87748 -14.51812 -14.10572 -13.87565 -13.71227 -13.45866 -13.31109 -13.12526 -12.86252 -12.67090 -12.16171 -12.02011 -11.82547 -11.56326 -11.52553 -11.28407 -11.21795 -11.00783 -10.85585 -10.66536 -10.50040 -10.38518 -10.18913 -9.93561 -9.80435 -9.36939 -9.09684 -8.92846 -8.78370 -8.71408 -8.26731 -8.04805 -5.95013 -4.01272 1.04315 1.08009 1.93072 3.32670 3.37638 3.40037 3.47293 4.14330 4.32943 4.46099 4.49517 4.66440 4.91095 5.12892 5.20579 5.25679 5.28715 5.34458 5.40543 5.44304 5.54259 5.58266 5.66485 5.73711 5.86640 6.00452 6.06840 6.24978 6.35607 6.36652 6.41838 6.50151 6.63674 6.67426 6.73762 6.77749 6.90492 7.14530 7.26832 7.36118 7.53616 7.62218 7.68802 7.78706 8.05722 8.20846 8.50682 9.02714 9.63095 11.10388 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.002560 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.089584 B =10935.705554 C =11491.075104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.109 4.109 11 C -0.099 4.099 12 C 0.090 3.910 13 N -0.669 5.669 14 C 0.127 3.873 15 H 0.065 0.935 16 C 0.094 3.906 17 O -0.553 6.553 18 C -0.070 4.070 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.040 4.040 23 Cl -0.079 7.079 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.104 4.104 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.370 0.630 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -22.090 4.884 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.148 4.148 11 C -0.137 4.137 12 C -0.019 4.019 13 N -0.300 5.300 14 C 0.017 3.983 15 H 0.083 0.917 16 C 0.015 3.985 17 O -0.357 6.357 18 C -0.070 4.070 19 C -0.088 4.088 20 C -0.133 4.133 21 C -0.132 4.132 22 C -0.066 4.066 23 Cl -0.050 7.050 24 C -0.127 4.127 25 C -0.182 4.182 26 C -0.142 4.142 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.216 0.784 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.852 -21.972 4.775 22.561 hybrid contribution 1.463 0.633 -0.133 1.600 sum -0.389 -21.340 4.641 21.842 Atomic orbital electron populations 1.69865 1.05801 1.26372 1.50826 1.24962 0.94830 0.98921 0.95254 0.86726 0.79653 0.83469 0.78522 1.20396 1.21339 1.20389 1.21200 0.92777 0.90872 1.50392 0.92991 1.18642 0.92557 0.91297 0.94386 1.21622 0.99582 0.95104 0.98460 1.21544 0.97089 0.94472 1.00595 1.21734 0.94296 0.88722 0.97101 1.60797 1.41546 1.01778 1.25838 1.20517 0.96154 0.88002 0.93647 0.91730 1.22125 0.83516 0.98773 0.94114 1.86562 1.26844 1.93980 1.28298 1.19798 0.93554 0.95096 0.98588 1.21259 0.95750 0.96864 0.94939 1.21186 0.99523 0.93310 0.99312 1.21039 0.90968 1.00267 1.00969 1.20801 0.90315 0.90848 1.04645 1.98362 1.59147 1.54150 1.93375 1.20934 1.00196 0.91740 0.99866 1.22242 0.98826 0.98669 0.98461 1.21555 0.98594 0.94134 0.99931 0.93039 0.95810 0.95060 0.88944 0.93034 0.93296 0.91342 0.84057 0.94142 0.93041 0.78394 0.83884 0.85193 0.85353 0.85335 0.92457 0.94177 0.93675 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.51 4.98 -26.73 -0.13 -2.64 16 11 C -0.10 -1.87 5.53 -26.73 -0.15 -2.02 16 12 C 0.09 1.45 2.26 -67.71 -0.15 1.29 16 13 N -0.67 -9.09 5.39 -100.95 -0.54 -9.63 16 14 C 0.13 1.49 2.46 -68.86 -0.17 1.32 16 15 H 0.06 0.76 7.11 -51.93 -0.37 0.39 16 16 C 0.09 1.01 6.76 37.16 0.25 1.26 16 17 O -0.55 -6.03 12.04 -35.23 -0.42 -6.45 16 18 C -0.07 -0.78 4.60 -104.63 -0.48 -1.26 16 19 C -0.07 -0.76 8.03 -39.58 -0.32 -1.08 16 20 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 21 C -0.11 -1.09 9.83 -39.55 -0.39 -1.48 16 22 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 23 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.28 16 24 C -0.11 -1.16 9.45 -39.54 -0.37 -1.53 16 25 C -0.14 -2.39 5.16 -26.75 -0.14 -2.53 16 26 C -0.10 -2.11 5.14 -26.75 -0.14 -2.24 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16 34 H 0.34 4.60 7.72 -39.29 -0.30 4.30 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.59 7.39 -51.93 -0.38 0.20 16 37 H 0.37 2.57 9.12 45.56 0.42 2.98 16 38 H 0.14 1.68 7.46 -52.48 -0.39 1.29 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.13 1.25 8.04 -52.49 -0.42 0.83 16 42 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 43 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -28.83 369.90 -11.00 -39.83 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.30 Total: 6.15 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.42 Total: -24.77 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.08 Total: -34.28 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.42 Total: -6.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.83 -11.00 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.597 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds