Wall clock time and date at job start Tue Mar 31 2020 13:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47275 * 299.39503 * 3 2 1 5 5 N 1.46497 * 109.46979 * 180.02562 * 4 3 2 6 6 C 1.46509 * 119.99926 * 265.28266 * 5 4 3 7 7 C 1.50695 * 109.47387 * 275.39202 * 6 5 4 8 8 H 1.07996 * 120.00031 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00109 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99727 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47188 * 59.99800 * 11 9 7 13 13 H 1.48493 * 109.46800 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47077 * 299.99798 * 11 9 7 15 15 C 1.34777 * 120.00512 * 85.29123 * 5 4 3 16 16 O 1.21641 * 119.99664 * 4.98783 * 15 5 4 17 17 C 1.47132 * 120.00122 * 184.99227 * 15 5 4 18 18 C 1.36616 * 126.97418 * 316.63856 * 17 15 5 19 19 N 1.34705 * 108.68244 * 179.97438 * 18 17 15 20 20 H 0.96999 * 124.72772 * 179.97438 * 19 18 17 21 21 C 1.36221 * 110.54912 * 0.24220 * 19 18 17 22 22 C 1.35750 * 108.67433 * 359.59734 * 21 19 18 23 23 C 1.48283 * 126.97704 * 180.12483 * 22 21 19 24 24 C 1.39394 * 120.12332 * 130.03557 * 23 22 21 25 25 C 1.38011 * 119.86864 * 179.69546 * 24 23 22 26 26 C 1.38331 * 120.12693 * 0.60540 * 25 24 23 27 27 C 1.38331 * 120.25377 * 359.66983 * 26 25 24 28 28 C 1.38010 * 120.12623 * 0.02737 * 27 26 25 29 29 H 1.09000 * 109.46788 * 179.39616 * 3 2 1 30 30 H 1.09003 * 109.47588 * 59.39840 * 3 2 1 31 31 H 1.09000 * 109.47120 * 60.00316 * 4 3 2 32 32 H 1.08997 * 109.47367 * 300.00331 * 4 3 2 33 33 H 1.09005 * 109.46658 * 35.38923 * 6 5 4 34 34 H 1.08993 * 109.46902 * 155.38792 * 6 5 4 35 35 H 0.97000 * 119.99852 * 180.02562 * 10 9 7 36 36 H 1.07997 * 125.65897 * 359.97438 * 18 17 15 37 37 H 1.07996 * 125.65997 * 179.75665 * 21 19 18 38 38 H 1.07997 * 120.06885 * 359.97438 * 24 23 22 39 39 H 1.07993 * 119.93501 * 180.29577 * 25 24 23 40 40 H 1.07992 * 119.87796 * 179.69591 * 26 25 24 41 41 H 1.08000 * 119.94135 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.05872 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7071 1.2568 5 7 4.5833 -0.7059 1.2570 6 6 5.3169 -1.8582 0.7272 7 6 5.4532 -2.9047 1.8029 8 1 5.0355 -2.7291 2.7832 9 6 6.1110 -4.0866 1.5354 10 7 6.6191 -4.3007 0.3415 11 14 6.2805 -5.3836 2.8690 12 1 4.9311 -5.8166 3.3128 13 1 7.0229 -6.5520 2.3315 14 1 7.0218 -4.8136 4.0226 15 6 5.2563 0.3551 1.7448 16 8 4.6508 1.2716 2.2672 17 6 6.7234 0.4047 1.6452 18 6 7.5987 -0.6149 1.8917 19 7 8.8523 -0.1662 1.6876 20 1 9.6549 -0.6998 1.7969 21 6 8.8363 1.1432 1.3121 22 6 7.5469 1.5643 1.2587 23 6 7.0652 2.9180 0.8922 24 6 6.0584 3.0682 -0.0600 25 6 5.6096 4.3302 -0.3926 26 6 6.1657 5.4455 0.2079 27 6 7.1692 5.3027 1.1493 28 6 7.6215 4.0453 1.4943 29 1 2.9708 1.0284 -0.0108 30 1 2.9716 -0.5223 -0.8845 31 1 2.7555 -1.7349 1.2676 32 1 2.7548 -0.1842 2.1413 33 1 4.7734 -2.2765 -0.1200 34 1 6.3074 -1.5400 0.4022 35 1 7.0816 -5.1323 0.1532 36 1 7.3301 -1.6147 2.1992 37 1 9.7051 1.7453 1.0908 38 1 5.6271 2.1985 -0.5333 39 1 4.8263 4.4476 -1.1267 40 1 5.8150 6.4314 -0.0590 41 1 7.5995 6.1769 1.6153 42 1 8.4047 3.9351 2.2298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191777720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:00 Heat of formation + Delta-G solvation = 46.274386 kcal Electronic energy + Delta-G solvation = -26705.220063 eV Core-core repulsion = 23036.307997 eV Total energy + Delta-G solvation = -3668.912066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02896 -40.13729 -39.52091 -37.86603 -36.64639 -34.69624 -33.31067 -32.79893 -31.65876 -30.55198 -29.15414 -28.88397 -25.66192 -24.88622 -23.69060 -23.28754 -22.40050 -20.61283 -19.72064 -18.83763 -18.62724 -18.26230 -17.36287 -17.25877 -16.74385 -16.14756 -15.89761 -15.79889 -15.65007 -15.43597 -14.87657 -14.55677 -14.48713 -14.29158 -14.12155 -14.03712 -13.88669 -13.66743 -13.56332 -13.44840 -13.06363 -12.94648 -12.71908 -12.70807 -12.47062 -12.09957 -11.89704 -11.79946 -11.78303 -11.63822 -10.76920 -10.51088 -10.05534 -9.67285 -9.42378 -9.17589 -8.75722 -8.12952 -6.25741 0.45762 0.67756 1.18138 1.45463 1.50436 1.55007 1.62520 1.70283 1.76495 2.31571 2.41243 2.51804 2.69892 3.11123 3.17031 3.19334 3.96685 4.09328 4.15033 4.18779 4.27042 4.32484 4.41168 4.43105 4.54660 4.63389 4.78000 4.81224 4.89726 5.00857 5.05590 5.06801 5.13506 5.32401 5.36038 5.40628 5.64011 5.75460 5.76815 5.84352 5.92748 6.01082 6.15951 6.16772 6.28912 6.52821 6.67579 6.82395 6.93191 7.41656 7.57431 8.90769 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.005031 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.746907 B = 5564.710554 C = 7868.571101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.126 3.874 5 N -0.594 5.594 6 C 0.245 3.755 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.036 3.964 10 N -0.909 5.909 11 Si 0.941 3.059 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.589 3.411 16 O -0.589 6.589 17 C -0.240 4.240 18 C 0.061 3.939 19 N -0.537 5.537 20 H 0.433 0.567 21 C 0.010 3.990 22 C -0.124 4.124 23 C -0.010 4.010 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.123 4.123 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.046 0.954 35 H 0.267 0.733 36 H 0.181 0.819 37 H 0.205 0.795 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 12.326 -1.500 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.072 4.072 4 C 0.001 3.999 5 N -0.323 5.323 6 C 0.124 3.876 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.166 4.166 10 N -0.547 5.547 11 Si 0.767 3.233 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.380 3.620 16 O -0.471 6.471 17 C -0.250 4.250 18 C -0.075 4.075 19 N -0.132 5.132 20 H 0.272 0.728 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.010 4.010 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.141 4.141 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.198 0.802 37 H 0.222 0.778 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.343 12.556 -1.347 14.132 hybrid contribution 0.514 -1.648 0.673 1.853 sum 6.857 10.908 -0.673 12.902 Atomic orbital electron populations 1.81189 1.14108 1.10838 1.10345 1.29168 0.95018 0.91374 0.91589 1.19689 0.80274 1.05171 1.02028 1.21112 0.80574 1.01551 0.96653 1.47987 1.05723 1.18087 1.60552 1.19338 0.92902 0.81763 0.93552 1.21611 1.36280 1.01689 0.98433 0.93033 1.25416 0.95079 0.99211 0.96854 1.69992 1.37039 1.26327 1.21386 0.85878 0.78126 0.79166 0.80089 1.20621 1.21100 1.19490 1.17686 0.86834 0.80904 0.76539 1.90673 1.70765 1.39237 1.46458 1.20299 0.92119 0.95382 1.17150 1.22599 0.83685 0.99385 1.01853 1.41496 1.08141 1.10894 1.52646 0.72792 1.22180 0.97983 0.85282 1.06507 1.19238 0.92216 0.92169 1.09422 1.18250 0.96154 0.90983 0.95643 1.21192 0.97077 0.97542 0.97936 1.21283 1.00248 0.92258 1.00711 1.21442 0.97215 0.99179 0.97345 1.21363 0.97433 0.97402 0.97885 1.21382 1.00961 0.91851 0.99938 0.86742 0.85203 0.89306 0.91096 0.95855 0.93596 0.92406 0.80186 0.77803 0.87980 0.84802 0.83904 0.83598 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.55 18.54 20.01 0.37 -16.18 16 2 C 0.25 7.22 15.43 89.44 1.38 8.60 16 3 C -0.03 -0.82 6.00 28.79 0.17 -0.64 16 4 C 0.13 4.20 5.38 86.38 0.46 4.66 16 5 N -0.59 -22.93 2.47 -830.36 -2.05 -24.97 16 6 C 0.25 10.44 4.68 85.63 0.40 10.84 16 7 C -0.54 -25.10 7.36 25.60 0.19 -24.91 16 8 H 0.05 2.48 7.81 -2.91 -0.02 2.46 16 9 C 0.04 1.69 5.46 84.66 0.46 2.15 16 10 N -0.91 -44.86 13.29 21.45 0.28 -44.58 16 11 Si 0.94 38.27 29.54 68.60 2.03 40.30 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 13 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 15 C 0.59 24.12 7.27 86.58 0.63 24.75 16 16 O -0.59 -26.52 16.73 -4.16 -0.07 -26.59 16 17 C -0.24 -9.05 5.39 -18.91 -0.10 -9.15 16 18 C 0.06 2.12 9.53 83.87 0.80 2.92 16 19 N -0.54 -13.78 5.88 -193.89 -1.14 -14.92 16 20 H 0.43 7.92 8.96 -92.71 -0.83 7.09 16 21 C 0.01 0.25 11.79 83.43 0.98 1.23 16 22 C -0.12 -3.98 5.79 -18.77 -0.11 -4.09 16 23 C -0.01 -0.30 5.73 -20.05 -0.11 -0.41 16 24 C -0.12 -3.65 9.55 22.49 0.21 -3.44 16 25 C -0.13 -3.22 10.03 22.24 0.22 -3.00 16 26 C -0.13 -2.93 10.04 22.31 0.22 -2.70 16 27 C -0.12 -2.67 10.03 22.24 0.22 -2.45 16 28 C -0.12 -3.14 9.72 22.49 0.22 -2.92 16 29 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.09 2.94 8.04 -2.39 -0.02 2.92 16 32 H 0.07 2.48 7.50 -2.39 -0.02 2.47 16 33 H 0.02 1.04 8.11 -2.38 -0.02 1.02 16 34 H 0.05 2.05 5.28 -2.39 -0.01 2.03 16 35 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 36 H 0.18 7.08 5.48 -2.91 -0.02 7.06 16 37 H 0.21 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.10 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -63.59 371.06 5.92 -57.67 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.23 Total: 27.83 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.26 Total: 1.43 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -2.53 Total: -100.65 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.07 Total: -26.59 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.59 5.92 -57.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191777720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.946 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds