Wall clock time and date at job start Tue Mar 31 2020 14:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47424 * 270.00081 * 3 2 1 5 5 H 1.48500 * 109.47130 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46940 * 150.00090 * 3 2 1 7 7 C 1.37873 * 119.99385 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47044 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47799 * 300.00479 * 11 10 9 13 13 N 1.46897 * 109.47356 * 179.97438 * 12 11 10 14 14 C 1.46906 * 111.00008 * 86.44690 * 13 12 11 15 15 H 1.09001 * 109.46824 * 326.66546 * 14 13 12 16 16 C 1.53004 * 109.47030 * 86.66787 * 14 13 12 17 17 O 1.42901 * 109.47214 * 64.28940 * 16 14 13 18 18 C 1.50698 * 109.46911 * 206.67034 * 14 13 12 19 19 C 1.38245 * 119.98802 * 319.72176 * 18 14 13 20 20 C 1.38215 * 120.01042 * 179.73160 * 19 18 14 21 21 C 1.38346 * 119.98754 * 0.54334 * 20 19 18 22 22 Cl 1.73605 * 120.01308 * 179.75145 * 21 20 19 23 23 C 1.38350 * 119.97467 * 359.73367 * 21 20 19 24 24 C 1.38214 * 119.98750 * 359.97438 * 23 21 20 25 25 C 1.53000 * 109.47363 * 59.99837 * 12 11 10 26 26 C 1.52998 * 109.47087 * 299.99777 * 9 7 2 27 27 H 0.97009 * 119.99852 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47392 * 60.00148 * 9 7 2 29 29 H 1.09001 * 109.46610 * 59.99879 * 10 9 7 30 30 H 1.08999 * 109.47244 * 300.00290 * 10 9 7 31 31 H 1.09001 * 109.47104 * 60.00686 * 11 10 9 32 32 H 1.09004 * 109.47025 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47033 * 299.99742 * 12 11 10 34 34 H 1.00905 * 111.00287 * 210.39512 * 13 12 11 35 35 H 1.09003 * 109.46768 * 184.28340 * 16 14 13 36 36 H 1.08993 * 109.47168 * 304.28737 * 16 14 13 37 37 H 0.96694 * 114.00109 * 180.02562 * 17 16 14 38 38 H 1.07996 * 119.99149 * 0.02562 * 19 18 14 39 39 H 1.08003 * 120.00501 * 180.27697 * 20 19 18 40 40 H 1.08004 * 120.00663 * 179.97438 * 23 21 20 41 41 H 1.07998 * 119.99247 * 180.02562 * 24 23 21 42 42 H 1.09001 * 109.47124 * 59.99960 * 25 12 11 43 43 H 1.08998 * 109.47832 * 180.02562 * 25 12 11 44 44 H 1.09007 * 109.47078 * 60.00145 * 26 9 7 45 45 H 1.09001 * 109.47307 * 300.00423 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4991 -0.0017 10 6 2.2450 -3.6622 -0.0027 11 6 1.4800 -4.9871 -0.0033 12 6 0.6006 -5.0689 1.2461 13 7 -0.1344 -6.3408 1.2451 14 6 0.6655 -7.4116 1.8548 15 1 1.7206 -7.2457 1.6371 16 6 0.4507 -7.4092 3.3697 17 8 -0.9127 -7.7254 3.6579 18 6 0.2389 -8.7415 1.2889 19 6 -1.1011 -9.0015 1.0701 20 6 -1.4924 -10.2191 0.5459 21 6 -0.5438 -11.1819 0.2508 22 17 -1.0351 -12.7138 -0.4016 23 6 0.7967 -10.9232 0.4754 24 6 1.1874 -9.7031 0.9939 25 6 -0.3936 -3.9060 1.2471 26 6 0.3708 -2.5810 1.2472 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5563 -0.8920 29 1 2.8717 -3.6052 0.8873 30 1 2.8717 -3.6037 -0.8926 31 1 0.8531 -5.0443 -0.8932 32 1 2.1882 -5.8157 -0.0045 33 1 1.2275 -5.0118 2.1359 34 1 -1.0244 -6.2445 1.7108 35 1 1.1013 -8.1529 3.8300 36 1 0.6871 -6.4228 3.7686 37 1 -1.1216 -7.7415 4.6019 38 1 -1.8418 -8.2514 1.3043 39 1 -2.5389 -10.4205 0.3708 40 1 1.5376 -11.6746 0.2456 41 1 2.2337 -9.5009 1.1689 42 1 -1.0204 -3.9631 0.3572 43 1 -1.0198 -3.9639 2.1374 44 1 -0.3376 -1.7524 1.2475 45 1 0.9971 -2.5238 2.1374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:22 Heat of formation + Delta-G solvation = -53.371695 kcal Electronic energy + Delta-G solvation = -25105.217787 eV Core-core repulsion = 21533.092236 eV Total energy + Delta-G solvation = -3572.125550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88609 -38.30760 -37.10579 -36.46829 -34.73772 -32.65193 -31.23901 -30.93985 -29.72429 -28.62607 -27.07793 -24.32936 -23.42820 -22.81014 -21.72048 -20.69149 -20.14226 -18.75437 -17.74748 -17.13457 -16.31197 -15.77480 -15.61738 -15.25848 -14.88306 -14.69348 -14.36765 -13.74971 -13.64012 -13.54625 -13.41998 -13.11577 -12.79421 -12.47335 -12.44581 -12.05508 -11.62101 -11.54815 -11.37782 -11.30703 -11.18302 -11.01605 -10.88172 -10.70512 -10.56929 -10.40332 -10.20486 -10.13310 -9.76182 -9.37127 -9.08304 -8.89752 -8.66184 -8.62047 -8.29888 -8.16432 -5.95932 -4.01877 1.07422 1.26163 2.01500 3.30838 3.37721 3.40604 3.53010 3.98418 4.37615 4.45838 4.62965 4.71301 4.80346 4.95097 5.18766 5.24009 5.30507 5.32502 5.37082 5.46248 5.50664 5.60823 5.64098 5.89752 5.92511 6.12354 6.15418 6.20581 6.34902 6.36659 6.43871 6.52376 6.61047 6.69885 6.74306 6.82793 6.96695 7.15477 7.24744 7.31976 7.41261 7.54794 7.63560 7.77539 8.05779 8.18015 8.50244 9.02570 9.62623 11.09563 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.002409 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.988213 B =11622.094546 C =11950.120392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.092 3.908 13 N -0.677 5.677 14 C 0.126 3.874 15 H 0.098 0.902 16 C 0.049 3.951 17 O -0.565 6.565 18 C -0.052 4.052 19 C -0.060 4.060 20 C -0.117 4.117 21 C -0.039 4.039 22 Cl -0.083 7.083 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.106 4.106 27 H 0.259 0.741 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.348 0.652 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.378 0.622 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.093 0.907 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -21.464 6.380 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.017 4.017 13 N -0.308 5.308 14 C 0.016 3.984 15 H 0.116 0.884 16 C -0.030 4.030 17 O -0.370 6.370 18 C -0.053 4.053 19 C -0.078 4.078 20 C -0.136 4.136 21 C -0.066 4.066 22 Cl -0.054 7.054 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.154 4.154 26 C -0.145 4.145 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.168 0.832 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.225 0.775 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.386 -21.650 5.025 22.269 hybrid contribution 0.484 1.033 1.526 1.905 sum -0.902 -20.617 6.551 21.651 Atomic orbital electron populations 1.69877 1.05817 1.26232 1.51055 1.24967 0.94834 0.98953 0.95297 0.86663 0.79878 0.83784 0.78064 1.20755 1.21323 1.20049 1.21250 0.92851 0.90848 1.50076 0.92886 1.18647 0.92623 0.91453 0.94241 1.21635 0.98617 0.94547 0.99895 1.21530 0.97493 0.97348 0.97470 1.21628 0.95198 0.87494 0.97362 1.60601 1.06503 1.05448 1.58274 1.20630 0.98723 0.89797 0.89282 0.88385 1.22880 0.83630 0.99245 0.97294 1.86451 1.27090 1.93701 1.29741 1.19778 0.93524 0.94615 0.97362 1.20899 0.96035 0.95359 0.95546 1.21065 0.99148 0.93131 1.00244 1.20896 0.94527 0.87965 1.03191 1.98355 1.91932 1.30167 1.84974 1.20905 0.93946 0.97844 1.00771 1.20961 0.99539 0.92793 0.99399 1.21790 0.97355 0.95939 1.00366 1.21577 0.99540 0.94617 0.98720 0.93124 0.95627 0.93803 0.93427 0.91972 0.94130 0.94541 0.83232 0.93396 0.92985 0.77488 0.84766 0.85336 0.85358 0.85479 0.91995 0.94243 0.88909 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.22 5.14 -26.73 -0.14 -2.36 16 11 C -0.10 -1.74 5.42 -26.74 -0.15 -1.89 16 12 C 0.09 1.46 2.28 -67.72 -0.15 1.31 16 13 N -0.68 -9.18 5.50 -100.95 -0.55 -9.74 16 14 C 0.13 1.44 2.45 -68.86 -0.17 1.27 16 15 H 0.10 1.12 7.08 -51.93 -0.37 0.75 16 16 C 0.05 0.47 6.68 37.16 0.25 0.72 16 17 O -0.56 -5.23 11.43 -35.23 -0.40 -5.63 16 18 C -0.05 -0.59 4.84 -104.62 -0.51 -1.10 16 19 C -0.06 -0.69 8.33 -39.59 -0.33 -1.02 16 20 C -0.12 -1.29 9.83 -39.55 -0.39 -1.68 16 21 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 22 Cl -0.08 -0.84 28.96 -51.86 -1.50 -2.34 16 23 C -0.12 -1.18 9.83 -39.55 -0.39 -1.57 16 24 C -0.11 -1.12 9.67 -39.59 -0.38 -1.50 16 25 C -0.12 -2.14 5.18 -26.75 -0.14 -2.28 16 26 C -0.11 -2.41 4.98 -26.75 -0.13 -2.54 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.63 7.56 -51.93 -0.39 0.24 16 33 H 0.04 0.58 7.23 -51.93 -0.38 0.21 16 34 H 0.35 4.67 6.91 -39.29 -0.27 4.39 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.52 7.53 -51.93 -0.39 0.13 16 37 H 0.38 2.02 9.12 45.56 0.42 2.44 16 38 H 0.13 1.57 7.04 -52.49 -0.37 1.20 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.13 1.07 8.04 -52.49 -0.42 0.64 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 44 H 0.09 2.40 6.07 -51.92 -0.32 2.08 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -28.81 368.86 -11.01 -39.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.26 Total: 5.75 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -3.46 Total: -24.97 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.07 Total: -34.33 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.40 Total: -5.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.81 -11.01 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.553 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds