Wall clock time and date at job start Tue Mar 31 2020 13:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47275 * 299.39503 * 3 2 1 5 5 N 1.46497 * 109.46979 * 180.02562 * 4 3 2 6 6 C 1.46509 * 119.99926 * 265.28266 * 5 4 3 7 7 C 1.50695 * 109.47387 * 275.39202 * 6 5 4 8 8 H 1.07996 * 120.00031 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00109 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99727 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47188 * 59.99800 * 11 9 7 13 13 H 1.48493 * 109.46800 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47077 * 299.99798 * 11 9 7 15 15 C 1.34777 * 120.00512 * 85.29123 * 5 4 3 16 16 O 1.21641 * 119.99664 * 4.98783 * 15 5 4 17 17 C 1.47132 * 120.00122 * 184.99227 * 15 5 4 18 18 C 1.36616 * 126.97418 * 316.63856 * 17 15 5 19 19 N 1.34705 * 108.68244 * 179.97438 * 18 17 15 20 20 H 0.96999 * 124.72772 * 179.97438 * 19 18 17 21 21 C 1.36221 * 110.54912 * 0.24220 * 19 18 17 22 22 C 1.35750 * 108.67433 * 359.59734 * 21 19 18 23 23 C 1.48283 * 126.97704 * 180.12483 * 22 21 19 24 24 C 1.39394 * 120.12332 * 130.03557 * 23 22 21 25 25 C 1.38011 * 119.86864 * 179.69546 * 24 23 22 26 26 C 1.38331 * 120.12693 * 0.60540 * 25 24 23 27 27 C 1.38331 * 120.25377 * 359.66983 * 26 25 24 28 28 C 1.38010 * 120.12623 * 0.02737 * 27 26 25 29 29 H 1.09000 * 109.46788 * 179.39616 * 3 2 1 30 30 H 1.09003 * 109.47588 * 59.39840 * 3 2 1 31 31 H 1.09000 * 109.47120 * 60.00316 * 4 3 2 32 32 H 1.08997 * 109.47367 * 300.00331 * 4 3 2 33 33 H 1.09005 * 109.46658 * 35.38923 * 6 5 4 34 34 H 1.08993 * 109.46902 * 155.38792 * 6 5 4 35 35 H 0.97000 * 119.99852 * 180.02562 * 10 9 7 36 36 H 1.07997 * 125.65897 * 359.97438 * 18 17 15 37 37 H 1.07996 * 125.65997 * 179.75665 * 21 19 18 38 38 H 1.07997 * 120.06885 * 359.97438 * 24 23 22 39 39 H 1.07993 * 119.93501 * 180.29577 * 25 24 23 40 40 H 1.07992 * 119.87796 * 179.69591 * 26 25 24 41 41 H 1.08000 * 119.94135 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.05872 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7071 1.2568 5 7 4.5833 -0.7059 1.2570 6 6 5.3169 -1.8582 0.7272 7 6 5.4532 -2.9047 1.8029 8 1 5.0355 -2.7291 2.7832 9 6 6.1110 -4.0866 1.5354 10 7 6.6191 -4.3007 0.3415 11 14 6.2805 -5.3836 2.8690 12 1 4.9311 -5.8166 3.3128 13 1 7.0229 -6.5520 2.3315 14 1 7.0218 -4.8136 4.0226 15 6 5.2563 0.3551 1.7448 16 8 4.6508 1.2716 2.2672 17 6 6.7234 0.4047 1.6452 18 6 7.5987 -0.6149 1.8917 19 7 8.8523 -0.1662 1.6876 20 1 9.6549 -0.6998 1.7969 21 6 8.8363 1.1432 1.3121 22 6 7.5469 1.5643 1.2587 23 6 7.0652 2.9180 0.8922 24 6 6.0584 3.0682 -0.0600 25 6 5.6096 4.3302 -0.3926 26 6 6.1657 5.4455 0.2079 27 6 7.1692 5.3027 1.1493 28 6 7.6215 4.0453 1.4943 29 1 2.9708 1.0284 -0.0108 30 1 2.9716 -0.5223 -0.8845 31 1 2.7555 -1.7349 1.2676 32 1 2.7548 -0.1842 2.1413 33 1 4.7734 -2.2765 -0.1200 34 1 6.3074 -1.5400 0.4022 35 1 7.0816 -5.1323 0.1532 36 1 7.3301 -1.6147 2.1992 37 1 9.7051 1.7453 1.0908 38 1 5.6271 2.1985 -0.5333 39 1 4.8263 4.4476 -1.1267 40 1 5.8150 6.4314 -0.0590 41 1 7.5995 6.1769 1.6153 42 1 8.4047 3.9351 2.2298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191777720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:01 Heat of formation + Delta-G solvation = 60.350320 kcal Electronic energy + Delta-G solvation = -26704.609685 eV Core-core repulsion = 23036.307997 eV Total energy + Delta-G solvation = -3668.301688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79307 -38.66644 -38.50924 -36.53332 -35.06265 -32.99059 -32.21069 -31.38975 -30.66150 -29.29579 -27.95886 -27.22897 -24.30089 -23.15105 -22.65652 -22.24686 -21.05162 -19.45219 -18.46929 -17.46433 -17.24803 -16.55713 -16.29895 -15.89035 -15.19919 -14.84207 -14.66423 -14.61491 -14.27325 -14.08378 -13.66790 -13.27048 -13.23032 -13.13993 -12.82938 -12.72140 -12.58045 -12.37212 -12.23298 -12.04654 -11.68431 -11.53975 -11.27031 -11.09096 -10.90676 -10.83981 -10.75235 -10.58313 -10.25765 -9.86794 -9.21697 -8.91604 -8.70630 -8.66852 -7.93558 -7.77903 -7.62826 -6.30914 -4.39273 1.48788 1.68383 2.57503 2.81677 2.93025 3.00697 3.13997 3.20943 3.24581 3.62972 3.76380 3.99086 4.16667 4.25327 4.48468 4.99965 5.13625 5.15649 5.18940 5.28619 5.36112 5.39259 5.43843 5.69126 5.71874 5.75093 5.84041 5.88912 6.12338 6.17302 6.26609 6.33821 6.39805 6.52725 6.68187 6.70415 6.74386 6.92435 7.15064 7.17425 7.27309 7.39209 7.52224 7.64580 7.76834 7.88502 7.96193 8.32026 8.71216 9.08410 9.29092 10.73958 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.005031 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.746907 B = 5564.710554 C = 7868.571101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.223 3.777 3 C -0.047 4.047 4 C 0.130 3.870 5 N -0.595 5.595 6 C 0.229 3.771 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.891 3.109 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.591 3.409 16 O -0.562 6.562 17 C -0.211 4.211 18 C 0.072 3.928 19 N -0.553 5.553 20 H 0.416 0.584 21 C -0.016 4.016 22 C -0.099 4.099 23 C 0.013 3.987 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.266 0.734 36 H 0.202 0.798 37 H 0.164 0.836 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 10.887 -1.497 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.095 4.095 3 C -0.088 4.088 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.109 3.891 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.522 5.522 11 Si 0.718 3.282 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.381 3.619 16 O -0.443 6.443 17 C -0.220 4.220 18 C -0.063 4.063 19 N -0.146 5.146 20 H 0.252 0.748 21 C -0.145 4.145 22 C -0.106 4.106 23 C 0.013 3.987 24 C -0.114 4.114 25 C -0.137 4.137 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.133 4.133 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.181 0.819 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.832 11.131 -1.346 12.209 hybrid contribution 0.951 -1.264 0.660 1.714 sum 5.783 9.867 -0.687 11.457 Atomic orbital electron populations 1.81166 1.13093 1.09572 1.09174 1.29132 0.95141 0.92531 0.92714 1.19810 0.81266 1.04938 1.02794 1.21045 0.81748 1.01275 0.95540 1.48038 1.04895 1.18763 1.60860 1.19654 0.93196 0.81746 0.94488 1.21533 1.36767 1.01162 0.98617 0.91854 1.24943 0.95250 0.97888 0.95554 1.69921 1.36216 1.25911 1.20180 0.86661 0.78658 0.81033 0.81814 1.19985 1.21181 1.20059 1.17407 0.86017 0.81337 0.77167 1.90710 1.70020 1.38381 1.45156 1.20163 0.92612 0.93646 1.15581 1.23038 0.82152 1.00381 1.00695 1.41535 1.08669 1.10544 1.53860 0.74838 1.21602 0.97638 0.85705 1.09547 1.18980 0.91479 0.92052 1.08134 1.18091 0.95230 0.90643 0.94761 1.21148 0.96176 0.97073 0.96994 1.21015 0.99831 0.92593 1.00269 1.21052 0.97716 0.98293 0.98016 1.20966 0.97889 0.96922 0.98356 1.21143 1.00521 0.91834 0.99803 0.87374 0.87134 0.89272 0.90250 0.94842 0.92928 0.92373 0.78164 0.81913 0.86423 0.86460 0.86746 0.86579 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.74 18.54 42.15 0.78 -6.96 16 2 C 0.22 3.32 15.43 -20.76 -0.32 2.99 16 3 C -0.05 -0.63 6.00 -29.52 -0.18 -0.81 16 4 C 0.13 2.12 5.38 -4.04 -0.02 2.10 16 5 N -0.60 -11.22 2.47 -176.44 -0.44 -11.65 16 6 C 0.23 4.78 4.68 -5.19 -0.02 4.75 16 7 C -0.54 -12.38 7.36 -34.44 -0.25 -12.64 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.88 -21.78 13.29 55.43 0.74 -21.04 16 11 Si 0.89 18.68 29.54 -169.99 -5.02 13.66 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.59 11.78 7.27 -12.65 -0.09 11.69 16 16 O -0.56 -12.35 16.73 5.24 0.09 -12.26 16 17 C -0.21 -3.92 5.39 -103.15 -0.56 -4.48 16 18 C 0.07 1.24 9.53 -16.88 -0.16 1.08 16 19 N -0.55 -7.48 5.88 -12.64 -0.07 -7.55 16 20 H 0.42 4.21 8.96 -40.82 -0.37 3.85 16 21 C -0.02 -0.22 11.79 -16.49 -0.19 -0.41 16 22 C -0.10 -1.63 5.79 -102.94 -0.60 -2.22 16 23 C 0.01 0.21 5.73 -104.91 -0.60 -0.39 16 24 C -0.10 -1.46 9.55 -39.23 -0.37 -1.84 16 25 C -0.12 -1.58 10.03 -39.63 -0.40 -1.98 16 26 C -0.13 -1.62 10.04 -39.51 -0.40 -2.02 16 27 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 28 C -0.11 -1.57 9.72 -39.24 -0.38 -1.96 16 29 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 32 H 0.08 1.35 7.50 -51.93 -0.39 0.96 16 33 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.05 1.14 5.28 -51.93 -0.27 0.87 16 35 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 36 H 0.20 3.84 5.48 -52.49 -0.29 3.55 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -29.24 371.06 -8.46 -37.70 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.08 Total: 9.04 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -5.04 Total: -6.53 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.01 Total: -47.21 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.24 -8.46 -37.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191777720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.050 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds