Wall clock time and date at job start Tue Mar 31 2020 14:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47342 * 240.00319 * 3 2 1 5 5 H 1.48497 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47077 * 120.00240 * 3 2 1 7 7 C 1.37884 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99486 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47330 * 299.99850 * 9 7 2 11 11 C 1.53002 * 109.47208 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47036 * 60.00304 * 11 10 9 13 13 N 1.46903 * 109.46806 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99525 * 206.78539 * 13 12 11 15 15 H 1.08995 * 109.47456 * 324.72798 * 14 13 12 16 16 C 1.53001 * 109.46722 * 84.72488 * 14 13 12 17 17 O 1.42900 * 109.47262 * 64.14975 * 16 14 13 18 18 C 1.50698 * 109.46959 * 204.71954 * 14 13 12 19 19 C 1.38261 * 119.99801 * 319.73150 * 18 14 13 20 20 C 1.38213 * 120.02673 * 179.76433 * 19 18 14 21 21 C 1.38241 * 120.01249 * 0.51091 * 20 19 18 22 22 C 1.38327 * 119.98776 * 359.74272 * 21 20 19 23 23 Cl 1.73595 * 120.01402 * 180.02562 * 22 21 20 24 24 C 1.38203 * 119.98651 * 140.00358 * 18 14 13 25 25 C 1.52999 * 109.46874 * 299.99901 * 12 11 10 26 26 C 1.53001 * 109.46751 * 180.02562 * 9 7 2 27 27 H 0.96994 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47640 * 60.00177 * 9 7 2 29 29 H 1.08993 * 109.47207 * 300.00455 * 10 9 7 30 30 H 1.09000 * 109.46895 * 60.00179 * 10 9 7 31 31 H 1.08998 * 109.46882 * 300.00575 * 11 10 9 32 32 H 1.09001 * 109.46953 * 179.97438 * 11 10 9 33 33 H 1.08993 * 109.47223 * 59.99915 * 12 11 10 34 34 H 1.00900 * 110.99878 * 82.84219 * 13 12 11 35 35 H 1.09004 * 109.47321 * 184.14728 * 16 14 13 36 36 H 1.09002 * 109.47318 * 304.15315 * 16 14 13 37 37 H 0.96701 * 114.00249 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.98139 * 359.97438 * 19 18 14 39 39 H 1.07999 * 119.99257 * 180.24999 * 20 19 18 40 40 H 1.08004 * 120.00514 * 179.72266 * 21 20 19 41 41 H 1.07989 * 120.00692 * 0.02562 * 24 18 14 42 42 H 1.09006 * 109.47488 * 299.99864 * 25 12 11 43 43 H 1.09001 * 109.47415 * 180.02562 * 25 12 11 44 44 H 1.09001 * 109.46968 * 299.99621 * 26 9 7 45 45 H 1.08993 * 109.47223 * 59.99890 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 0.3719 -2.5805 1.2490 11 6 -0.3927 -3.9057 1.2493 12 6 0.6019 -5.0684 1.2490 13 7 -0.1323 -6.3408 1.2487 14 6 0.6651 -7.4087 1.8665 15 1 1.7178 -7.2621 1.6252 16 6 0.4798 -7.3702 3.3847 17 8 -0.8825 -7.6582 3.7058 18 6 0.2099 -8.7448 1.3387 19 6 -1.1375 -8.9914 1.1512 20 6 -1.5553 -10.2149 0.6626 21 6 -0.6268 -11.1966 0.3709 22 6 0.7211 -10.9524 0.5632 23 17 1.8878 -12.1845 0.1965 24 6 1.1392 -9.7254 1.0474 25 6 1.4810 -4.9870 -0.0005 26 6 2.2452 -3.6621 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.9988 -2.5229 2.1387 30 1 -0.3364 -1.7520 1.2495 31 1 -1.0196 -3.9637 0.3595 32 1 -1.0187 -3.9638 2.1398 33 1 1.2288 -5.0104 2.1387 34 1 -0.4147 -6.5950 0.3140 35 1 1.1275 -8.1140 3.8489 36 1 0.7392 -6.3792 3.7574 37 1 -1.0732 -7.6513 4.6539 38 1 -1.8637 -8.2264 1.3836 39 1 -2.6077 -10.4055 0.5126 40 1 -0.9537 -12.1542 -0.0067 41 1 2.1913 -9.5344 1.1984 42 1 0.8541 -5.0450 -0.8904 43 1 2.1893 -5.8155 -0.0011 44 1 2.8718 -3.6044 -0.8906 45 1 2.8719 -3.6044 0.8894 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:59 Heat of formation + Delta-G solvation = -68.126041 kcal Electronic energy + Delta-G solvation = -25167.501929 eV Core-core repulsion = 21594.736582 eV Total energy + Delta-G solvation = -3572.765347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 6.54 seconds Orbital eigenvalues (eV) -40.82358 -39.57636 -37.96562 -37.24546 -36.04540 -34.38012 -32.48914 -31.60630 -31.34001 -29.93402 -28.40789 -26.13831 -24.27857 -23.59746 -23.19561 -22.11741 -21.25966 -20.49009 -18.40407 -18.34320 -17.99705 -16.86962 -16.64380 -16.45616 -16.04535 -15.82545 -15.21328 -14.92543 -14.74396 -14.68648 -14.51984 -14.25589 -14.16332 -14.09372 -13.72666 -13.41260 -12.90256 -12.82666 -12.76576 -12.55772 -12.42795 -12.33133 -12.22568 -12.07615 -12.03002 -11.82027 -11.59985 -11.55971 -11.17919 -10.78525 -10.68833 -10.60475 -10.33415 -9.85064 -9.56802 -9.22401 -8.05287 -6.19437 0.26275 0.31813 1.16913 1.41615 1.42310 1.50027 2.44443 2.69367 3.13879 3.21344 3.46888 3.71088 3.93811 3.95110 4.08582 4.18811 4.32966 4.38835 4.41264 4.51868 4.53554 4.58443 4.61140 4.71440 4.76486 4.83150 4.89997 4.91905 4.98402 5.03881 5.06511 5.22780 5.25466 5.31335 5.41876 5.47883 5.51013 5.62217 5.65581 5.73758 5.90518 6.06683 6.14747 6.28920 6.43872 6.49215 6.93772 7.06127 7.48397 8.98154 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022574 B = 0.002560 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.089584 B =10935.705554 C =11491.075104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.047 3.953 10 C -0.100 4.100 11 C -0.088 4.088 12 C 0.105 3.895 13 N -0.667 5.667 14 C 0.126 3.874 15 H 0.070 0.930 16 C 0.095 3.905 17 O -0.568 6.568 18 C -0.076 4.076 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.049 4.049 23 Cl -0.076 7.076 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.097 4.097 27 H 0.259 0.741 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.342 0.658 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.387 0.613 38 H 0.133 0.867 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -23.821 5.348 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.005 4.005 13 N -0.297 5.297 14 C 0.016 3.984 15 H 0.087 0.913 16 C 0.016 3.984 17 O -0.375 6.375 18 C -0.076 4.076 19 C -0.097 4.097 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.075 4.075 23 Cl -0.048 7.048 24 C -0.133 4.133 25 C -0.172 4.172 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.008 0.992 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.235 0.765 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.231 -23.721 5.253 24.327 hybrid contribution 1.237 1.133 -0.283 1.701 sum 0.005 -22.588 4.970 23.128 Atomic orbital electron populations 1.70017 1.07092 1.27005 1.51422 1.25730 0.95651 1.02257 0.95010 0.85745 0.78486 0.79461 0.78761 1.19840 1.21025 1.19642 1.21619 0.92952 0.92523 1.50368 0.93239 1.18611 0.93019 0.92167 0.93385 1.21400 0.98745 0.96233 0.97527 1.21358 0.97226 0.93752 1.00264 1.21429 0.93260 0.88884 0.96879 1.60688 1.41519 1.01423 1.26070 1.20583 0.96012 0.87579 0.94181 0.91263 1.22104 0.83887 0.98939 0.93488 1.86519 1.26904 1.93960 1.30070 1.19725 0.93777 0.94907 0.99237 1.21249 0.95526 0.97310 0.95620 1.21421 1.00701 0.92636 0.98406 1.21293 0.90635 1.01018 1.00342 1.20950 0.90837 0.90946 1.04793 1.98363 1.59107 1.53945 1.93347 1.21025 1.00552 0.91806 0.99939 1.22150 0.99011 0.97400 0.98673 1.21416 0.97829 0.94441 0.99878 0.93155 0.99237 0.95486 0.92566 0.94123 0.92774 0.90918 0.83890 0.92406 0.93775 0.76513 0.84897 0.83116 0.83573 0.84576 0.92900 0.91417 0.94033 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 2 C 0.01 0.67 5.30 84.66 0.45 1.12 16 3 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -29.82 8.56 25.60 0.22 -29.60 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.33 2.10 -11.54 -0.02 2.30 16 10 C -0.10 -4.73 4.98 30.59 0.15 -4.58 16 11 C -0.09 -3.33 5.53 30.60 0.17 -3.16 16 12 C 0.11 3.23 2.26 44.91 0.10 3.33 16 13 N -0.67 -17.09 5.39 -473.31 -2.55 -19.64 16 14 C 0.13 2.70 2.46 44.17 0.11 2.81 16 15 H 0.07 1.44 7.11 -2.39 -0.02 1.42 16 16 C 0.09 1.85 6.76 71.98 0.49 2.34 16 17 O -0.57 -11.37 12.04 -148.98 -1.79 -13.16 16 18 C -0.08 -1.55 4.60 -19.87 -0.09 -1.64 16 19 C -0.08 -1.59 8.03 22.27 0.18 -1.41 16 20 C -0.11 -1.91 10.05 22.26 0.22 -1.69 16 21 C -0.11 -1.91 9.83 22.29 0.22 -1.69 16 22 C -0.05 -0.92 6.32 22.32 0.14 -0.78 16 23 Cl -0.08 -1.36 28.96 -2.72 -0.08 -1.44 16 24 C -0.11 -2.21 9.45 22.29 0.21 -2.00 16 25 C -0.13 -4.27 5.16 30.58 0.16 -4.12 16 26 C -0.10 -3.91 5.14 30.58 0.16 -3.76 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.22 7.08 -2.39 -0.02 2.21 16 34 H 0.34 8.74 7.72 -89.69 -0.69 8.05 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.04 0.93 7.39 -2.39 -0.02 0.91 16 37 H 0.39 4.67 9.12 -74.06 -0.68 3.99 16 38 H 0.13 2.96 7.46 -2.91 -0.02 2.93 16 39 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.14 2.35 8.04 -2.92 -0.02 2.33 16 42 H 0.05 1.75 8.13 -2.38 -0.02 1.73 16 43 H 0.07 1.84 7.56 -2.39 -0.02 1.82 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -62.57 369.90 0.33 -62.24 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.37 Total: 21.80 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.86 Total: -42.52 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.31 Total: -72.89 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.79 Total: -13.16 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -62.57 0.33 -62.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.888 kcal (2) G-P(sol) polarization free energy of solvation -62.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.54 seconds