Wall clock time and date at job start Tue Mar 31 2020 14:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47424 * 270.00081 * 3 2 1 5 5 H 1.48500 * 109.47130 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46940 * 150.00090 * 3 2 1 7 7 C 1.37873 * 119.99385 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47044 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47799 * 300.00479 * 11 10 9 13 13 N 1.46897 * 109.47356 * 179.97438 * 12 11 10 14 14 C 1.46906 * 111.00008 * 86.44690 * 13 12 11 15 15 H 1.09001 * 109.46824 * 326.66546 * 14 13 12 16 16 C 1.53004 * 109.47030 * 86.66787 * 14 13 12 17 17 O 1.42901 * 109.47214 * 64.28940 * 16 14 13 18 18 C 1.50698 * 109.46911 * 206.67034 * 14 13 12 19 19 C 1.38245 * 119.98802 * 319.72176 * 18 14 13 20 20 C 1.38215 * 120.01042 * 179.73160 * 19 18 14 21 21 C 1.38346 * 119.98754 * 0.54334 * 20 19 18 22 22 Cl 1.73605 * 120.01308 * 179.75145 * 21 20 19 23 23 C 1.38350 * 119.97467 * 359.73367 * 21 20 19 24 24 C 1.38214 * 119.98750 * 359.97438 * 23 21 20 25 25 C 1.53000 * 109.47363 * 59.99837 * 12 11 10 26 26 C 1.52998 * 109.47087 * 299.99777 * 9 7 2 27 27 H 0.97009 * 119.99852 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47392 * 60.00148 * 9 7 2 29 29 H 1.09001 * 109.46610 * 59.99879 * 10 9 7 30 30 H 1.08999 * 109.47244 * 300.00290 * 10 9 7 31 31 H 1.09001 * 109.47104 * 60.00686 * 11 10 9 32 32 H 1.09004 * 109.47025 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47033 * 299.99742 * 12 11 10 34 34 H 1.00905 * 111.00287 * 210.39512 * 13 12 11 35 35 H 1.09003 * 109.46768 * 184.28340 * 16 14 13 36 36 H 1.08993 * 109.47168 * 304.28737 * 16 14 13 37 37 H 0.96694 * 114.00109 * 180.02562 * 17 16 14 38 38 H 1.07996 * 119.99149 * 0.02562 * 19 18 14 39 39 H 1.08003 * 120.00501 * 180.27697 * 20 19 18 40 40 H 1.08004 * 120.00663 * 179.97438 * 23 21 20 41 41 H 1.07998 * 119.99247 * 180.02562 * 24 23 21 42 42 H 1.09001 * 109.47124 * 59.99960 * 25 12 11 43 43 H 1.08998 * 109.47832 * 180.02562 * 25 12 11 44 44 H 1.09007 * 109.47078 * 60.00145 * 26 9 7 45 45 H 1.09001 * 109.47307 * 300.00423 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4991 -0.0017 10 6 2.2450 -3.6622 -0.0027 11 6 1.4800 -4.9871 -0.0033 12 6 0.6006 -5.0689 1.2461 13 7 -0.1344 -6.3408 1.2451 14 6 0.6655 -7.4116 1.8548 15 1 1.7206 -7.2457 1.6371 16 6 0.4507 -7.4092 3.3697 17 8 -0.9127 -7.7254 3.6579 18 6 0.2389 -8.7415 1.2889 19 6 -1.1011 -9.0015 1.0701 20 6 -1.4924 -10.2191 0.5459 21 6 -0.5438 -11.1819 0.2508 22 17 -1.0351 -12.7138 -0.4016 23 6 0.7967 -10.9232 0.4754 24 6 1.1874 -9.7031 0.9939 25 6 -0.3936 -3.9060 1.2471 26 6 0.3708 -2.5810 1.2472 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5563 -0.8920 29 1 2.8717 -3.6052 0.8873 30 1 2.8717 -3.6037 -0.8926 31 1 0.8531 -5.0443 -0.8932 32 1 2.1882 -5.8157 -0.0045 33 1 1.2275 -5.0118 2.1359 34 1 -1.0244 -6.2445 1.7108 35 1 1.1013 -8.1529 3.8300 36 1 0.6871 -6.4228 3.7686 37 1 -1.1216 -7.7415 4.6019 38 1 -1.8418 -8.2514 1.3043 39 1 -2.5389 -10.4205 0.3708 40 1 1.5376 -11.6746 0.2456 41 1 2.2337 -9.5009 1.1689 42 1 -1.0204 -3.9631 0.3572 43 1 -1.0198 -3.9639 2.1374 44 1 -0.3376 -1.7524 1.2475 45 1 0.9971 -2.5238 2.1374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:21 Heat of formation + Delta-G solvation = -69.962027 kcal Electronic energy + Delta-G solvation = -25105.937198 eV Core-core repulsion = 21533.092236 eV Total energy + Delta-G solvation = -3572.844961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76884 -39.55331 -38.11383 -37.24205 -35.97770 -34.33918 -32.37934 -31.89526 -31.30462 -29.90943 -28.24514 -26.06499 -24.34148 -23.67845 -23.24192 -22.10433 -21.17537 -20.38696 -18.52276 -18.36297 -17.91946 -16.71669 -16.64403 -16.49367 -16.16354 -15.75906 -15.53306 -15.03022 -14.77141 -14.68714 -14.38828 -14.33139 -14.25416 -13.91531 -13.47999 -13.19663 -13.07743 -12.86780 -12.77475 -12.60925 -12.44280 -12.35103 -12.25418 -12.01899 -11.91729 -11.76864 -11.66814 -11.53991 -11.20448 -10.91654 -10.69269 -10.49419 -10.34166 -9.87766 -9.47436 -9.24187 -8.05271 -6.19177 0.25953 0.46721 1.22028 1.41084 1.42070 1.51759 2.44664 2.70912 3.13466 3.21333 3.54020 3.79521 3.90638 4.02287 4.05658 4.10476 4.19334 4.43949 4.49752 4.50886 4.51840 4.61932 4.66516 4.67857 4.79072 4.85142 4.85789 4.89788 5.01420 5.06093 5.13771 5.23021 5.32404 5.36191 5.41758 5.45601 5.52937 5.64585 5.70544 5.73568 5.94574 6.07644 6.19461 6.27702 6.44401 6.54034 6.90459 6.94283 7.48762 8.98380 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.002409 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.988213 B =11622.094546 C =11950.120392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.106 3.894 13 N -0.678 5.678 14 C 0.125 3.875 15 H 0.103 0.897 16 C 0.055 3.945 17 O -0.578 6.578 18 C -0.061 4.061 19 C -0.071 4.071 20 C -0.125 4.125 21 C -0.050 4.050 22 Cl -0.080 7.080 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.106 4.106 26 C -0.098 4.098 27 H 0.259 0.741 28 H -0.012 1.012 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.349 0.651 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.395 0.605 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -22.896 7.352 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.003 4.003 13 N -0.310 5.310 14 C 0.015 3.985 15 H 0.121 0.879 16 C -0.025 4.025 17 O -0.386 6.386 18 C -0.062 4.062 19 C -0.089 4.089 20 C -0.144 4.144 21 C -0.076 4.076 22 Cl -0.051 7.051 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.144 4.144 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.006 0.994 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.170 0.830 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.245 0.755 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.196 -23.100 6.011 23.870 hybrid contribution 0.081 1.442 1.203 1.880 sum -0.116 -21.657 7.214 22.828 Atomic orbital electron populations 1.70028 1.07110 1.26900 1.51640 1.25734 0.95655 1.02279 0.95066 0.85680 0.78844 0.79757 0.78113 1.20403 1.20957 1.19242 1.21651 0.93001 0.92451 1.50057 0.93142 1.18631 0.93112 0.92315 0.93329 1.21493 0.97846 0.94616 0.99941 1.21423 0.97700 0.96321 0.97575 1.21336 0.94371 0.87673 0.96944 1.60486 1.06646 1.04643 1.59213 1.20702 0.98465 0.88852 0.90523 0.87902 1.22763 0.84156 0.99652 0.95909 1.86417 1.26939 1.93672 1.31535 1.19842 0.93647 0.94872 0.97791 1.20916 0.96264 0.95527 0.96215 1.21195 0.99767 0.93129 1.00297 1.21052 0.94982 0.88169 1.03406 1.98354 1.91960 1.29850 1.84920 1.21163 0.94034 0.98295 1.00176 1.21212 1.00439 0.92430 0.98721 1.21613 0.97497 0.94843 1.00466 1.21349 0.98730 0.95895 0.97684 0.93197 0.99363 0.93196 0.93856 0.93491 0.91492 0.93617 0.83026 0.91724 0.93263 0.75547 0.85362 0.84595 0.83635 0.83350 0.93562 0.92456 0.92476 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 2 C 0.01 0.61 5.30 84.65 0.45 1.06 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -29.53 8.56 25.60 0.22 -29.31 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.04 2.22 2.10 -11.54 -0.02 2.20 16 10 C -0.10 -4.07 5.14 30.59 0.16 -3.91 16 11 C -0.09 -3.07 5.42 30.59 0.17 -2.91 16 12 C 0.11 3.21 2.28 44.91 0.10 3.32 16 13 N -0.68 -17.20 5.50 -473.31 -2.60 -19.80 16 14 C 0.12 2.53 2.45 44.17 0.11 2.64 16 15 H 0.10 2.00 7.08 -2.39 -0.02 1.98 16 16 C 0.05 0.90 6.68 71.98 0.48 1.38 16 17 O -0.58 -9.44 11.43 -148.98 -1.70 -11.14 16 18 C -0.06 -1.25 4.84 -19.86 -0.10 -1.35 16 19 C -0.07 -1.55 8.33 22.27 0.19 -1.36 16 20 C -0.13 -2.60 9.83 22.29 0.22 -2.39 16 21 C -0.05 -1.00 6.32 22.32 0.14 -0.86 16 22 Cl -0.08 -1.49 28.96 -2.72 -0.08 -1.57 16 23 C -0.12 -2.14 9.83 22.29 0.22 -1.92 16 24 C -0.11 -1.97 9.67 22.26 0.22 -1.75 16 25 C -0.11 -3.89 5.18 30.58 0.16 -3.73 16 26 C -0.10 -4.54 4.98 30.58 0.15 -4.38 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.91 7.56 -2.38 -0.02 1.89 16 33 H 0.05 1.34 7.23 -2.39 -0.02 1.32 16 34 H 0.35 8.84 6.91 -89.69 -0.62 8.22 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.85 7.53 -2.39 -0.02 0.83 16 37 H 0.39 3.33 9.12 -74.06 -0.68 2.66 16 38 H 0.13 2.90 7.04 -2.91 -0.02 2.87 16 39 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.15 1.96 8.04 -2.91 -0.02 1.94 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.88 8.12 -2.39 -0.02 1.86 16 44 H 0.06 3.05 6.07 -2.38 -0.01 3.04 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.74 368.86 0.44 -62.30 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.30 Total: 20.80 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.85 Total: -43.27 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.36 Total: -72.91 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.70 Total: -11.14 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -62.74 0.44 -62.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.664 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds