Wall clock time and date at job start Tue Mar 31 2020 13:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53009 * 109.47289 * 316.96567 * 3 2 1 5 5 N 1.46497 * 109.46944 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99878 * 88.16842 * 5 4 3 7 7 C 1.50699 * 109.47171 * 90.42094 * 6 5 4 8 8 H 1.07999 * 120.00032 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99780 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00174 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00012 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47203 * 59.99655 * 11 9 7 13 13 H 1.48497 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46727 * 299.99712 * 11 9 7 15 15 C 1.34778 * 119.99868 * 268.16053 * 5 4 3 16 16 O 1.21692 * 120.00367 * 6.21412 * 15 5 4 17 17 C 1.46729 * 119.99695 * 186.21123 * 15 5 4 18 18 C 1.36668 * 126.01438 * 187.95028 * 17 15 5 19 19 C 1.40829 * 107.05151 * 180.02562 * 18 17 15 20 20 C 1.48446 * 126.28873 * 180.02562 * 19 18 17 21 21 C 1.39314 * 120.11650 * 359.72850 * 20 19 18 22 22 C 1.38026 * 119.87417 * 179.72311 * 21 20 19 23 23 C 1.38315 * 120.12389 * 0.54835 * 22 21 20 24 24 C 1.38321 * 120.23749 * 359.72147 * 23 22 21 25 25 C 1.38024 * 120.11769 * 0.02562 * 24 23 22 26 26 C 1.36604 * 107.42195 * 359.97438 * 19 18 17 27 27 N 1.34850 * 108.60734 * 359.73590 * 26 19 18 28 28 H 0.97001 * 125.52141 * 180.28657 * 27 26 19 29 29 H 1.08993 * 109.47293 * 196.96007 * 3 2 1 30 30 H 1.09005 * 109.46842 * 76.96180 * 3 2 1 31 31 H 1.09002 * 109.46637 * 59.99561 * 4 3 2 32 32 H 1.08994 * 109.46457 * 300.00226 * 4 3 2 33 33 H 1.09003 * 109.46815 * 210.42008 * 6 5 4 34 34 H 1.09003 * 109.46996 * 330.41485 * 6 5 4 35 35 H 0.96996 * 120.00466 * 179.97438 * 10 9 7 36 36 H 1.08000 * 126.47721 * 359.97438 * 18 17 15 37 37 H 1.07998 * 120.05904 * 359.96815 * 21 20 19 38 38 H 1.08005 * 119.93821 * 180.29141 * 22 21 20 39 39 H 1.08000 * 119.88161 * 179.75101 * 23 22 21 40 40 H 1.08000 * 119.94109 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.06119 * 180.02562 * 25 24 23 42 42 H 1.08004 * 125.69210 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1185 -1.0535 0.9845 5 7 4.5835 -1.0533 0.9839 6 6 5.3161 -0.1579 1.8828 7 6 5.5769 -0.8614 3.1897 8 1 5.2311 -1.8740 3.3363 9 6 6.2560 -0.2120 4.1987 10 7 6.6766 1.0212 4.0203 11 14 6.5787 -1.0837 5.8190 12 1 7.3859 -2.3053 5.5717 13 1 7.3203 -0.1757 6.7304 14 1 5.2856 -1.4628 6.4431 15 6 5.2572 -1.8768 0.1567 16 8 4.6540 -2.5376 -0.6682 17 6 6.7181 -1.9765 0.2506 18 6 7.5351 -2.6470 -0.6158 19 6 8.8541 -2.4831 -0.1503 20 6 10.0815 -3.0371 -0.7749 21 6 9.9903 -3.8071 -1.9324 22 6 11.1353 -4.3150 -2.5122 23 6 12.3705 -4.0703 -1.9398 24 6 12.4662 -3.3112 -0.7875 25 6 11.3281 -2.7941 -0.2023 26 6 8.7966 -1.7195 0.9810 27 7 7.5077 -1.4059 1.2234 28 1 7.1884 -0.8678 1.9646 29 1 2.9708 0.9837 0.2998 30 1 2.9713 -0.2310 -1.0012 31 1 2.7555 -2.0366 0.6846 32 1 2.7550 -0.8219 1.9855 33 1 6.2650 0.1204 1.4243 34 1 4.7236 0.7388 2.0646 35 1 7.1540 1.4783 4.7302 36 1 7.2274 -3.1992 -1.4915 37 1 9.0259 -4.0028 -2.3773 38 1 11.0663 -4.9081 -3.4121 39 1 13.2635 -4.4730 -2.3945 40 1 13.4330 -3.1234 -0.3444 41 1 11.4039 -2.2011 0.6972 42 1 9.6427 -1.4145 1.5789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195648743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:01 Heat of formation + Delta-G solvation = 67.078050 kcal Electronic energy + Delta-G solvation = -26013.136649 eV Core-core repulsion = 22345.126698 eV Total energy + Delta-G solvation = -3668.009951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.09580 -39.04485 -38.36795 -36.68150 -35.56186 -33.42076 -32.35839 -31.26397 -30.83489 -29.52362 -28.02242 -27.59315 -24.46505 -23.55178 -22.72518 -22.35522 -20.71277 -19.40128 -19.26717 -17.65581 -17.26101 -16.84247 -16.21030 -15.96211 -15.40260 -14.88448 -14.81894 -14.65278 -14.49256 -14.25290 -13.75517 -13.39823 -13.23519 -13.15772 -12.99101 -12.70940 -12.58165 -12.45720 -12.33226 -12.24933 -11.97053 -11.74740 -11.45883 -11.30063 -11.07140 -10.90343 -10.76627 -10.72292 -10.49127 -10.18627 -9.52036 -9.48700 -8.99960 -8.78274 -8.28018 -7.97095 -7.35432 -6.63644 -4.78161 1.35069 1.57671 2.10643 2.81558 2.90809 3.00788 3.07804 3.10813 3.18764 3.50853 3.86007 3.96557 4.06660 4.25844 4.31971 4.67994 5.00931 5.03137 5.09273 5.16619 5.26338 5.28103 5.42572 5.56986 5.61163 5.64921 5.67452 5.90399 5.96795 6.09877 6.15030 6.21422 6.24733 6.36593 6.40911 6.63626 6.66479 6.70847 6.90620 7.09424 7.15739 7.23606 7.33076 7.47742 7.52296 7.66601 7.94650 8.20587 8.37514 8.70938 8.94336 10.38778 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003949 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.857371 B = 7089.469603 C = 9444.211500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.129 3.871 5 N -0.598 5.598 6 C 0.216 3.784 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.068 3.932 10 N -0.879 5.879 11 Si 0.899 3.101 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.590 3.410 16 O -0.556 6.556 17 C -0.039 4.039 18 C -0.109 4.109 19 C -0.172 4.172 20 C 0.021 3.979 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.115 4.115 25 C -0.128 4.128 26 C 0.038 3.962 27 N -0.505 5.505 28 H 0.452 0.548 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.275 0.725 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -3.277 -6.459 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.088 4.088 4 C 0.004 3.996 5 N -0.328 5.328 6 C 0.095 3.905 7 C -0.604 4.604 8 H 0.090 0.910 9 C -0.139 4.139 10 N -0.515 5.515 11 Si 0.725 3.275 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.380 3.620 16 O -0.435 6.435 17 C -0.153 4.153 18 C -0.135 4.135 19 C -0.178 4.178 20 C 0.020 3.980 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.162 4.162 24 C -0.133 4.133 25 C -0.147 4.147 26 C -0.105 4.105 27 N -0.112 5.112 28 H 0.311 0.689 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.392 -3.274 -6.581 9.741 hybrid contribution 0.666 -0.017 1.429 1.577 sum 7.058 -3.291 -5.152 9.338 Atomic orbital electron populations 1.81180 1.13058 1.09195 1.09235 1.29087 0.95097 0.92761 0.92752 1.19787 0.81361 1.03539 1.04087 1.21138 0.80817 0.98641 0.99026 1.48011 1.05582 1.40049 1.39189 1.19857 0.92731 0.89871 0.88012 1.21617 1.38518 1.01557 0.98688 0.91022 1.25081 0.94878 0.94800 0.99098 1.69902 1.36192 1.10714 1.34685 0.86490 0.79151 0.79618 0.82261 1.19555 1.20658 1.19526 1.17177 0.85255 0.79117 0.80445 1.90750 1.68880 1.46555 1.37364 1.19940 0.91162 1.08192 0.96035 1.20861 0.90911 1.01758 0.99937 1.18101 0.92239 1.08225 0.99276 1.18258 0.91337 0.94781 0.93577 1.21161 0.98562 0.98456 0.95923 1.21024 0.92615 0.99989 0.99739 1.21039 0.97385 1.00685 0.97046 1.21000 0.98080 0.98124 0.96143 1.21135 0.91827 1.01269 1.00442 1.22001 0.88010 1.01593 0.98887 1.44136 1.05518 1.38019 1.23537 0.68909 0.87041 0.87057 0.89703 0.89210 0.94009 0.93159 0.91499 0.84124 0.85963 0.86485 0.86764 0.86506 0.86181 0.81837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.33 18.54 42.15 0.78 -6.55 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.05 -0.58 6.03 -29.51 -0.18 -0.75 16 4 C 0.13 1.95 5.34 -4.04 -0.02 1.93 16 5 N -0.60 -10.75 2.46 -176.58 -0.43 -11.19 16 6 C 0.22 4.27 4.67 -5.19 -0.02 4.25 16 7 C -0.57 -12.37 7.41 -34.44 -0.26 -12.62 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.07 1.52 5.10 -17.82 -0.09 1.43 16 10 N -0.88 -20.32 13.29 55.43 0.74 -19.58 16 11 Si 0.90 18.07 29.54 -169.99 -5.02 13.05 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.59 11.45 7.62 -12.83 -0.10 11.35 16 16 O -0.56 -11.47 16.49 5.20 0.09 -11.39 16 17 C -0.04 -0.74 6.58 -82.38 -0.54 -1.28 16 18 C -0.11 -1.90 9.97 -39.17 -0.39 -2.29 16 19 C -0.17 -2.81 6.05 -105.30 -0.64 -3.45 16 20 C 0.02 0.31 5.88 -104.89 -0.62 -0.31 16 21 C -0.12 -1.63 9.58 -39.26 -0.38 -2.01 16 22 C -0.12 -1.33 10.03 -39.63 -0.40 -1.73 16 23 C -0.14 -1.57 10.04 -39.52 -0.40 -1.97 16 24 C -0.12 -1.31 10.03 -39.63 -0.40 -1.71 16 25 C -0.13 -1.66 9.57 -39.26 -0.38 -2.03 16 26 C 0.04 0.62 11.30 -16.82 -0.19 0.43 16 27 N -0.50 -9.43 4.80 -9.53 -0.05 -9.47 16 28 H 0.45 9.01 3.30 -40.82 -0.13 8.88 16 29 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.32 7.46 -51.93 -0.39 0.93 16 32 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.04 0.87 5.16 -51.93 -0.27 0.60 16 34 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 36 H 0.14 2.28 7.39 -52.49 -0.39 1.90 16 37 H 0.12 1.52 7.08 -52.49 -0.37 1.15 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.38 7.01 -52.49 -0.37 1.01 16 42 H 0.16 2.23 7.26 -52.48 -0.38 1.85 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -26.16 364.45 -8.51 -34.66 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.80 Total: 12.98 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -5.31 Total: -8.00 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 1.04 Total: -46.79 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.16 -8.51 -34.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195648743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.743 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds