Wall clock time and date at job start Tue Mar 31 2020 14:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48494 * 109.47224 * 239.99797 * 3 2 1 5 5 H 1.48497 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47319 * 119.99409 * 3 2 1 7 7 C 1.37875 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47640 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46571 * 300.00038 * 11 10 9 13 13 N 1.46906 * 109.46847 * 179.97438 * 12 11 10 14 14 C 1.46892 * 111.00021 * 153.25803 * 13 12 11 15 15 H 1.08999 * 109.47664 * 34.42107 * 14 13 12 16 16 C 1.53004 * 109.47182 * 274.42408 * 14 13 12 17 17 O 1.42909 * 109.46739 * 295.76119 * 16 14 13 18 18 C 1.50697 * 109.47094 * 154.42394 * 14 13 12 19 19 C 1.38265 * 119.99377 * 219.99752 * 18 14 13 20 20 C 1.38222 * 120.02775 * 180.02562 * 19 18 14 21 21 C 1.38235 * 120.01117 * 359.97438 * 20 19 18 22 22 C 1.38331 * 119.99081 * 0.02562 * 21 20 19 23 23 Cl 1.73594 * 120.01650 * 180.02562 * 22 21 20 24 24 C 1.38197 * 119.99534 * 39.72471 * 18 14 13 25 25 C 1.53001 * 109.47448 * 59.99964 * 12 11 10 26 26 C 1.53000 * 109.46627 * 299.99696 * 25 12 11 27 27 H 0.96998 * 119.99876 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47245 * 59.99531 * 9 7 2 29 29 H 1.09010 * 109.47100 * 300.00327 * 10 9 7 30 30 H 1.09001 * 109.47111 * 59.99568 * 10 9 7 31 31 H 1.09001 * 109.46781 * 59.99399 * 11 10 9 32 32 H 1.08996 * 109.47388 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47046 * 299.99199 * 12 11 10 34 34 H 1.00900 * 110.99366 * 277.21254 * 13 12 11 35 35 H 1.09004 * 109.47104 * 55.75845 * 16 14 13 36 36 H 1.08995 * 109.47314 * 175.76340 * 16 14 13 37 37 H 0.96702 * 113.99466 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.98601 * 359.97438 * 19 18 14 39 39 H 1.07992 * 119.99516 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.00353 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.00062 * 0.02562 * 24 18 14 42 42 H 1.09000 * 109.47038 * 179.97438 * 25 12 11 43 43 H 1.09005 * 109.46910 * 59.99522 * 25 12 11 44 44 H 1.08992 * 109.47456 * 299.99853 * 26 25 12 45 45 H 1.09009 * 109.46772 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 0.6003 -5.0685 1.2489 13 7 -0.1346 -6.3405 1.2480 14 6 -0.4658 -6.7580 2.6168 15 1 -0.6691 -5.8774 3.2262 16 6 0.7124 -7.5303 3.2137 17 8 0.9160 -8.7355 2.4733 18 6 -1.6852 -7.6432 2.5908 19 6 -2.6523 -7.5165 3.5708 20 6 -3.7707 -8.3284 3.5479 21 6 -3.9231 -9.2672 2.5448 22 6 -2.9559 -9.3945 1.5640 23 17 -3.1470 -10.5727 0.3036 24 6 -1.8393 -8.5775 1.5843 25 6 -0.3939 -3.9056 1.2489 26 6 0.3711 -2.5806 1.2495 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8720 -3.6043 0.8905 31 1 0.8539 -5.0445 -0.8903 32 1 2.1887 -5.8156 -0.0006 33 1 1.2268 -5.0110 2.1390 34 1 -0.9649 -6.2778 0.6781 35 1 1.6119 -6.9166 3.1635 36 1 0.4970 -7.7749 4.2538 37 1 1.6494 -9.2766 2.7966 38 1 -2.5334 -6.7834 4.3549 39 1 -4.5259 -8.2287 4.3133 40 1 -4.7973 -9.9012 2.5268 41 1 -1.0857 -8.6736 0.8166 42 1 -1.0211 -3.9638 2.1385 43 1 -1.0203 -3.9631 0.3586 44 1 0.9974 -2.5231 2.1396 45 1 -0.3373 -1.7520 1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:05 Heat of formation + Delta-G solvation = -68.510900 kcal Electronic energy + Delta-G solvation = -25264.731880 eV Core-core repulsion = 21691.949844 eV Total energy + Delta-G solvation = -3572.782036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.81630 -39.56550 -37.93833 -37.24201 -36.04459 -34.40584 -32.41276 -31.64360 -31.29727 -29.98468 -28.40178 -26.13827 -24.29431 -23.54855 -23.18850 -22.11925 -21.27166 -20.49011 -18.40089 -18.37178 -17.95612 -16.84543 -16.65104 -16.48236 -16.04081 -15.81263 -15.24301 -14.90046 -14.78086 -14.69453 -14.45379 -14.25267 -14.10047 -13.99794 -13.90041 -13.23168 -12.93147 -12.86667 -12.82014 -12.58243 -12.42705 -12.30660 -12.21895 -12.08669 -11.95665 -11.75843 -11.69351 -11.56978 -11.16932 -10.79598 -10.72223 -10.56156 -10.36281 -9.78261 -9.60781 -9.23056 -8.05803 -6.20053 0.21492 0.38877 1.22102 1.41318 1.42180 1.49753 2.44099 2.69057 3.13556 3.20396 3.47001 3.71062 3.95329 4.00069 4.11420 4.20903 4.33476 4.34206 4.45131 4.50250 4.58279 4.61036 4.65373 4.68346 4.71610 4.81780 4.83752 4.91549 4.98651 5.07496 5.13488 5.26151 5.31804 5.35396 5.40161 5.43622 5.48927 5.57388 5.63382 5.70298 5.89461 6.06211 6.19046 6.23553 6.42246 6.46137 6.92990 7.07043 7.47861 8.97252 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.002679 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.921828 B =10448.576878 C =10643.012088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.100 4.100 11 C -0.090 4.090 12 C 0.105 3.895 13 N -0.668 5.668 14 C 0.124 3.876 15 H 0.071 0.929 16 C 0.096 3.904 17 O -0.570 6.570 18 C -0.079 4.079 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.054 4.054 23 Cl -0.080 7.080 24 C -0.078 4.078 25 C -0.131 4.131 26 C -0.096 4.096 27 H 0.259 0.741 28 H -0.012 1.012 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.339 0.661 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.387 0.613 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.029 0.971 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 -20.412 9.904 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.139 4.139 11 C -0.128 4.128 12 C -0.005 4.005 13 N -0.298 5.298 14 C 0.015 3.985 15 H 0.089 0.911 16 C 0.017 3.983 17 O -0.376 6.376 18 C -0.080 4.080 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.080 4.080 23 Cl -0.051 7.051 24 C -0.097 4.097 25 C -0.170 4.170 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.006 0.994 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.147 0.853 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.854 -20.569 9.417 23.367 hybrid contribution 0.126 1.608 0.043 1.614 sum -5.728 -18.960 9.460 21.950 Atomic orbital electron populations 1.70016 1.07100 1.26960 1.51562 1.25727 0.95656 1.02260 0.95011 0.85739 0.78481 0.79408 0.78794 1.19876 1.21057 1.19569 1.21628 0.93011 0.92485 1.50217 0.93171 1.18616 0.93070 0.92278 0.93275 1.21492 0.97874 0.94535 0.99955 1.21358 0.98001 0.96454 0.97032 1.21448 0.94337 0.86109 0.98577 1.60734 1.28034 1.30496 1.10490 1.20629 0.91717 0.95148 0.91039 0.91124 1.22108 0.96328 0.86285 0.93585 1.86547 1.56818 1.34648 1.59621 1.19791 0.95639 0.97102 0.95460 1.21442 0.93592 0.99833 0.98593 1.21358 0.98224 0.94601 0.98522 1.21313 0.98694 0.99799 0.93759 1.21119 0.98080 0.95452 0.93353 1.98358 1.97408 1.57310 1.52021 1.20887 0.95786 0.93880 0.99112 1.22159 0.98206 0.96621 1.00058 1.21322 0.98631 0.95833 0.97714 0.93205 0.99369 0.93873 0.93235 0.93586 0.91288 0.90710 0.84210 0.93521 0.92189 0.76532 0.83888 0.82435 0.83589 0.85258 0.92708 0.93902 0.95258 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.76 8.56 25.60 0.22 -29.54 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.30 2.10 -11.54 -0.02 2.28 16 10 C -0.10 -4.12 5.14 30.59 0.16 -3.96 16 11 C -0.09 -3.09 5.53 30.60 0.17 -2.92 16 12 C 0.10 3.26 2.26 44.92 0.10 3.36 16 13 N -0.67 -17.73 5.39 -473.31 -2.55 -20.27 16 14 C 0.12 2.76 2.45 44.17 0.11 2.87 16 15 H 0.07 1.54 7.11 -2.39 -0.02 1.52 16 16 C 0.10 1.86 6.77 71.98 0.49 2.35 16 17 O -0.57 -11.63 12.08 -148.98 -1.80 -13.43 16 18 C -0.08 -1.70 4.60 -19.87 -0.09 -1.79 16 19 C -0.12 -2.05 9.67 22.27 0.22 -1.83 16 20 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 21 C -0.12 -2.05 9.83 22.29 0.22 -1.83 16 22 C -0.05 -1.16 6.32 22.32 0.14 -1.01 16 23 Cl -0.08 -1.69 28.96 -2.72 -0.08 -1.77 16 24 C -0.08 -1.82 7.79 22.29 0.17 -1.64 16 25 C -0.13 -4.78 5.16 30.59 0.16 -4.63 16 26 C -0.10 -4.46 4.98 30.60 0.15 -4.31 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 2.28 7.15 -2.39 -0.02 2.26 16 34 H 0.34 9.40 7.67 -89.69 -0.69 8.71 16 35 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.39 4.69 9.12 -74.06 -0.68 4.02 16 38 H 0.14 1.97 8.04 -2.91 -0.02 1.95 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.13 3.43 7.48 -2.91 -0.02 3.41 16 42 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 43 H 0.04 1.65 8.13 -2.38 -0.02 1.63 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 2.93 6.07 -2.38 -0.01 2.91 16 Total: -1.00 -63.33 370.04 0.33 -62.99 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.37 Total: 22.66 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 2.86 Total: -42.97 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -2.31 Total: -73.36 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.80 Total: -13.43 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -63.33 0.33 -62.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.516 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds