Wall clock time and date at job start Tue Mar 31 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86791 * 120.00330 * 2 1 4 4 H 1.48500 * 109.47257 * 270.00271 * 3 2 1 5 5 H 1.48501 * 109.47355 * 30.00073 * 3 2 1 6 6 H 1.48495 * 109.47410 * 150.00329 * 3 2 1 7 7 C 1.38954 * 119.99404 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99275 * 160.67772 * 7 2 1 9 9 N 1.37096 * 120.00331 * 340.68121 * 7 2 1 10 10 C 1.46498 * 119.99863 * 321.26777 * 9 7 2 11 11 C 1.50701 * 109.46791 * 265.00435 * 10 9 7 12 12 C 1.38235 * 120.00114 * 269.58398 * 11 10 9 13 13 C 1.38234 * 120.00513 * 179.77034 * 12 11 10 14 14 C 1.38237 * 119.99563 * 0.50624 * 13 12 11 15 15 C 1.38234 * 119.99849 * 359.74600 * 14 13 12 16 16 C 1.38235 * 120.00526 * 0.02562 * 15 14 13 17 17 C 1.34773 * 119.99992 * 141.26701 * 9 7 2 18 18 O 1.21290 * 119.99738 * 184.77212 * 17 9 7 19 19 C 1.50698 * 120.00137 * 4.77145 * 17 9 7 20 20 C 1.50691 * 115.55253 * 66.71508 * 19 17 9 21 21 N 1.31799 * 119.12344 * 32.85238 * 20 19 17 22 22 C 1.32334 * 120.82012 * 179.97438 * 21 20 19 23 23 C 1.38597 * 119.10441 * 0.02562 * 22 21 20 24 24 C 1.38604 * 118.40006 * 0.27647 * 23 22 21 25 25 N 1.31801 * 119.12620 * 212.82863 * 20 19 17 26 26 C 1.53003 * 117.51875 * 212.42143 * 19 17 9 27 27 C 1.52992 * 60.00365 * 107.47777 * 26 19 17 28 28 H 0.97005 * 119.99514 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47157 * 25.00213 * 10 9 7 30 30 H 1.09001 * 109.47181 * 145.00238 * 10 9 7 31 31 H 1.08008 * 119.99440 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.00467 * 180.23428 * 13 12 11 33 33 H 1.07999 * 119.99944 * 179.73153 * 14 13 12 34 34 H 1.08010 * 119.99973 * 179.97438 * 15 14 13 35 35 H 1.07997 * 120.00465 * 179.97438 * 16 15 14 36 36 H 1.07993 * 120.44664 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.80020 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.44556 * 179.73051 * 24 23 22 39 39 H 1.09006 * 117.49895 * 214.97278 * 26 19 17 40 40 H 1.09006 * 117.49685 * 359.97438 * 26 19 17 41 41 H 1.08999 * 117.49931 * 252.51294 * 27 26 19 42 42 H 1.08999 * 117.51762 * 107.48104 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0432 -1.2296 -0.3100 9 7 1.3812 -2.3575 0.3917 10 6 0.4404 -2.3343 1.5144 11 6 1.1600 -2.7209 2.7808 12 6 1.2162 -4.0471 3.1666 13 6 1.8804 -4.4023 4.3257 14 6 2.4794 -3.4300 5.1046 15 6 2.4187 -2.1032 4.7216 16 6 1.7586 -1.7485 3.5600 17 6 1.6297 -3.5132 -0.2555 18 8 1.0112 -4.5155 0.0340 19 6 2.6761 -3.5601 -1.3390 20 6 4.0959 -3.3475 -0.8811 21 7 4.4553 -3.7734 0.3133 22 6 5.6934 -3.6048 0.7490 23 6 6.6154 -2.9707 -0.0687 24 6 6.1984 -2.5311 -1.3153 25 7 4.9455 -2.7410 -1.6858 26 6 2.4463 -4.5270 -2.5024 27 6 2.2901 -3.0203 -2.7177 28 1 -0.4850 0.8401 0.0004 29 1 0.0282 -1.3310 1.6225 30 1 -0.3680 -3.0408 1.3257 31 1 0.7447 -4.8063 2.5600 32 1 1.9275 -5.4389 4.6251 33 1 2.9945 -3.7070 6.0125 34 1 2.8863 -1.3434 5.3304 35 1 1.7108 -0.7118 3.2610 36 1 5.9812 -3.9558 1.7289 37 1 7.6329 -2.8183 0.2595 38 1 6.8882 -2.0291 -1.9775 39 1 3.3221 -5.0094 -2.9364 40 1 1.5382 -5.1297 -2.4839 41 1 1.2793 -2.6317 -2.8410 42 1 3.0631 -2.5111 -3.2933 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178348756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:11 Heat of formation + Delta-G solvation = 81.819584 kcal Electronic energy + Delta-G solvation = -27973.258018 eV Core-core repulsion = 24305.887308 eV Total energy + Delta-G solvation = -3667.370710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.81954 -39.08348 -38.14467 -35.89906 -34.70035 -33.32945 -31.86108 -31.40951 -30.61908 -30.21655 -26.17434 -25.22394 -24.30051 -24.16591 -21.95193 -21.86113 -21.74241 -20.38551 -18.99544 -17.70032 -16.96565 -16.61558 -15.94436 -15.57336 -14.90710 -14.75986 -14.62512 -14.49391 -14.28809 -14.24004 -14.02450 -13.46301 -13.21256 -12.94849 -12.75571 -12.17872 -12.03129 -11.88410 -11.43695 -11.28004 -11.00904 -10.96436 -10.84498 -10.60430 -10.49518 -10.46389 -10.33300 -10.28870 -10.04868 -9.91172 -9.16645 -8.94955 -8.80814 -8.51250 -8.25749 -8.01319 -7.49949 -6.40120 -4.07232 1.19506 1.43733 2.00448 2.07217 3.07740 3.17905 3.21368 3.69010 3.95347 4.04921 4.27462 4.34557 4.47550 4.66936 4.82874 4.92060 4.98933 5.20628 5.35764 5.46866 5.49900 5.52900 5.59405 5.62935 5.69492 5.89560 5.96076 6.05787 6.15652 6.18085 6.24894 6.40948 6.50007 6.59755 6.67494 6.72351 6.75944 6.83121 7.08906 7.11957 7.18522 7.36666 7.43702 7.51386 7.69060 7.93185 8.36179 8.50796 9.06638 9.49876 9.93051 10.63130 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.007135 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.865233 B = 3923.638686 C = 4754.795803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.047 3.953 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.321 4.321 8 H 0.080 0.920 9 N -0.423 5.423 10 C 0.151 3.849 11 C -0.076 4.076 12 C -0.096 4.096 13 C -0.130 4.130 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.098 4.098 17 C 0.530 3.470 18 O -0.591 6.591 19 C -0.073 4.073 20 C 0.388 3.612 21 N -0.497 5.497 22 C 0.151 3.849 23 C -0.248 4.248 24 C 0.146 3.854 25 N -0.515 5.515 26 C -0.143 4.143 27 C -0.121 4.121 28 H 0.270 0.730 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 -2.884 1.862 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.159 4.159 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.449 4.449 8 H 0.098 0.902 9 N -0.139 5.139 10 C 0.028 3.972 11 C -0.078 4.078 12 C -0.114 4.114 13 C -0.148 4.148 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.117 4.117 17 C 0.317 3.683 18 O -0.475 6.475 19 C -0.078 4.078 20 C 0.122 3.878 21 N -0.209 5.209 22 C -0.015 4.015 23 C -0.270 4.270 24 C -0.020 4.020 25 N -0.229 5.229 26 C -0.182 4.182 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.783 -3.342 1.723 8.643 hybrid contribution 1.759 1.289 0.508 2.239 sum 9.542 -2.053 2.231 10.012 Atomic orbital electron populations 1.69927 1.05968 1.27706 1.45907 1.25261 0.95017 0.99458 0.96120 0.86304 0.79826 0.82130 0.78784 1.20039 1.20548 1.19677 1.19209 0.95359 0.84693 1.45669 0.90249 1.43146 1.39205 1.06614 1.24943 1.20358 0.90838 1.04023 0.81958 1.20603 0.97777 0.93018 0.96375 1.21248 0.98324 0.96258 0.95619 1.21018 0.99370 0.98574 0.95874 1.20926 1.01243 0.93360 0.99742 1.20997 1.00782 0.95924 0.97455 1.21071 0.97025 0.99546 0.94073 1.18806 0.83572 0.84199 0.81732 1.90497 1.53189 1.35735 1.68115 1.19440 0.88292 1.08428 0.91638 1.21686 0.93701 0.87150 0.85254 1.68240 1.18073 1.19178 1.15450 1.23176 0.88119 0.91291 0.98951 1.22785 1.02461 1.04145 0.97646 1.23117 0.92190 0.92779 0.93939 1.68114 1.03364 1.14541 1.36888 1.23011 1.03329 0.93701 0.98145 1.22918 1.03475 0.94870 0.94605 0.92015 0.87151 0.91809 0.85796 0.87102 0.87289 0.87165 0.86503 0.82136 0.84115 0.81953 0.89113 0.87581 0.87801 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.07 11.49 55.50 0.64 -21.43 16 2 C 0.05 1.18 4.95 -17.46 -0.09 1.09 16 3 Si 0.90 19.67 29.59 -169.99 -5.03 14.64 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.32 -8.13 8.41 -14.93 -0.13 -8.26 16 8 H 0.08 2.07 6.06 -52.49 -0.32 1.76 16 9 N -0.42 -10.58 2.51 -116.10 -0.29 -10.87 16 10 C 0.15 3.64 5.06 -5.19 -0.03 3.61 16 11 C -0.08 -1.66 5.42 -104.62 -0.57 -2.23 16 12 C -0.10 -1.96 9.55 -39.58 -0.38 -2.34 16 13 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 14 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 15 C -0.13 -2.31 10.05 -39.58 -0.40 -2.70 16 16 C -0.10 -1.98 9.70 -39.58 -0.38 -2.37 16 17 C 0.53 13.13 6.47 -10.99 -0.07 13.06 16 18 O -0.59 -15.61 15.55 5.55 0.09 -15.52 16 19 C -0.07 -1.57 1.47 -156.81 -0.23 -1.80 16 20 C 0.39 7.95 5.42 -157.19 -0.85 7.10 16 21 N -0.50 -10.09 9.89 -10.73 -0.11 -10.20 16 22 C 0.15 2.39 11.31 -17.20 -0.19 2.19 16 23 C -0.25 -3.23 10.17 -39.31 -0.40 -3.63 16 24 C 0.15 2.08 11.31 -17.20 -0.19 1.89 16 25 N -0.52 -9.36 9.31 -10.73 -0.10 -9.46 16 26 C -0.14 -2.63 9.76 -26.73 -0.26 -2.89 16 27 C -0.12 -2.31 9.52 -26.73 -0.25 -2.57 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.11 2.77 5.55 -51.93 -0.29 2.48 16 30 H 0.06 1.58 7.45 -51.93 -0.39 1.19 16 31 H 0.12 2.67 7.39 -52.48 -0.39 2.28 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 36 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.11 1.95 8.02 -51.93 -0.42 1.53 16 41 H 0.10 2.08 8.14 -51.93 -0.42 1.66 16 42 H 0.11 1.93 7.51 -51.93 -0.39 1.54 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -30.74 361.29 -9.71 -40.44 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.13 Total: 12.06 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -5.22 Total: -5.11 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.14 Total: -51.96 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.74 -9.71 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178348756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.263 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds