Wall clock time and date at job start Tue Mar 31 2020 14:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47224 * 239.99797 * 3 2 1 5 5 H 1.48497 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47319 * 119.99409 * 3 2 1 7 7 C 1.37875 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47640 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46571 * 300.00038 * 11 10 9 13 13 N 1.46906 * 109.46847 * 179.97438 * 12 11 10 14 14 C 1.46892 * 111.00021 * 153.25803 * 13 12 11 15 15 H 1.08999 * 109.47664 * 34.42107 * 14 13 12 16 16 C 1.53004 * 109.47182 * 274.42408 * 14 13 12 17 17 O 1.42909 * 109.46739 * 295.76119 * 16 14 13 18 18 C 1.50697 * 109.47094 * 154.42394 * 14 13 12 19 19 C 1.38265 * 119.99377 * 219.99752 * 18 14 13 20 20 C 1.38222 * 120.02775 * 180.02562 * 19 18 14 21 21 C 1.38235 * 120.01117 * 359.97438 * 20 19 18 22 22 C 1.38331 * 119.99081 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.01650 * 180.02562 * 22 21 20 24 24 C 1.38197 * 119.99534 * 39.72471 * 18 14 13 25 25 C 1.53001 * 109.47448 * 59.99964 * 12 11 10 26 26 C 1.53000 * 109.46627 * 299.99696 * 25 12 11 27 27 H 0.96998 * 119.99876 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47245 * 59.99531 * 9 7 2 29 29 H 1.09010 * 109.47100 * 300.00327 * 10 9 7 30 30 H 1.09001 * 109.47111 * 59.99568 * 10 9 7 31 31 H 1.09001 * 109.46781 * 59.99399 * 11 10 9 32 32 H 1.08996 * 109.47388 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47046 * 299.99199 * 12 11 10 34 34 H 1.00900 * 110.99366 * 277.21254 * 13 12 11 35 35 H 1.09004 * 109.47104 * 55.75845 * 16 14 13 36 36 H 1.08995 * 109.47314 * 175.76340 * 16 14 13 37 37 H 0.96702 * 113.99466 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.98601 * 359.97438 * 19 18 14 39 39 H 1.07992 * 119.99516 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.00353 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.00062 * 0.02562 * 24 18 14 42 42 H 1.09000 * 109.47038 * 179.97438 * 25 12 11 43 43 H 1.09005 * 109.46910 * 59.99522 * 25 12 11 44 44 H 1.08992 * 109.47456 * 299.99853 * 26 25 12 45 45 H 1.09009 * 109.46772 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 0.6003 -5.0685 1.2489 13 7 -0.1346 -6.3405 1.2480 14 6 -0.4658 -6.7580 2.6168 15 1 -0.6691 -5.8774 3.2262 16 6 0.7124 -7.5303 3.2137 17 8 0.9160 -8.7355 2.4733 18 6 -1.6852 -7.6432 2.5908 19 6 -2.6523 -7.5165 3.5708 20 6 -3.7707 -8.3284 3.5479 21 6 -3.9231 -9.2672 2.5448 22 6 -2.9559 -9.3945 1.5640 23 17 -3.1470 -10.5727 0.3036 24 6 -1.8393 -8.5775 1.5843 25 6 -0.3939 -3.9056 1.2489 26 6 0.3711 -2.5806 1.2495 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8720 -3.6043 0.8905 31 1 0.8539 -5.0445 -0.8903 32 1 2.1887 -5.8156 -0.0006 33 1 1.2268 -5.0110 2.1390 34 1 -0.9649 -6.2778 0.6781 35 1 1.6119 -6.9166 3.1635 36 1 0.4970 -7.7749 4.2538 37 1 1.6494 -9.2766 2.7966 38 1 -2.5334 -6.7834 4.3549 39 1 -4.5259 -8.2287 4.3133 40 1 -4.7973 -9.9012 2.5268 41 1 -1.0857 -8.6736 0.8166 42 1 -1.0211 -3.9638 2.1385 43 1 -1.0203 -3.9631 0.3586 44 1 0.9974 -2.5231 2.1396 45 1 -0.3373 -1.7520 1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:07 Heat of formation + Delta-G solvation = -51.583263 kcal Electronic energy + Delta-G solvation = -25263.997842 eV Core-core repulsion = 21691.949844 eV Total energy + Delta-G solvation = -3572.047998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -39.91782 -38.24923 -36.92117 -36.41409 -34.76658 -32.71513 -31.10945 -30.85262 -29.66177 -28.72317 -27.16623 -24.40433 -23.34409 -22.67525 -21.57086 -20.74548 -20.22123 -18.85733 -17.54745 -17.08895 -16.30491 -15.89650 -15.65529 -15.11429 -14.82862 -14.56338 -14.11376 -13.79797 -13.70906 -13.39165 -13.30754 -13.02511 -12.88620 -12.64409 -12.23347 -11.99859 -11.70336 -11.58514 -11.41182 -11.30623 -11.22694 -10.99499 -10.82034 -10.70743 -10.44914 -10.32214 -10.13804 -9.96735 -9.89453 -9.37757 -8.99843 -8.97406 -8.81090 -8.66636 -8.31675 -7.99241 -5.95963 -4.02096 1.00978 1.17787 2.04216 3.32166 3.36951 3.39619 3.48703 4.15732 4.33375 4.45468 4.51344 4.72276 4.93532 5.08174 5.16122 5.28869 5.32676 5.40018 5.44008 5.47795 5.49928 5.61881 5.70713 5.84334 5.94047 6.13058 6.15863 6.19837 6.26520 6.33764 6.41974 6.45739 6.65824 6.66762 6.69271 6.84600 6.94096 7.14233 7.22670 7.36389 7.52965 7.61353 7.69124 7.76890 8.05046 8.17491 8.50180 9.02226 9.62415 11.09333 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.002679 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.921828 B =10448.576878 C =10643.012088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.098 4.098 12 C 0.090 3.910 13 N -0.672 5.672 14 C 0.127 3.873 15 H 0.068 0.932 16 C 0.094 3.906 17 O -0.553 6.553 18 C -0.070 4.070 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.041 4.041 23 Cl -0.076 7.076 24 C -0.066 4.066 25 C -0.143 4.143 26 C -0.105 4.105 27 H 0.259 0.741 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.370 0.630 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -19.428 8.238 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.019 4.019 13 N -0.302 5.302 14 C 0.017 3.983 15 H 0.086 0.914 16 C 0.015 3.985 17 O -0.357 6.357 18 C -0.071 4.071 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.067 4.067 23 Cl -0.047 7.047 24 C -0.085 4.085 25 C -0.182 4.182 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.160 0.840 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.215 0.785 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.747 -19.560 7.745 21.808 hybrid contribution 0.118 1.331 0.564 1.450 sum -5.629 -18.229 8.309 20.809 Atomic orbital electron populations 1.69865 1.05837 1.26333 1.51013 1.24967 0.94829 0.98955 0.95275 0.86720 0.79647 0.83420 0.78558 1.20339 1.21384 1.20390 1.21220 0.92844 0.90853 1.50158 0.92893 1.18640 0.92624 0.91547 0.94107 1.21632 0.98606 0.94425 1.00002 1.21461 0.97839 0.97811 0.96541 1.21704 0.94981 0.86032 0.99168 1.60768 1.27996 1.32512 1.08963 1.20525 0.90634 0.94734 0.92405 0.91410 1.22132 0.97137 0.86449 0.92803 1.86584 1.55730 1.34348 1.59017 1.19804 0.95329 0.97053 0.94900 1.21180 0.93838 0.99445 0.98657 1.21003 0.98073 0.95699 0.98412 1.21026 0.98600 0.99534 0.94227 1.20977 0.97659 0.95273 0.92792 1.98364 1.97410 1.57219 1.51739 1.21015 0.95620 0.92900 0.98963 1.22298 0.98078 0.98048 0.99801 1.21547 0.99438 0.94546 0.98790 0.93094 0.95804 0.93418 0.93652 0.92773 0.93021 0.91360 0.83973 0.93116 0.94110 0.78457 0.85651 0.85312 0.85363 0.83534 0.94452 0.92717 0.94999 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.27 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.22 5.14 -26.73 -0.14 -2.36 16 11 C -0.10 -1.72 5.53 -26.73 -0.15 -1.87 16 12 C 0.09 1.45 2.26 -67.71 -0.15 1.30 16 13 N -0.67 -9.33 5.39 -100.95 -0.54 -9.88 16 14 C 0.13 1.53 2.45 -68.87 -0.17 1.36 16 15 H 0.07 0.82 7.11 -51.93 -0.37 0.45 16 16 C 0.09 1.01 6.77 37.16 0.25 1.26 16 17 O -0.55 -6.12 12.08 -35.23 -0.43 -6.54 16 18 C -0.07 -0.81 4.60 -104.63 -0.48 -1.29 16 19 C -0.11 -1.14 9.67 -39.58 -0.38 -1.53 16 20 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 21 C -0.12 -1.14 9.83 -39.55 -0.39 -1.53 16 22 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 23 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.34 16 24 C -0.07 -0.80 7.79 -39.55 -0.31 -1.11 16 25 C -0.14 -2.63 5.16 -26.73 -0.14 -2.76 16 26 C -0.10 -2.38 4.98 -26.73 -0.13 -2.51 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.11 7.15 -51.93 -0.37 0.74 16 34 H 0.34 4.85 7.67 -39.29 -0.30 4.55 16 35 H 0.05 0.57 7.45 -51.93 -0.39 0.18 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.37 2.58 9.12 45.56 0.42 3.00 16 38 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.95 7.48 -52.49 -0.39 1.56 16 42 H 0.04 0.63 7.56 -51.93 -0.39 0.24 16 43 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.34 6.07 -51.92 -0.32 2.03 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -29.00 370.04 -11.01 -40.01 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.30 Total: 6.53 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.42 Total: -24.90 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.08 Total: -34.55 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.43 Total: -6.54 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.00 -11.01 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.576 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds