Wall clock time and date at job start Tue Mar 31 2020 14:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00394 * 2 1 4 4 H 1.48500 * 109.47352 * 269.99754 * 3 2 1 5 5 H 1.48497 * 109.46932 * 30.00023 * 3 2 1 6 6 H 1.48501 * 109.46869 * 149.99768 * 3 2 1 7 7 C 1.38817 * 119.99455 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00262 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99813 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99606 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46657 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46842 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.47034 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99852 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00401 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99652 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.34779 * 119.99775 * 180.02562 * 17 16 14 19 19 O 1.21568 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.47687 * 119.99770 * 179.97438 * 18 17 16 21 21 C 1.39666 * 120.16823 * 0.02562 * 20 18 17 22 22 C 1.37855 * 119.87959 * 179.97438 * 21 20 18 23 23 C 1.38456 * 120.21923 * 0.02562 * 22 21 20 24 24 C 1.38204 * 120.34081 * 359.97438 * 23 22 21 25 25 C 1.38322 * 120.11403 * 359.95424 * 24 23 22 26 26 F 1.35107 * 120.10830 * 180.02562 * 25 24 23 27 27 H 0.97005 * 119.99772 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99800 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47153 * 60.00423 * 10 9 7 30 30 H 1.09000 * 109.47257 * 299.99694 * 10 9 7 31 31 H 1.08997 * 109.47337 * 60.00116 * 11 10 9 32 32 H 1.09000 * 109.46694 * 299.99619 * 11 10 9 33 33 H 1.09001 * 109.47448 * 60.00006 * 12 11 10 34 34 H 1.08992 * 109.47428 * 299.99671 * 12 11 10 35 35 H 0.96995 * 119.99858 * 0.02562 * 13 12 11 36 36 H 1.08997 * 109.47206 * 60.00088 * 16 14 13 37 37 H 1.08997 * 109.47421 * 300.00025 * 16 14 13 38 38 H 0.96992 * 119.99692 * 359.97438 * 17 16 14 39 39 H 1.08005 * 120.05644 * 0.25078 * 21 20 18 40 40 H 1.07999 * 119.89055 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.82909 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.94497 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4399 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0000 11 6 5.6162 -2.1916 0.0000 12 6 6.3811 -3.5167 0.0007 13 7 7.8214 -3.2491 0.0000 14 6 8.6971 -4.2736 -0.0001 15 8 8.2928 -5.4170 0.0008 16 6 10.1788 -3.9983 -0.0001 17 7 10.9113 -5.2671 0.0004 18 6 12.2590 -5.2672 0.0009 19 8 12.8669 -4.2144 0.0006 20 6 12.9974 -6.5462 0.0020 21 6 12.3025 -7.7578 0.0019 22 6 12.9977 -8.9482 0.0024 23 6 14.3823 -8.9466 0.0035 24 6 15.0791 -7.7531 0.0036 25 6 14.3956 -6.5505 0.0017 26 9 15.0769 -5.3838 0.0013 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3623 -0.0004 29 1 3.8482 -3.0428 -0.8898 30 1 3.8489 -3.0425 0.8902 31 1 5.8796 -1.6201 0.8900 32 1 5.8795 -1.6201 -0.8900 33 1 6.1178 -4.0887 -0.8891 34 1 6.1177 -4.0878 0.8908 35 1 8.1448 -2.3347 -0.0003 36 1 10.4422 -3.4268 0.8899 37 1 10.4422 -3.4267 -0.8900 38 1 10.4262 -6.1071 0.0010 39 1 11.2225 -7.7620 -0.0031 40 1 12.4606 -9.8851 0.0027 41 1 14.9206 -9.8829 0.0043 42 1 16.1590 -7.7593 0.0049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175998107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:03 Heat of formation + Delta-G solvation = -77.781529 kcal Electronic energy + Delta-G solvation = -25090.115231 eV Core-core repulsion = 20985.054472 eV Total energy + Delta-G solvation = -4105.060759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.27231 -40.75361 -39.83278 -38.66843 -36.39136 -34.95923 -34.58745 -32.33682 -32.00110 -31.06491 -30.34163 -28.27926 -25.41087 -24.33278 -23.12730 -22.29058 -21.45359 -21.08372 -20.71959 -19.06918 -17.82813 -17.53790 -17.19776 -16.66095 -16.49643 -16.40158 -16.06184 -15.71485 -15.39239 -15.36065 -14.96879 -14.58354 -14.51271 -14.11223 -13.67447 -13.61740 -13.40012 -13.26487 -12.85546 -12.78706 -12.62718 -12.47388 -12.09437 -11.93617 -11.27932 -11.10273 -10.93958 -10.77144 -10.45199 -10.28237 -10.16618 -9.83241 -9.63225 -9.62326 -9.34425 -9.29926 -8.94360 -7.28805 -5.80485 -3.16966 0.12320 0.56702 2.20235 2.31465 2.33486 3.03994 3.14148 3.33665 3.36029 3.42241 3.63427 4.02687 4.10340 4.29409 4.32634 4.55249 4.60982 4.62202 4.83148 4.87630 4.90566 5.09436 5.10708 5.37695 5.39693 5.40161 5.49635 5.53311 5.66666 5.71102 5.79676 5.83116 5.86034 6.04851 6.16059 6.17970 6.61607 6.64826 6.96789 7.12630 7.68802 7.79954 7.95228 8.38161 9.16753 9.88801 10.07878 11.37778 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036145 B = 0.001610 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.464020 B =17383.945219 C =18127.358728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.143 4.143 12 C 0.122 3.878 13 N -0.720 5.720 14 C 0.508 3.492 15 O -0.540 6.540 16 C 0.100 3.900 17 N -0.712 5.712 18 C 0.561 3.439 19 O -0.524 6.524 20 C -0.174 4.174 21 C -0.055 4.055 22 C -0.138 4.138 23 C -0.063 4.063 24 C -0.166 4.166 25 C 0.160 3.840 26 F -0.114 7.114 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.412 0.588 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.525 -18.017 -0.003 37.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.181 4.181 12 C -0.001 4.001 13 N -0.372 5.372 14 C 0.293 3.707 15 O -0.418 6.418 16 C -0.028 4.028 17 N -0.369 5.369 18 C 0.348 3.652 19 O -0.401 6.401 20 C -0.178 4.178 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.081 4.081 24 C -0.185 4.185 25 C 0.140 3.860 26 F -0.092 7.092 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.251 0.749 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 32.397 -18.096 -0.001 37.108 hybrid contribution 0.471 1.543 0.009 1.613 sum 32.868 -16.553 0.008 36.800 Atomic orbital electron populations 1.69705 1.05117 1.25884 1.57362 1.24690 0.95266 0.97269 1.01914 0.86517 0.79148 0.84881 0.77754 1.21057 1.21665 1.20395 1.19070 0.80556 0.94844 1.43295 0.89141 1.42677 1.04125 1.02114 1.91321 1.20492 0.87540 0.89592 0.99103 1.22009 0.97245 0.96088 1.02767 1.21408 0.77593 0.98164 1.02957 1.45968 1.07333 1.09351 1.74501 1.20419 0.88246 0.85599 0.76436 1.90704 1.79872 1.21221 1.49979 1.21100 0.88735 0.87575 1.05347 1.45538 1.05863 1.09830 1.75644 1.17958 0.81753 0.88660 0.76867 1.90862 1.68026 1.32297 1.48924 1.19973 0.92558 0.94460 1.10833 1.21335 1.00485 0.90863 0.94731 1.21216 0.94355 0.98453 1.01631 1.21275 0.94312 0.97805 0.94699 1.21213 1.01444 0.90851 1.05000 1.17728 0.88500 0.82126 0.97663 1.91612 1.79157 1.45824 1.92649 0.93002 0.80668 0.95151 0.95214 0.91208 0.91192 0.90887 0.90889 0.76079 0.87925 0.87917 0.74900 0.84298 0.84377 0.84327 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -17.59 5.41 -59.91 -0.32 -17.91 16 10 C 0.16 2.91 6.26 -4.04 -0.03 2.89 16 11 C -0.14 -1.86 5.44 -26.73 -0.15 -2.01 16 12 C 0.12 1.39 5.67 -4.04 -0.02 1.36 16 13 N -0.72 -6.55 5.56 -60.30 -0.33 -6.88 16 14 C 0.51 5.05 7.90 -10.99 -0.09 4.96 16 15 O -0.54 -7.04 15.67 5.56 0.09 -6.96 16 16 C 0.10 0.81 6.15 -5.19 -0.03 0.78 16 17 N -0.71 -6.33 5.48 -62.48 -0.34 -6.67 16 18 C 0.56 5.97 7.77 -12.40 -0.10 5.87 16 19 O -0.52 -7.32 15.34 5.31 0.08 -7.24 16 20 C -0.17 -1.52 5.88 -104.91 -0.62 -2.13 16 21 C -0.06 -0.33 9.54 -39.19 -0.37 -0.70 16 22 C -0.14 -0.59 10.03 -39.64 -0.40 -0.99 16 23 C -0.06 -0.25 10.03 -39.51 -0.40 -0.65 16 24 C -0.17 -0.96 10.01 -39.56 -0.40 -1.35 16 25 C 0.16 1.43 7.29 -38.96 -0.28 1.14 16 26 F -0.11 -1.31 15.55 2.25 0.04 -1.27 16 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.36 8.08 5.53 -40.82 -0.23 7.85 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 2.66 8.47 -40.82 -0.35 2.32 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.41 3.28 5.47 -40.82 -0.22 3.06 16 39 H 0.14 0.60 6.41 -52.48 -0.34 0.27 16 40 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 41 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -36.69 364.94 -7.74 -44.42 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.37 Total: 6.29 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.13 Total: 2.07 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.23 Total: -59.90 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.17 Total: -14.19 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.69 -7.74 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175998107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.358 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds