Wall clock time and date at job start Tue Mar 31 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00333 * 2 1 4 4 H 1.48499 * 109.47085 * 274.99311 * 3 2 1 5 5 H 1.48502 * 109.47360 * 34.99328 * 3 2 1 6 6 H 1.48500 * 109.47171 * 154.99165 * 3 2 1 7 7 C 1.37882 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 189.57583 * 7 2 1 9 9 C 1.50695 * 120.00026 * 9.57309 * 7 2 1 10 10 C 1.53006 * 109.46802 * 185.44329 * 9 7 2 11 11 C 1.53001 * 109.46719 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47237 * 60.00215 * 11 10 9 13 13 N 1.46897 * 109.47157 * 59.99662 * 12 11 10 14 14 C 1.46901 * 110.99907 * 154.99713 * 13 12 11 15 15 H 1.09005 * 109.47348 * 35.00244 * 14 13 12 16 16 C 1.53000 * 109.47373 * 275.00359 * 14 13 12 17 17 O 1.42904 * 109.47070 * 294.99563 * 16 14 13 18 18 C 1.50701 * 109.47157 * 155.00198 * 14 13 12 19 19 C 1.38242 * 119.98513 * 39.72870 * 18 14 13 20 20 C 1.38221 * 120.00956 * 179.72959 * 19 18 14 21 21 C 1.38349 * 119.98721 * 0.54545 * 20 19 18 22 22 Cl 1.73596 * 120.01222 * 179.70792 * 21 20 19 23 23 C 1.38354 * 119.97351 * 359.72705 * 21 20 19 24 24 C 1.38213 * 119.98557 * 0.02562 * 23 21 20 25 25 C 1.52997 * 109.47024 * 299.99720 * 12 11 10 26 26 C 1.52998 * 109.47068 * 65.44597 * 9 7 2 27 27 H 0.97009 * 119.99908 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47496 * 305.44231 * 9 7 2 29 29 H 1.08999 * 109.46743 * 60.00347 * 10 9 7 30 30 H 1.09000 * 109.47474 * 299.99896 * 10 9 7 31 31 H 1.09007 * 109.47220 * 299.99829 * 11 10 9 32 32 H 1.09007 * 109.46862 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.46908 * 179.97438 * 12 11 10 34 34 H 1.00905 * 111.00005 * 31.04884 * 13 12 11 35 35 H 1.08999 * 109.47421 * 54.99752 * 16 14 13 36 36 H 1.09000 * 109.47124 * 175.00318 * 16 14 13 37 37 H 0.96704 * 114.00129 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99509 * 0.02562 * 19 18 14 39 39 H 1.07995 * 120.00447 * 180.27210 * 20 19 18 40 40 H 1.08001 * 120.00757 * 179.97438 * 23 21 20 41 41 H 1.08005 * 119.99177 * 180.02562 * 24 23 21 42 42 H 1.09004 * 109.47089 * 180.02562 * 25 12 11 43 43 H 1.09003 * 109.46972 * 299.99642 * 25 12 11 44 44 H 1.08995 * 109.47061 * 299.99570 * 26 9 7 45 45 H 1.09000 * 109.47277 * 60.00062 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3911 2.1072 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4118 0.5919 7 6 2.0044 -1.1941 -0.0005 8 1 3.0732 -1.2008 0.1551 9 6 1.2666 -2.4900 -0.2182 10 6 2.2322 -3.6631 -0.0378 11 6 1.4832 -4.9787 -0.2593 12 6 0.9074 -5.0054 -1.6766 13 7 2.0007 -4.8941 -2.6514 14 6 1.6196 -5.4878 -3.9399 15 1 0.5591 -5.3128 -4.1212 16 6 1.8896 -6.9935 -3.9074 17 8 3.2949 -7.2229 -3.7865 18 6 2.4288 -4.8561 -5.0431 19 6 3.7667 -4.5716 -4.8427 20 6 4.5107 -3.9973 -5.8561 21 6 3.9135 -3.6968 -7.0673 22 17 4.8456 -2.9685 -8.3380 23 6 2.5731 -3.9765 -7.2654 24 6 1.8314 -4.5555 -6.2530 25 6 -0.0581 -3.8323 -1.8570 26 6 0.6904 -2.5170 -1.6352 27 1 -0.4850 0.8401 0.0004 28 1 0.4557 -2.5723 0.5054 29 1 2.6426 -3.6438 0.9718 30 1 3.0431 -3.5808 -0.7614 31 1 0.6719 -5.0613 0.4641 32 1 2.1710 -5.8145 -0.1304 33 1 0.3742 -5.9428 -1.8346 34 1 2.8464 -5.3141 -2.2958 35 1 1.3744 -7.4368 -3.0553 36 1 1.5253 -7.4479 -4.8288 37 1 3.5399 -8.1580 -3.7593 38 1 4.2318 -4.8025 -3.8957 39 1 5.5570 -3.7791 -5.7009 40 1 2.1063 -3.7418 -8.2106 41 1 0.7851 -4.7744 -6.4077 42 1 -0.4686 -3.8515 -2.8666 43 1 -0.8693 -3.9149 -1.1337 44 1 0.0026 -1.6813 -1.7637 45 1 1.5014 -2.4347 -2.3589 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:24 Heat of formation + Delta-G solvation = -66.530053 kcal Electronic energy + Delta-G solvation = -25822.050110 eV Core-core repulsion = 22249.353971 eV Total energy + Delta-G solvation = -3572.696140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78902 -39.57964 -38.00669 -37.23044 -35.74652 -34.26591 -32.14546 -31.86619 -31.31564 -29.97266 -28.11065 -26.33437 -24.27257 -23.68083 -23.15906 -22.20866 -21.34066 -19.72384 -18.41356 -18.32719 -17.91119 -16.85592 -16.57981 -16.33999 -16.22725 -15.78129 -15.50881 -15.07287 -14.73824 -14.48955 -14.31551 -14.20198 -14.18154 -13.90102 -13.36962 -13.20880 -13.09809 -12.88234 -12.72936 -12.56556 -12.53832 -12.27682 -12.14925 -12.03641 -11.86626 -11.73325 -11.65773 -11.56940 -11.11586 -10.85073 -10.52512 -10.39107 -10.28404 -9.86063 -9.43084 -9.03992 -8.06730 -6.12669 0.28487 0.48418 1.22018 1.38581 1.41183 1.49892 2.46170 2.74381 3.22543 3.24585 3.61078 3.84014 3.93251 4.05028 4.07971 4.19245 4.25260 4.32931 4.52337 4.53227 4.57701 4.69469 4.70694 4.74926 4.87176 4.87417 4.97050 4.98134 5.05517 5.13421 5.16782 5.26030 5.34894 5.38434 5.42415 5.53040 5.67470 5.70645 5.74103 5.84495 5.97016 6.18497 6.24884 6.35429 6.53821 6.68317 6.97284 7.01840 7.52713 9.01293 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.004201 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.727577 B = 6663.493007 C = 8551.245796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.045 0.955 9 C 0.049 3.951 10 C -0.092 4.092 11 C -0.111 4.111 12 C 0.106 3.894 13 N -0.674 5.674 14 C 0.125 3.875 15 H 0.101 0.899 16 C 0.058 3.942 17 O -0.579 6.579 18 C -0.058 4.058 19 C -0.069 4.069 20 C -0.128 4.128 21 C -0.050 4.050 22 Cl -0.081 7.081 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.100 4.100 26 C -0.075 4.075 27 H 0.257 0.743 28 H -0.012 1.012 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.349 0.651 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.017 0.983 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -17.753 -13.478 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.130 4.130 11 C -0.149 4.149 12 C -0.003 4.003 13 N -0.307 5.307 14 C 0.015 3.985 15 H 0.119 0.881 16 C -0.021 4.021 17 O -0.387 6.387 18 C -0.059 4.059 19 C -0.088 4.088 20 C -0.147 4.147 21 C -0.077 4.077 22 Cl -0.052 7.052 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.114 4.114 27 H 0.066 0.934 28 H 0.006 0.994 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.715 -16.287 -13.748 21.635 hybrid contribution 0.398 0.102 0.294 0.505 sum 4.113 -16.185 -13.454 21.445 Atomic orbital electron populations 1.70093 1.07114 1.26747 1.51866 1.25631 0.95455 1.01928 0.95237 0.85828 0.79156 0.80525 0.77891 1.20614 1.20967 1.19312 1.21641 0.93890 0.93171 1.47998 0.93694 1.18571 0.93297 0.92067 0.92995 1.21348 0.98342 0.94515 0.98794 1.21669 0.99807 0.97416 0.95968 1.21338 0.91756 0.96188 0.91058 1.60344 1.06224 1.61440 1.02708 1.20695 0.98649 0.90604 0.88567 0.88088 1.22760 0.82731 0.95743 1.00911 1.86460 1.22862 1.32226 1.97128 1.19894 0.94159 0.97428 0.94442 1.20910 0.93846 0.95984 0.98056 1.21200 1.01085 1.00349 0.92075 1.21030 0.93239 1.02709 0.90721 1.98345 1.73551 1.81983 1.51368 1.21156 0.91877 1.00046 1.00836 1.21219 1.00757 0.98735 0.92332 1.21510 0.96939 0.95754 0.99598 1.21051 0.97734 0.94663 0.97906 0.93387 0.99362 0.95012 0.92795 0.92326 0.90779 0.92263 0.82971 0.92338 0.92046 0.75629 0.85382 0.84863 0.83759 0.83373 0.92871 0.93739 0.96386 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 12.16 21.45 0.26 -55.14 16 2 C 0.02 0.91 5.20 84.66 0.44 1.35 16 3 Si 0.94 45.69 29.55 68.60 2.03 47.71 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.53 -30.31 8.48 25.60 0.22 -30.09 16 8 H 0.04 2.57 7.77 -2.91 -0.02 2.54 16 9 C 0.05 2.49 1.97 -11.54 -0.02 2.47 16 10 C -0.09 -3.74 4.99 30.60 0.15 -3.59 16 11 C -0.11 -3.40 5.30 30.59 0.16 -3.23 16 12 C 0.11 2.97 2.62 44.91 0.12 3.09 16 13 N -0.67 -17.95 4.02 -473.31 -1.90 -19.85 16 14 C 0.12 2.67 2.46 44.17 0.11 2.78 16 15 H 0.10 2.08 6.97 -2.38 -0.02 2.06 16 16 C 0.06 0.89 6.68 71.98 0.48 1.37 16 17 O -0.58 -9.16 11.48 -148.98 -1.71 -10.87 16 18 C -0.06 -1.40 4.83 -19.86 -0.10 -1.49 16 19 C -0.07 -1.80 8.32 22.27 0.19 -1.61 16 20 C -0.13 -3.27 9.83 22.29 0.22 -3.05 16 21 C -0.05 -1.24 6.32 22.32 0.14 -1.10 16 22 Cl -0.08 -1.86 28.96 -2.72 -0.08 -1.94 16 23 C -0.12 -2.69 9.83 22.29 0.22 -2.47 16 24 C -0.11 -2.43 9.67 22.26 0.22 -2.21 16 25 C -0.10 -3.58 5.51 30.58 0.17 -3.41 16 26 C -0.08 -3.56 4.88 30.58 0.15 -3.41 16 27 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 28 H -0.01 -0.68 8.09 -2.39 -0.02 -0.70 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 2.19 7.48 -2.39 -0.02 2.17 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.07 1.85 8.12 -2.38 -0.02 1.83 16 33 H 0.06 1.34 7.10 -2.39 -0.02 1.32 16 34 H 0.35 9.07 6.74 -89.69 -0.60 8.46 16 35 H 0.06 0.79 7.37 -2.39 -0.02 0.77 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.39 2.92 9.12 -74.05 -0.68 2.24 16 38 H 0.13 3.39 7.01 -2.91 -0.02 3.37 16 39 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.15 2.45 8.04 -2.91 -0.02 2.43 16 42 H 0.05 1.73 7.43 -2.39 -0.02 1.72 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.02 0.97 6.91 -2.39 -0.02 0.95 16 45 H 0.04 1.93 7.60 -2.39 -0.02 1.92 16 Total: -1.00 -67.08 367.12 1.18 -65.91 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.28 Total: 18.79 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 2.86 Total: -44.62 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.64 Total: -74.98 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.71 Total: -10.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -67.08 1.18 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.624 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds