Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00316 * 2 1 4 4 H 1.48501 * 109.46691 * 269.99844 * 3 2 1 5 5 H 1.48501 * 109.46773 * 29.99668 * 3 2 1 6 6 H 1.48498 * 109.47309 * 149.99789 * 3 2 1 7 7 C 1.37879 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00812 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46947 * 60.00010 * 11 10 9 13 13 N 1.46898 * 109.47367 * 59.99860 * 12 11 10 14 14 C 1.46896 * 110.99819 * 154.99732 * 13 12 11 15 15 H 1.09004 * 109.46983 * 35.00575 * 14 13 12 16 16 C 1.52998 * 109.47443 * 275.00277 * 14 13 12 17 17 O 1.42904 * 109.46877 * 294.99805 * 16 14 13 18 18 C 1.50707 * 109.46957 * 154.99836 * 14 13 12 19 19 C 1.38237 * 120.00392 * 25.23740 * 18 14 13 20 20 C 1.38219 * 120.01452 * 180.25422 * 19 18 14 21 21 C 1.38267 * 120.02305 * 359.74114 * 20 19 18 22 22 C 1.38195 * 120.01443 * 0.02562 * 21 20 19 23 23 C 1.38325 * 120.00626 * 204.99812 * 18 14 13 24 24 Cl 1.73599 * 120.01741 * 0.03066 * 23 18 14 25 25 C 1.53003 * 109.46693 * 299.99915 * 12 11 10 26 26 C 1.52994 * 109.47217 * 59.99203 * 9 7 2 27 27 H 0.97003 * 119.99678 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46411 * 299.99528 * 9 7 2 29 29 H 1.09007 * 109.47633 * 59.99442 * 10 9 7 30 30 H 1.09006 * 109.47249 * 299.99695 * 10 9 7 31 31 H 1.08997 * 109.47076 * 299.99613 * 11 10 9 32 32 H 1.09000 * 109.47125 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.46744 * 180.02562 * 12 11 10 34 34 H 1.00897 * 110.99764 * 278.95496 * 13 12 11 35 35 H 1.08996 * 109.47298 * 54.99961 * 16 14 13 36 36 H 1.09000 * 109.47016 * 175.00035 * 16 14 13 37 37 H 0.96702 * 113.99579 * 180.02562 * 17 16 14 38 38 H 1.08000 * 119.99782 * 359.97136 * 19 18 14 39 39 H 1.08001 * 119.99260 * 179.72556 * 20 19 18 40 40 H 1.08003 * 119.99358 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.00765 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.46675 * 180.02562 * 25 12 11 43 43 H 1.09002 * 109.47148 * 299.99802 * 25 12 11 44 44 H 1.09000 * 109.47463 * 300.00205 * 26 9 7 45 45 H 1.09001 * 109.47164 * 60.00787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 0.6001 -5.0685 -1.2478 13 7 1.4442 -4.9910 -2.4475 14 6 0.7890 -5.6337 -3.5945 15 1 -0.2869 -5.4683 -3.5379 16 6 1.0760 -7.1364 -3.5697 17 8 2.4749 -7.3573 -3.7608 18 6 1.3217 -5.0416 -4.8739 19 6 2.5807 -4.4714 -4.9001 20 6 3.0673 -3.9235 -6.0721 21 6 2.2973 -3.9502 -7.2202 22 6 1.0405 -4.5243 -7.1964 23 6 0.5528 -5.0729 -6.0234 24 17 -1.0262 -5.7936 -5.9926 25 6 -0.3941 -3.9055 -1.2477 26 6 0.3717 -2.5805 -1.2489 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 0.8904 29 1 2.8720 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8538 -5.0447 0.8914 32 1 2.1884 -5.8156 0.0007 33 1 0.0548 -6.0123 -1.2470 34 1 1.6858 -4.0344 -2.6584 35 1 0.7711 -7.5487 -2.6079 36 1 0.5184 -7.6260 -4.3681 37 1 2.7298 -8.2901 -3.7568 38 1 3.1825 -4.4499 -4.0036 39 1 4.0492 -3.4742 -6.0910 40 1 2.6782 -3.5224 -8.1358 41 1 0.4389 -4.5447 -8.0932 42 1 -1.0214 -3.9638 -2.1372 43 1 -1.0205 -3.9631 -0.3574 44 1 -0.3366 -1.7520 -1.2493 45 1 0.9986 -2.5230 -2.1387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = -60.561322 kcal Electronic energy + Delta-G solvation = -26227.196479 eV Core-core repulsion = 22654.759163 eV Total energy + Delta-G solvation = -3572.437316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96523 -39.69372 -37.74948 -37.40789 -35.83964 -34.38633 -32.20931 -31.64825 -31.25958 -30.04006 -28.37696 -26.52964 -24.32816 -23.56480 -23.16796 -22.32338 -21.45566 -19.52053 -18.42245 -18.36490 -18.16369 -17.10105 -16.63604 -16.40693 -15.91522 -15.68596 -15.35599 -15.12983 -14.84257 -14.78673 -14.55850 -14.14861 -14.02840 -13.92102 -13.70413 -13.30389 -12.98677 -12.85793 -12.80776 -12.55696 -12.48798 -12.34028 -12.32591 -12.07941 -11.88334 -11.73259 -11.64531 -11.59695 -11.11667 -10.74547 -10.64767 -10.50811 -10.30287 -9.78891 -9.59713 -9.20678 -8.05180 -6.18552 0.22685 0.38701 1.15427 1.40017 1.41179 1.50950 2.44534 2.72959 3.16144 3.21306 3.46303 3.70998 3.96253 4.06883 4.13209 4.15798 4.22613 4.38927 4.43515 4.48128 4.58029 4.61103 4.64055 4.67023 4.76953 4.82905 4.88098 4.93030 4.99725 5.07086 5.10568 5.26942 5.28542 5.31216 5.45434 5.48185 5.52014 5.55981 5.66642 5.73164 5.92579 6.08460 6.19767 6.29060 6.44940 6.47468 6.94613 7.07168 7.49378 8.98129 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004214 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.655910 B = 6643.455992 C = 7384.702307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.048 3.952 10 C -0.097 4.097 11 C -0.094 4.094 12 C 0.099 3.901 13 N -0.665 5.665 14 C 0.121 3.879 15 H 0.064 0.936 16 C 0.102 3.898 17 O -0.568 6.568 18 C -0.078 4.078 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.048 4.048 24 Cl -0.074 7.074 25 C -0.141 4.141 26 C -0.093 4.093 27 H 0.258 0.742 28 H -0.011 1.011 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.342 0.658 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.387 0.613 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -15.094 -14.008 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.011 4.011 13 N -0.299 5.299 14 C 0.011 3.989 15 H 0.082 0.918 16 C 0.024 3.976 17 O -0.374 6.374 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.075 4.075 24 Cl -0.045 7.045 25 C -0.180 4.180 26 C -0.132 4.132 27 H 0.067 0.933 28 H 0.008 0.992 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.235 0.765 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.687 -14.944 -13.856 20.449 hybrid contribution -0.758 1.289 0.154 1.504 sum 0.929 -13.655 -13.702 19.366 Atomic orbital electron populations 1.70023 1.07093 1.26775 1.51840 1.25693 0.95580 1.02135 0.95102 0.85723 0.78865 0.79933 0.78152 1.20243 1.21115 1.19353 1.21634 0.92929 0.92420 1.49790 0.93287 1.18609 0.93026 0.92383 0.93048 1.21408 0.97793 0.94476 0.99751 1.21434 0.98364 0.97347 0.96066 1.21501 0.92125 0.96729 0.90722 1.60858 1.43028 1.23323 1.02650 1.20595 0.96354 0.94429 0.87552 0.91842 1.22009 0.82901 0.93235 0.99493 1.86571 1.23396 1.31438 1.96019 1.19702 0.94870 0.99355 0.93993 1.21113 0.94442 0.96370 0.99236 1.21580 1.01185 0.98690 0.92565 1.21442 0.93330 0.98560 0.99471 1.21270 0.97133 0.98535 0.96823 1.20945 0.87774 1.02894 0.95923 1.98341 1.25285 1.82182 1.98666 1.22178 0.98464 0.96933 1.00385 1.21310 0.98501 0.95778 0.97580 0.93313 0.99244 0.94463 0.93078 0.92591 0.91058 0.89775 0.83601 0.92773 0.93020 0.76530 0.85324 0.83741 0.82387 0.83277 0.93486 0.92863 0.92891 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 11.32 21.45 0.24 -53.53 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.40 2.10 -11.54 -0.02 2.37 16 10 C -0.10 -4.01 4.90 30.59 0.15 -3.86 16 11 C -0.09 -3.19 5.64 30.60 0.17 -3.01 16 12 C 0.10 3.16 2.65 44.92 0.12 3.28 16 13 N -0.66 -20.71 4.78 -473.30 -2.26 -22.97 16 14 C 0.12 3.30 1.95 44.17 0.09 3.38 16 15 H 0.06 1.81 6.10 -2.39 -0.01 1.79 16 16 C 0.10 2.32 6.77 71.98 0.49 2.80 16 17 O -0.57 -13.07 12.86 -148.98 -1.92 -14.99 16 18 C -0.08 -2.15 4.53 -19.84 -0.09 -2.24 16 19 C -0.09 -2.58 8.58 22.26 0.19 -2.39 16 20 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 21 C -0.11 -2.16 10.05 22.27 0.22 -1.94 16 22 C -0.12 -2.53 9.83 22.29 0.22 -2.31 16 23 C -0.05 -1.22 6.31 22.32 0.14 -1.07 16 24 Cl -0.07 -1.70 27.16 -2.72 -0.07 -1.77 16 25 C -0.14 -5.32 5.50 30.61 0.17 -5.15 16 26 C -0.09 -4.39 4.73 30.61 0.14 -4.25 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.05 2.13 7.21 -2.38 -0.02 2.11 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 2.32 7.10 -2.39 -0.02 2.31 16 34 H 0.34 12.24 4.11 -89.70 -0.37 11.87 16 35 H 0.05 1.15 7.38 -2.39 -0.02 1.13 16 36 H 0.05 1.06 7.90 -2.39 -0.02 1.04 16 37 H 0.39 5.33 9.12 -74.06 -0.68 4.65 16 38 H 0.13 3.88 6.98 -2.91 -0.02 3.86 16 39 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.05 1.68 7.43 -2.38 -0.02 1.67 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 45 H 0.03 1.20 6.26 -2.39 -0.01 1.19 16 Total: -1.00 -63.82 361.01 0.86 -62.96 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -0.04 Total: 29.05 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 2.88 Total: -45.09 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.02 Total: -76.51 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.92 Total: -14.99 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.77 kcal Total: -63.82 0.86 -62.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds