Wall clock time and date at job start Tue Mar 31 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00333 * 2 1 4 4 H 1.48499 * 109.47085 * 274.99311 * 3 2 1 5 5 H 1.48502 * 109.47360 * 34.99328 * 3 2 1 6 6 H 1.48500 * 109.47171 * 154.99165 * 3 2 1 7 7 C 1.37882 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 189.57583 * 7 2 1 9 9 C 1.50695 * 120.00026 * 9.57309 * 7 2 1 10 10 C 1.53006 * 109.46802 * 185.44329 * 9 7 2 11 11 C 1.53001 * 109.46719 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47237 * 60.00215 * 11 10 9 13 13 N 1.46897 * 109.47157 * 59.99662 * 12 11 10 14 14 C 1.46901 * 110.99907 * 154.99713 * 13 12 11 15 15 H 1.09005 * 109.47348 * 35.00244 * 14 13 12 16 16 C 1.53000 * 109.47373 * 275.00359 * 14 13 12 17 17 O 1.42904 * 109.47070 * 294.99563 * 16 14 13 18 18 C 1.50701 * 109.47157 * 155.00198 * 14 13 12 19 19 C 1.38242 * 119.98513 * 39.72870 * 18 14 13 20 20 C 1.38221 * 120.00956 * 179.72959 * 19 18 14 21 21 C 1.38349 * 119.98721 * 0.54545 * 20 19 18 22 22 Cl 1.73596 * 120.01222 * 179.70792 * 21 20 19 23 23 C 1.38354 * 119.97351 * 359.72705 * 21 20 19 24 24 C 1.38213 * 119.98557 * 0.02562 * 23 21 20 25 25 C 1.52997 * 109.47024 * 299.99720 * 12 11 10 26 26 C 1.52998 * 109.47068 * 65.44597 * 9 7 2 27 27 H 0.97009 * 119.99908 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47496 * 305.44231 * 9 7 2 29 29 H 1.08999 * 109.46743 * 60.00347 * 10 9 7 30 30 H 1.09000 * 109.47474 * 299.99896 * 10 9 7 31 31 H 1.09007 * 109.47220 * 299.99829 * 11 10 9 32 32 H 1.09007 * 109.46862 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.46908 * 179.97438 * 12 11 10 34 34 H 1.00905 * 111.00005 * 31.04884 * 13 12 11 35 35 H 1.08999 * 109.47421 * 54.99752 * 16 14 13 36 36 H 1.09000 * 109.47124 * 175.00318 * 16 14 13 37 37 H 0.96704 * 114.00129 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99509 * 0.02562 * 19 18 14 39 39 H 1.07995 * 120.00447 * 180.27210 * 20 19 18 40 40 H 1.08001 * 120.00757 * 179.97438 * 23 21 20 41 41 H 1.08005 * 119.99177 * 180.02562 * 24 23 21 42 42 H 1.09004 * 109.47089 * 180.02562 * 25 12 11 43 43 H 1.09003 * 109.46972 * 299.99642 * 25 12 11 44 44 H 1.08995 * 109.47061 * 299.99570 * 26 9 7 45 45 H 1.09000 * 109.47277 * 60.00062 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3911 2.1072 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4118 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0732 -1.2008 0.1551 9 6 1.2666 -2.4900 -0.2182 10 6 2.2322 -3.6631 -0.0378 11 6 1.4832 -4.9787 -0.2593 12 6 0.9074 -5.0054 -1.6766 13 7 2.0007 -4.8941 -2.6514 14 6 1.6196 -5.4878 -3.9399 15 1 0.5591 -5.3128 -4.1212 16 6 1.8896 -6.9935 -3.9074 17 8 3.2949 -7.2229 -3.7865 18 6 2.4288 -4.8561 -5.0431 19 6 3.7667 -4.5716 -4.8427 20 6 4.5107 -3.9973 -5.8561 21 6 3.9135 -3.6968 -7.0673 22 17 4.8456 -2.9685 -8.3380 23 6 2.5731 -3.9765 -7.2654 24 6 1.8314 -4.5555 -6.2530 25 6 -0.0581 -3.8323 -1.8570 26 6 0.6904 -2.5170 -1.6352 27 1 -0.4850 0.8401 0.0004 28 1 0.4557 -2.5723 0.5054 29 1 2.6426 -3.6438 0.9718 30 1 3.0431 -3.5808 -0.7614 31 1 0.6719 -5.0613 0.4641 32 1 2.1710 -5.8145 -0.1304 33 1 0.3742 -5.9428 -1.8346 34 1 2.8464 -5.3141 -2.2958 35 1 1.3744 -7.4368 -3.0553 36 1 1.5253 -7.4479 -4.8288 37 1 3.5399 -8.1580 -3.7593 38 1 4.2318 -4.8025 -3.8957 39 1 5.5570 -3.7791 -5.7009 40 1 2.1063 -3.7418 -8.2106 41 1 0.7851 -4.7744 -6.4077 42 1 -0.4686 -3.8515 -2.8666 43 1 -0.8693 -3.9149 -1.1337 44 1 0.0026 -1.6813 -1.7637 45 1 1.5014 -2.4347 -2.3589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:25 Heat of formation + Delta-G solvation = -48.822055 kcal Electronic energy + Delta-G solvation = -25821.282234 eV Core-core repulsion = 22249.353971 eV Total energy + Delta-G solvation = -3571.928263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.80511 -38.32530 -37.02356 -36.34164 -34.42465 -32.56221 -31.03312 -30.63735 -29.71978 -28.63993 -27.07344 -24.43465 -23.34285 -22.70610 -21.58562 -20.66994 -20.25586 -18.31374 -17.53067 -17.04319 -16.20259 -15.84220 -15.37891 -15.26897 -14.78699 -14.60594 -14.12741 -14.07366 -13.52997 -13.40126 -13.26792 -12.89873 -12.70957 -12.26536 -12.25962 -12.01525 -11.53264 -11.43396 -11.37226 -11.27422 -11.09087 -10.97999 -10.73945 -10.70320 -10.57423 -10.23016 -10.17449 -10.05555 -9.74044 -9.22595 -8.91718 -8.71310 -8.54447 -8.47203 -8.15120 -7.95741 -5.88540 -3.87868 1.23351 1.42573 2.16560 3.39105 3.46120 3.49253 3.67629 4.05026 4.46086 4.56166 4.70178 4.85526 4.94343 5.01879 5.20487 5.31765 5.38007 5.44409 5.45347 5.48309 5.58246 5.64221 5.72251 5.78781 6.04945 6.17393 6.26804 6.32366 6.36765 6.39973 6.49368 6.54407 6.69019 6.82501 6.87922 6.90304 7.05179 7.29646 7.35339 7.45689 7.56434 7.67270 7.74357 7.91620 8.20956 8.23125 8.63740 9.16422 9.74356 11.20558 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004201 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.727577 B = 6663.493007 C = 8551.245796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.052 0.948 9 C 0.051 3.949 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.095 3.905 13 N -0.659 5.659 14 C 0.127 3.873 15 H 0.098 0.902 16 C 0.049 3.951 17 O -0.563 6.563 18 C -0.050 4.050 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.038 4.038 22 Cl -0.084 7.084 23 C -0.117 4.117 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.091 4.091 27 H 0.257 0.743 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.025 0.975 34 H 0.347 0.653 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.376 0.624 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 -15.957 -12.537 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.033 3.967 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.291 5.291 14 C 0.016 3.984 15 H 0.116 0.884 16 C -0.030 4.030 17 O -0.368 6.368 18 C -0.051 4.051 19 C -0.075 4.075 20 C -0.135 4.135 21 C -0.064 4.064 22 Cl -0.056 7.056 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.167 0.833 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.223 0.777 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.548 -14.466 -12.806 19.643 hybrid contribution 0.416 -0.485 0.011 0.639 sum 3.964 -14.951 -12.795 20.074 Atomic orbital electron populations 1.69975 1.05856 1.26088 1.51012 1.24920 0.94678 0.98762 0.95365 0.86759 0.80114 0.84287 0.77910 1.20817 1.21536 1.20017 1.21211 0.93938 0.91282 1.48209 0.93017 1.18601 0.93675 0.91331 0.93103 1.21529 0.99117 0.93878 0.99363 1.21740 0.99681 0.98983 0.95149 1.21527 0.91941 0.96462 0.91508 1.60489 1.06433 1.60148 1.02015 1.20629 0.98721 0.88802 0.90231 0.88437 1.22911 0.82476 0.97925 0.99733 1.86496 1.22883 1.30320 1.97076 1.19702 0.94276 0.97420 0.93724 1.20876 0.93253 0.95223 0.98142 1.21059 1.00617 1.00055 0.91793 1.20877 0.92663 1.02301 0.90591 1.98349 1.73557 1.82029 1.51643 1.20878 0.92127 1.00554 0.99993 1.20921 0.99656 0.99304 0.92759 1.21607 0.96808 0.97042 0.98925 1.21344 0.98828 0.93312 0.99380 0.93344 0.95792 0.94175 0.92585 0.92120 0.93967 0.95691 0.83288 0.93361 0.93517 0.77712 0.84801 0.85372 0.85463 0.85627 0.94393 0.93052 0.92078 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 12.16 55.43 0.67 -25.40 16 2 C 0.06 1.80 5.20 -17.82 -0.09 1.71 16 3 Si 0.88 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.18 8.48 -34.44 -0.29 -14.47 16 8 H 0.05 1.44 7.77 -52.48 -0.41 1.04 16 9 C 0.05 1.27 1.97 -91.77 -0.18 1.09 16 10 C -0.10 -2.06 4.99 -26.73 -0.13 -2.20 16 11 C -0.12 -1.93 5.30 -26.73 -0.14 -2.07 16 12 C 0.09 1.45 2.62 -67.72 -0.18 1.28 16 13 N -0.66 -9.48 4.02 -100.96 -0.41 -9.89 16 14 C 0.13 1.53 2.46 -68.86 -0.17 1.36 16 15 H 0.10 1.17 6.97 -51.93 -0.36 0.80 16 16 C 0.05 0.46 6.68 37.16 0.25 0.71 16 17 O -0.56 -5.25 11.48 -35.23 -0.40 -5.66 16 18 C -0.05 -0.65 4.83 -104.62 -0.51 -1.15 16 19 C -0.06 -0.76 8.32 -39.59 -0.33 -1.09 16 20 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 16 21 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 22 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.51 16 23 C -0.12 -1.40 9.83 -39.55 -0.39 -1.79 16 24 C -0.11 -1.28 9.67 -39.59 -0.38 -1.66 16 25 C -0.11 -1.95 5.51 -26.76 -0.15 -2.10 16 26 C -0.09 -2.10 4.88 -26.76 -0.13 -2.23 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.15 7.48 -51.93 -0.39 0.76 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.60 8.12 -51.92 -0.42 0.18 16 33 H 0.03 0.34 7.10 -51.93 -0.37 -0.03 16 34 H 0.35 4.91 6.74 -39.29 -0.26 4.64 16 35 H 0.05 0.44 7.37 -51.93 -0.38 0.05 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 1.96 9.12 45.56 0.42 2.37 16 38 H 0.13 1.81 7.01 -52.49 -0.37 1.44 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.22 8.04 -52.48 -0.42 0.80 16 42 H 0.04 0.65 7.43 -51.93 -0.39 0.26 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 45 H 0.05 1.24 7.60 -51.93 -0.39 0.85 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -30.23 367.12 -10.79 -41.02 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.20 Total: 5.27 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.46 Total: -25.24 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.27 Total: -35.29 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.40 Total: -5.66 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.23 -10.79 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.807 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds