Wall clock time and date at job start Tue Mar 31 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46921 * 310.16896 * 3 2 1 5 5 N 1.46505 * 109.46887 * 185.17228 * 4 3 2 6 6 C 1.46497 * 120.00210 * 275.62545 * 5 4 3 7 7 C 1.50703 * 109.47208 * 270.00002 * 6 5 4 8 8 H 1.07999 * 120.00012 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00289 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00088 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46749 * 90.00384 * 11 9 7 13 13 H 1.48495 * 109.46919 * 210.00193 * 11 9 7 14 14 H 1.48497 * 109.46899 * 330.00187 * 11 9 7 15 15 C 1.34776 * 120.00251 * 95.62637 * 5 4 3 16 16 O 1.21274 * 120.00359 * 185.26163 * 15 5 4 17 17 C 1.50712 * 119.99772 * 5.25921 * 15 5 4 18 18 C 1.50703 * 115.54738 * 67.30864 * 17 15 5 19 19 C 1.37962 * 120.07499 * 241.13024 * 18 17 15 20 20 C 1.38347 * 120.14870 * 180.02562 * 19 18 17 21 21 C 1.38381 * 120.30727 * 359.97356 * 20 19 18 22 22 C 1.37929 * 120.14779 * 0.02562 * 21 20 19 23 23 C 1.39610 * 120.07342 * 61.10994 * 18 17 15 24 24 C 1.43198 * 120.15414 * 359.97438 * 23 18 17 25 25 N 7.61772 * 139.61594 * 279.95392 * 2 1 3 26 26 C 1.53000 * 117.49620 * 212.98061 * 17 15 5 27 27 C 1.52994 * 117.49708 * 281.64226 * 17 15 5 28 28 H 1.08994 * 109.47088 * 190.16942 * 3 2 1 29 29 H 1.09000 * 109.47135 * 70.16728 * 3 2 1 30 30 H 1.09002 * 109.47614 * 65.17525 * 4 3 2 31 31 H 1.08995 * 109.47506 * 305.16993 * 4 3 2 32 32 H 1.08999 * 109.46975 * 29.99649 * 6 5 4 33 33 H 1.08996 * 109.47218 * 150.00302 * 6 5 4 34 34 H 0.96999 * 120.00055 * 179.97438 * 10 9 7 35 35 H 1.07998 * 119.92630 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.84769 * 179.97438 * 20 19 18 37 37 H 1.07992 * 119.92605 * 179.72528 * 21 20 19 38 38 H 1.08002 * 120.07555 * 179.97438 * 22 21 20 39 39 H 1.09004 * 117.49212 * 214.99902 * 26 17 15 40 40 H 1.08993 * 117.50207 * 0.02562 * 26 17 15 41 41 H 1.08996 * 117.50156 * 359.96992 * 27 17 15 42 42 H 1.09001 * 117.50146 * 144.97576 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.9296 1.1023 5 7 4.5781 -0.8350 1.1840 6 6 5.4154 -1.6410 0.2922 7 6 5.7167 -2.9648 0.9463 8 1 5.3234 -3.1840 1.9280 9 6 6.4936 -3.8965 0.2912 10 7 6.9722 -3.6299 -0.9044 11 14 6.8676 -5.5372 1.1024 12 1 5.8177 -6.5212 0.7359 13 1 8.1900 -6.0285 0.6387 14 1 6.8925 -5.3659 2.5772 15 6 5.1506 -0.0064 2.0797 16 8 6.3539 0.1441 2.0837 17 6 4.2953 0.7330 3.0762 18 6 3.6139 -0.1250 4.1109 19 6 2.2367 -0.1533 4.1874 20 6 1.6095 -0.9400 5.1370 21 6 2.3576 -1.7037 6.0157 22 6 3.7352 -1.6848 5.9503 23 6 4.3748 -0.8933 4.9939 24 6 5.8047 -0.8695 4.9197 25 7 6.9386 -0.8531 4.8613 26 6 4.7572 2.1266 3.5069 27 6 3.5470 1.9727 2.5824 28 1 2.9709 1.0123 0.1814 29 1 2.9715 -0.3478 -0.9667 30 1 2.8332 -1.9562 0.8723 31 1 2.6813 -0.6361 2.0566 32 1 4.8878 -1.8112 -0.6462 33 1 6.3482 -1.1130 0.0941 34 1 7.5191 -4.2852 -1.3651 35 1 1.6468 0.4406 3.5050 36 1 0.5311 -0.9582 5.1928 37 1 1.8617 -2.3122 6.7574 38 1 4.3179 -2.2810 6.6369 39 1 4.5682 2.4228 4.5387 40 1 5.6794 2.5088 3.0692 41 1 3.6735 2.2538 1.5369 42 1 2.5616 2.1676 3.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183294059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:05 Heat of formation + Delta-G solvation = 59.419118 kcal Electronic energy + Delta-G solvation = -27502.262191 eV Core-core repulsion = 23833.920123 eV Total energy + Delta-G solvation = -3668.342068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80614 -39.94196 -38.00200 -37.53171 -37.27299 -36.63826 -34.82603 -32.34505 -32.10069 -31.74816 -29.48712 -26.24540 -25.36587 -24.91421 -24.40046 -23.12490 -22.30558 -20.13301 -19.47614 -18.77609 -18.34801 -17.80039 -17.33662 -16.88131 -16.44921 -16.17134 -15.86395 -15.64915 -15.40538 -15.31047 -14.97532 -14.84924 -14.46505 -14.12872 -14.03855 -13.85655 -13.77096 -13.52863 -13.51007 -13.34839 -13.18836 -12.97802 -12.74196 -12.59822 -12.53896 -12.42326 -12.23896 -12.13884 -11.82622 -11.72124 -11.55586 -11.40166 -10.64466 -10.62135 -9.86614 -9.64376 -9.48148 -8.23200 -6.34544 -0.14811 0.35838 1.30682 1.34579 1.42734 1.64775 1.77386 1.82884 1.88946 2.07163 2.24780 2.37988 2.65620 2.90436 3.06101 3.07832 3.13964 3.44581 3.66855 3.87349 3.92126 4.07890 4.12144 4.16655 4.25121 4.47394 4.49774 4.52971 4.65864 4.74248 4.81798 4.83982 4.95960 5.04586 5.07059 5.10722 5.22228 5.29587 5.42331 5.44486 5.53306 5.56891 5.85151 5.94849 6.08532 6.59588 6.64323 6.70273 6.76943 7.29295 7.47425 8.83534 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.005997 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.792918 B = 4667.855708 C = 5716.415640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.246 3.754 3 C -0.041 4.041 4 C 0.108 3.892 5 N -0.589 5.589 6 C 0.261 3.739 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.015 3.985 10 N -0.922 5.922 11 Si 0.949 3.051 12 H -0.257 1.257 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.539 3.461 16 O -0.580 6.580 17 C -0.152 4.152 18 C -0.004 4.004 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.047 4.047 24 C 0.253 3.747 25 N -0.458 5.458 26 C -0.143 4.143 27 C -0.119 4.119 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.040 0.960 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 9.442 11.548 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.072 4.072 3 C -0.082 4.082 4 C -0.016 4.016 5 N -0.319 5.319 6 C 0.140 3.860 7 C -0.574 4.574 8 H 0.064 0.936 9 C -0.185 4.185 10 N -0.562 5.562 11 Si 0.775 3.225 12 H -0.182 1.182 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.327 3.673 16 O -0.459 6.459 17 C -0.155 4.155 18 C -0.007 4.007 19 C -0.131 4.131 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.095 4.095 23 C -0.050 4.050 24 C -0.062 4.062 25 N -0.133 5.133 26 C -0.180 4.180 27 C -0.156 4.156 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.156 0.844 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.169 9.446 11.280 22.611 hybrid contribution 1.653 -1.270 -0.090 2.087 sum -15.516 8.176 11.190 20.804 Atomic orbital electron populations 1.81254 1.13672 1.10202 1.09976 1.28843 0.94542 0.91838 0.91973 1.19797 0.81023 1.04323 1.03104 1.21671 0.79177 1.00681 1.00055 1.47959 1.07118 1.40660 1.36143 1.18791 0.89782 0.88376 0.89006 1.21646 1.31921 1.01058 1.02763 0.93591 1.25646 0.95402 1.01960 0.95461 1.70006 1.35483 1.36605 1.14151 0.85690 0.78174 0.80454 0.78215 1.18174 1.20906 1.20833 1.19948 0.87268 0.79087 0.80994 1.90705 1.17330 1.65528 1.72338 1.20119 1.05626 0.90649 0.99093 1.18836 0.94036 0.95199 0.92600 1.21263 0.91149 1.00597 1.00074 1.21822 1.02212 0.92842 0.92317 1.21503 0.91792 0.99419 1.00223 1.21402 0.96457 0.95830 0.95794 1.16231 0.82812 1.04186 1.01786 1.26326 0.93707 0.93012 0.93131 1.81168 1.14422 1.09168 1.08565 1.23073 0.99558 0.93283 1.02122 1.23495 0.98005 0.92983 1.01092 0.85143 0.86401 0.90083 0.87408 0.94218 0.98296 0.92530 0.81950 0.81292 0.81602 0.84427 0.86101 0.90061 0.86874 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.26 18.54 20.01 0.37 -10.89 16 2 C 0.25 4.75 15.43 89.44 1.38 6.13 16 3 C -0.04 -0.77 6.01 28.79 0.17 -0.60 16 4 C 0.11 2.79 5.12 86.38 0.44 3.23 16 5 N -0.59 -22.41 2.46 -826.16 -2.03 -24.44 16 6 C 0.26 13.16 5.22 85.63 0.45 13.60 16 7 C -0.54 -30.17 9.39 25.60 0.24 -29.93 16 8 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 9 C 0.01 0.84 5.46 84.66 0.46 1.31 16 10 N -0.92 -55.03 13.29 21.45 0.28 -54.74 16 11 Si 0.95 45.64 29.54 68.60 2.03 47.67 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 14 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 15 C 0.54 21.14 5.84 87.66 0.51 21.65 16 16 O -0.58 -29.90 15.65 -3.01 -0.05 -29.94 16 17 C -0.15 -3.99 0.46 -53.67 -0.02 -4.02 16 18 C 0.00 -0.09 4.42 -19.60 -0.09 -0.17 16 19 C -0.11 -1.57 7.51 22.23 0.17 -1.40 16 20 C -0.07 -0.76 10.04 22.33 0.22 -0.53 16 21 C -0.11 -1.37 10.03 22.23 0.22 -1.15 16 22 C -0.07 -1.49 9.76 22.54 0.22 -1.27 16 23 C -0.05 -1.30 5.71 -21.36 -0.12 -1.43 16 24 C 0.25 9.79 13.12 88.34 1.16 10.94 16 25 N -0.46 -21.16 18.30 19.00 0.35 -20.81 16 26 C -0.14 -3.30 9.77 30.62 0.30 -3.00 16 27 C -0.12 -1.88 8.67 30.62 0.27 -1.62 16 28 H 0.13 1.87 6.18 -2.39 -0.01 1.85 16 29 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 31 H 0.11 2.23 3.50 -2.39 -0.01 2.22 16 32 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.00 -0.07 7.36 -2.39 -0.02 -0.08 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.16 1.31 6.48 -2.91 -0.02 1.29 16 36 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 41 H 0.11 1.63 6.75 -2.39 -0.02 1.62 16 42 H 0.15 1.15 6.90 -2.39 -0.02 1.13 16 Total: -1.00 -86.25 369.01 8.00 -78.25 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.07 Total: 3.15 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 5.98 Total: 11.75 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -1.03 Total: -110.87 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -86.25 8.00 -78.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183294059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.665 kcal (2) G-P(sol) polarization free energy of solvation -86.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds