Wall clock time and date at job start Tue Mar 31 2020 13:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46817 * 180.48756 * 3 2 1 5 5 N 1.46497 * 109.47071 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00072 * 269.99656 * 5 4 3 7 7 C 1.50697 * 109.46972 * 269.99979 * 6 5 4 8 8 H 1.07998 * 120.00415 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99541 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00299 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99711 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47254 * 90.00309 * 11 9 7 13 13 H 1.48500 * 109.46882 * 209.99779 * 11 9 7 14 14 H 1.48499 * 109.47270 * 329.99987 * 11 9 7 15 15 C 1.34776 * 119.99875 * 89.99710 * 5 4 3 16 16 O 1.21593 * 119.99831 * 180.02562 * 15 5 4 17 17 N 1.34770 * 120.00403 * 0.02562 * 15 5 4 18 18 C 1.39894 * 120.00436 * 184.50158 * 17 15 5 19 19 C 1.39987 * 119.66146 * 325.03223 * 18 17 15 20 20 C 1.35922 * 120.92913 * 180.25533 * 19 18 17 21 21 C 1.40591 * 119.89516 * 359.74487 * 20 19 18 22 22 C 1.40537 * 121.14233 * 180.02562 * 21 20 19 23 23 C 1.36103 * 119.69302 * 180.02562 * 22 21 20 24 24 C 1.39371 * 120.99658 * 359.95712 * 23 22 21 25 25 C 1.36078 * 120.97153 * 0.02562 * 24 23 22 26 26 C 1.40593 * 119.66283 * 0.02562 * 25 24 23 27 27 C 1.37694 * 119.65696 * 144.77493 * 18 17 15 28 28 H 1.08999 * 109.47099 * 60.48855 * 3 2 1 29 29 H 1.09003 * 109.47192 * 300.48113 * 3 2 1 30 30 H 1.08998 * 109.47509 * 59.99255 * 4 3 2 31 31 H 1.09003 * 109.46714 * 299.99649 * 4 3 2 32 32 H 1.08997 * 109.46702 * 30.00237 * 6 5 4 33 33 H 1.08998 * 109.46944 * 149.99677 * 6 5 4 34 34 H 0.97004 * 120.00135 * 179.97438 * 10 9 7 35 35 H 0.96999 * 120.00158 * 4.50508 * 17 15 5 36 36 H 1.08002 * 119.53772 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.05000 * 179.77093 * 20 19 18 38 38 H 1.08003 * 120.15023 * 0.05102 * 22 21 20 39 39 H 1.07999 * 119.49528 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.50824 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.16962 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.25375 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4434 0.0123 5 7 4.5822 1.4441 0.0129 6 6 5.3142 1.4339 1.2819 7 6 5.5645 2.8512 1.7288 8 1 5.2131 3.6770 1.1279 9 6 6.2413 3.0937 2.9054 10 7 6.6679 2.0881 3.6378 11 14 6.5509 4.8504 3.4597 12 1 5.4200 5.3091 4.3057 13 1 7.8106 4.9072 4.2440 14 1 6.6683 5.7314 2.2701 15 6 5.2566 1.4541 -1.1540 16 8 6.4725 1.4543 -1.1535 17 7 4.5833 1.4640 -2.3214 18 6 5.2800 1.3793 -3.5316 19 6 6.5341 1.9893 -3.6530 20 6 7.2311 1.9276 -4.8183 21 6 6.6943 1.2388 -5.9202 22 6 7.3925 1.1580 -7.1372 23 6 6.8449 0.4841 -8.1852 24 6 5.5991 -0.1304 -8.0712 25 6 4.8941 -0.0737 -6.9087 26 6 5.4270 0.6144 -5.8046 27 6 4.7274 0.6923 -4.5892 28 1 2.9715 -0.5054 -0.8943 29 1 2.9716 -0.5205 0.8857 30 1 2.7536 1.9495 0.9065 31 1 2.7537 1.9645 -0.8734 32 1 4.7251 0.9135 2.0369 33 1 6.2669 0.9216 1.1477 34 1 7.1443 2.2587 4.4654 35 1 3.6155 1.5299 -2.3226 36 1 6.9518 2.5203 -2.8104 37 1 8.1958 2.4065 -4.8975 38 1 8.3593 1.6283 -7.2402 39 1 7.3840 0.4243 -9.1191 40 1 5.1874 -0.6593 -8.9180 41 1 3.9301 -0.5549 -6.8345 42 1 3.7611 0.2211 -4.4867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188604646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:32 Heat of formation + Delta-G solvation = 33.413718 kcal Electronic energy + Delta-G solvation = -25782.397945 eV Core-core repulsion = 22112.928199 eV Total energy + Delta-G solvation = -3669.469746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84373 -40.74332 -38.25839 -37.64316 -36.63708 -35.36292 -34.60315 -33.34775 -32.21904 -30.67337 -29.92201 -28.65647 -25.38929 -25.18750 -24.30350 -23.35539 -22.84242 -20.96129 -19.47264 -18.88845 -18.62294 -18.27755 -17.85488 -17.18574 -16.90581 -16.32319 -16.14463 -15.80277 -15.55954 -15.28696 -15.10004 -14.76338 -14.56926 -14.37492 -14.29777 -14.12654 -13.90469 -13.65219 -13.61061 -13.20864 -12.98556 -12.93543 -12.76275 -12.51077 -12.45772 -12.17681 -12.15395 -11.92143 -11.70132 -11.68423 -11.21097 -10.81384 -10.57899 -10.55813 -9.57906 -9.13791 -8.54491 -8.16251 -6.28536 -0.32871 0.13449 1.18310 1.40250 1.42841 1.51186 1.59680 1.78497 1.82109 2.02151 2.36405 2.46028 2.80366 3.15035 3.26538 3.29342 3.77177 3.95686 4.03197 4.06469 4.14342 4.20856 4.35716 4.43490 4.46197 4.52550 4.53741 4.77802 4.86340 4.93302 5.00687 5.05416 5.12871 5.25617 5.32202 5.37634 5.48662 5.59113 5.60181 5.69430 5.75812 5.83871 6.02307 6.09478 6.13752 6.20581 6.58580 6.80539 7.04638 7.38021 7.65669 8.89706 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003378 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.198224 B = 8287.174562 C =10308.145494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.245 3.755 3 C -0.038 4.038 4 C 0.113 3.887 5 N -0.605 5.605 6 C 0.276 3.724 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.698 3.302 16 O -0.611 6.611 17 N -0.676 5.676 18 C 0.165 3.835 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.084 4.084 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.048 4.048 27 C -0.141 4.141 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.006 0.994 34 H 0.265 0.735 35 H 0.419 0.581 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.283 -4.694 -21.745 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.155 3.845 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.401 3.599 16 O -0.490 6.490 17 N -0.327 5.327 18 C 0.069 3.931 19 C -0.155 4.155 20 C -0.116 4.116 21 C -0.085 4.085 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.049 4.049 27 C -0.162 4.162 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.259 0.741 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.049 -4.735 -21.438 22.773 hybrid contribution 0.617 1.062 1.121 1.662 sum -5.432 -3.674 -20.317 21.349 Atomic orbital electron populations 1.81263 1.14276 1.09853 1.10900 1.29072 0.94837 0.91870 0.91443 1.19820 0.80238 0.99756 1.08078 1.21492 0.79119 0.95234 1.05327 1.47304 1.06334 1.75251 1.04952 1.18772 0.91370 0.95685 0.78696 1.21751 1.36415 0.93574 1.06106 0.92970 1.25678 0.95240 1.00955 0.96743 1.70014 1.39146 1.32359 1.14938 0.85580 0.77847 0.80238 0.78119 1.19248 1.21046 1.20079 1.16068 0.85042 0.77886 0.80943 1.90888 1.13773 1.58146 1.86231 1.42634 1.10592 1.77050 1.02411 1.17636 0.93147 0.96846 0.85427 1.21067 0.95632 1.00524 0.98309 1.21073 1.00041 0.98767 0.91688 1.18351 0.95224 0.99861 0.95068 1.21263 1.00217 0.99650 0.91982 1.21180 0.96303 0.97549 0.99419 1.21213 0.94829 0.99054 0.98325 1.21256 1.01006 0.99155 0.92066 1.18095 0.93861 0.98387 0.94523 1.21111 1.02522 1.00651 0.91944 0.85101 0.85863 0.88928 0.88433 0.94092 0.97551 0.92561 0.74061 0.86972 0.84387 0.84338 0.83655 0.83366 0.83407 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.96 18.54 20.01 0.37 -12.59 16 2 C 0.25 5.11 15.43 89.44 1.38 6.49 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.69 5.17 86.38 0.45 3.13 16 5 N -0.60 -21.64 2.46 -844.20 -2.07 -23.72 16 6 C 0.28 13.13 5.16 85.63 0.44 13.57 16 7 C -0.54 -28.83 9.39 25.60 0.24 -28.59 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.01 0.72 5.46 84.66 0.46 1.18 16 10 N -0.92 -53.12 13.29 21.45 0.28 -52.84 16 11 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 C 0.70 26.30 8.12 179.06 1.45 27.75 16 16 O -0.61 -29.57 13.31 -4.01 -0.05 -29.62 16 17 N -0.68 -18.50 5.20 -317.24 -1.65 -20.15 16 18 C 0.16 4.69 6.28 38.15 0.24 4.93 16 19 C -0.14 -4.44 8.59 22.16 0.19 -4.25 16 20 C -0.10 -2.67 9.75 22.31 0.22 -2.45 16 21 C -0.08 -2.05 5.74 -21.28 -0.12 -2.18 16 22 C -0.11 -2.16 9.76 22.33 0.22 -1.94 16 23 C -0.13 -1.92 9.95 22.05 0.22 -1.70 16 24 C -0.12 -1.66 9.95 22.04 0.22 -1.45 16 25 C -0.12 -1.95 9.77 22.34 0.22 -1.73 16 26 C -0.05 -1.08 5.74 -21.30 -0.12 -1.20 16 27 C -0.14 -3.13 9.71 22.68 0.22 -2.91 16 28 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.10 1.75 6.30 -2.39 -0.02 1.74 16 32 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.01 0.36 7.42 -2.39 -0.02 0.34 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.42 8.03 6.51 -92.71 -0.60 7.43 16 36 H 0.11 4.46 6.17 -2.91 -0.02 4.44 16 37 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -74.90 366.92 5.46 -69.44 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.45 Total: 15.80 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.10 Total: 8.16 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.07 Total: -109.30 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.90 5.46 -69.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188604646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.858 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds