Wall clock time and date at job start Tue Mar 31 2020 14:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48508 * 109.46850 * 90.00504 * 3 2 1 5 5 H 1.48504 * 109.47102 * 210.00045 * 3 2 1 6 6 H 1.48499 * 109.47360 * 330.00418 * 3 2 1 7 7 C 1.38811 * 119.99926 * 180.28242 * 2 1 3 8 8 H 1.07994 * 120.00419 * 359.71741 * 7 2 1 9 9 N 1.36941 * 119.99866 * 179.72491 * 7 2 1 10 10 C 1.46499 * 119.99986 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47236 * 304.99506 * 11 10 9 13 13 C 1.54812 * 109.46578 * 184.99757 * 11 10 9 14 14 N 1.45123 * 109.53458 * 172.12242 * 13 11 10 15 15 C 1.34782 * 118.76087 * 269.26193 * 14 13 11 16 16 O 1.21510 * 120.00084 * 171.74297 * 15 14 13 17 17 C 1.48159 * 119.99688 * 351.74338 * 15 14 13 18 18 C 1.39901 * 120.90708 * 224.42374 * 17 15 14 19 19 C 1.38039 * 119.06844 * 180.02562 * 18 17 15 20 20 N 1.31882 * 120.93243 * 359.97438 * 19 18 17 21 21 C 1.31954 * 122.01595 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.58933 * 179.97438 * 21 20 19 23 23 C 1.38529 * 120.82559 * 359.71855 * 21 20 19 24 24 C 1.47506 * 122.48485 * 89.28841 * 14 13 11 25 25 C 1.53568 * 111.02937 * 318.36388 * 24 14 13 26 26 C 1.51530 * 109.58093 * 320.02671 * 25 24 14 27 27 O 1.38011 * 109.46847 * 64.99480 * 11 10 9 28 28 H 0.96997 * 120.00263 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99954 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47034 * 300.00361 * 10 9 7 31 31 H 1.09001 * 109.47009 * 60.00059 * 10 9 7 32 32 H 1.08991 * 109.46374 * 292.14331 * 13 11 10 33 33 H 1.08999 * 109.45870 * 52.10646 * 13 11 10 34 34 H 1.07996 * 120.46325 * 359.97438 * 18 17 15 35 35 H 1.07991 * 119.53391 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.51591 * 180.29334 * 23 21 20 37 37 H 1.09001 * 109.16764 * 78.76667 * 24 14 13 38 38 H 1.09001 * 109.16809 * 198.01783 * 24 14 13 39 39 H 1.09005 * 109.45238 * 80.05633 * 25 24 14 40 40 H 1.09000 * 109.45159 * 199.98729 * 25 24 14 41 41 H 1.09004 * 109.58929 * 211.18442 * 26 25 24 42 42 H 1.08997 * 109.58829 * 331.46898 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4002 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6528 -0.6999 7 6 2.0102 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 7 3.3796 -1.2021 -0.0116 10 6 4.1121 -2.4708 -0.0173 11 6 5.6163 -2.1911 -0.0236 12 1 5.8620 -1.5437 -0.8654 13 6 6.3887 -3.5262 -0.1568 14 7 7.8008 -3.2526 -0.3499 15 6 8.2704 -3.1237 -1.6067 16 8 9.4107 -2.7479 -1.7937 17 6 7.3961 -3.4401 -2.7602 18 6 7.8744 -4.1902 -3.8400 19 6 7.0272 -4.4624 -4.8952 20 7 5.7824 -4.0266 -4.8950 21 6 5.2901 -3.3163 -3.8979 22 9 4.0076 -2.8943 -3.9489 23 6 6.0702 -3.0022 -2.7970 24 6 8.7417 -3.1109 0.7772 25 6 8.1156 -2.2966 1.9187 26 6 7.3173 -1.1448 1.3423 27 8 5.9733 -1.5685 1.1552 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0119 30 1 3.8524 -3.0442 0.8725 31 1 3.8451 -3.0405 -0.9074 32 1 6.2538 -4.1158 0.7499 33 1 6.0064 -4.0831 -1.0122 34 1 8.8925 -4.5504 -3.8481 35 1 7.3887 -5.0404 -5.7327 36 1 5.6607 -2.4245 -1.9816 37 1 9.0079 -4.1008 1.1478 38 1 9.6425 -2.6049 0.4299 39 1 7.4564 -2.9384 2.5033 40 1 8.9047 -1.9059 2.5611 41 1 7.3419 -0.3015 2.0326 42 1 7.7453 -0.8462 0.3854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200006533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:35 Heat of formation + Delta-G solvation = -32.123015 kcal Electronic energy + Delta-G solvation = -28687.657433 eV Core-core repulsion = 24584.576576 eV Total energy + Delta-G solvation = -4103.080857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.00968 -41.49577 -39.84240 -38.76836 -35.72334 -35.34868 -33.82796 -32.53342 -31.29710 -31.18530 -29.38847 -27.13456 -25.88525 -24.70502 -23.93341 -22.57734 -21.71860 -21.30756 -20.01713 -18.33073 -17.94430 -17.77109 -17.26865 -16.96665 -16.48940 -16.11849 -16.03085 -15.77089 -15.23292 -14.92167 -14.42551 -14.26462 -14.10783 -13.83249 -13.61934 -13.38090 -13.29157 -12.96808 -12.73851 -12.59546 -12.42465 -12.34107 -12.21472 -11.59359 -11.31210 -11.00061 -10.87239 -10.75605 -10.50778 -10.23527 -10.14199 -9.92539 -9.65958 -9.59028 -9.30554 -8.92312 -8.90471 -7.25259 -5.75731 -3.11845 0.34456 0.58091 2.22775 2.45885 3.22411 3.34616 3.39335 3.43178 3.47125 3.60050 3.80015 4.27422 4.43404 4.48919 4.52488 4.58036 4.61092 4.71887 4.81321 4.88303 4.97277 5.13789 5.20736 5.21371 5.33444 5.41478 5.45117 5.46807 5.52084 5.56034 5.61598 5.74111 5.79461 5.87516 6.08266 6.23495 6.31874 6.49761 6.83740 7.29428 7.60101 7.64100 7.97811 8.42298 9.20490 9.92779 10.11517 11.42404 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.005397 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.123209 B = 5186.972716 C = 7077.768996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.748 5.748 10 C 0.165 3.835 11 C 0.072 3.928 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.599 5.599 15 C 0.559 3.441 16 O -0.524 6.524 17 C -0.058 4.058 18 C -0.140 4.140 19 C 0.137 3.863 20 N -0.502 5.502 21 C 0.319 3.681 22 F -0.094 7.094 23 C -0.191 4.191 24 C 0.109 3.891 25 C -0.165 4.165 26 C 0.069 3.931 27 O -0.364 6.364 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.837 -10.247 -2.423 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.037 3.963 11 C 0.012 3.988 12 H 0.073 0.927 13 C -0.066 4.066 14 N -0.331 5.331 15 C 0.347 3.653 16 O -0.400 6.400 17 C -0.069 4.069 18 C -0.161 4.161 19 C -0.020 4.020 20 N -0.217 5.217 21 C 0.166 3.834 22 F -0.072 7.072 23 C -0.212 4.212 24 C -0.012 4.012 25 C -0.204 4.204 26 C -0.008 4.008 27 O -0.282 6.282 28 H 0.070 0.930 29 H 0.197 0.803 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.489 -10.272 -3.025 23.118 hybrid contribution 0.959 1.424 0.456 1.776 sum 21.448 -8.848 -2.569 23.343 Atomic orbital electron populations 1.69694 1.05075 1.25842 1.57373 1.24628 0.95174 0.97131 1.01838 0.86558 0.79117 0.85078 0.77797 1.21001 1.20514 1.21760 1.19008 0.80286 0.94820 1.43272 0.89059 1.42540 1.04045 1.01728 1.91083 1.20670 0.84991 0.90657 0.99948 1.22678 0.96872 0.91664 0.87629 0.92711 1.22925 0.79449 0.99303 1.04877 1.47823 1.09500 1.70149 1.05627 1.18291 0.86605 0.77620 0.82834 1.90790 1.18708 1.45417 1.85111 1.20130 0.93084 0.97984 0.95662 1.22197 1.02045 0.98701 0.93115 1.22545 0.86656 0.95454 0.97379 1.66942 1.16478 1.11038 1.27222 1.18050 0.81100 0.93706 0.90594 1.91770 1.33089 1.86461 1.95917 1.23092 0.93764 1.03456 1.00839 1.21929 0.92504 1.00905 0.85828 1.22490 1.01079 0.98874 0.97914 1.22221 0.82257 0.95947 1.00376 1.86463 1.27402 1.76653 1.37694 0.93033 0.80278 0.93908 0.93928 0.88327 0.88575 0.83145 0.80816 0.80789 0.91086 0.88731 0.89751 0.89335 0.88848 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 22.41 27.74 -169.99 -4.72 17.70 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.28 -6.69 6.51 56.52 0.37 -6.32 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 7 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.53 5.34 -59.91 -0.32 -17.85 16 10 C 0.17 2.99 5.67 -4.04 -0.02 2.97 16 11 C 0.07 1.04 1.63 -25.78 -0.04 1.00 16 12 H 0.06 0.85 6.12 -51.93 -0.32 0.53 16 13 C 0.06 0.65 4.40 -3.83 -0.02 0.63 16 14 N -0.60 -6.52 2.19 -173.47 -0.38 -6.90 16 15 C 0.56 6.92 7.30 -12.18 -0.09 6.83 16 16 O -0.52 -7.65 16.30 5.36 0.09 -7.57 16 17 C -0.06 -0.67 5.13 -104.66 -0.54 -1.21 16 18 C -0.14 -1.31 9.81 -39.03 -0.38 -1.69 16 19 C 0.14 1.26 11.17 -17.60 -0.20 1.07 16 20 N -0.50 -6.47 10.35 -13.65 -0.14 -6.62 16 21 C 0.32 4.52 8.41 -17.39 -0.15 4.38 16 22 F -0.09 -1.56 17.29 2.25 0.04 -1.52 16 23 C -0.19 -2.47 7.51 -38.93 -0.29 -2.76 16 24 C 0.11 0.99 6.20 -3.20 -0.02 0.97 16 25 C -0.17 -1.44 5.78 -27.18 -0.16 -1.60 16 26 C 0.07 0.80 6.37 36.41 0.23 1.03 16 27 O -0.36 -5.49 9.38 -26.52 -0.25 -5.74 16 28 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 29 H 0.36 8.56 5.51 -40.82 -0.22 8.33 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.75 7.82 -51.93 -0.41 0.34 16 32 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.10 1.02 5.19 -51.93 -0.27 0.75 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.18 2.41 2.34 -52.49 -0.12 2.29 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.92 6.94 -51.93 -0.36 0.56 16 39 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.61 7.41 -51.93 -0.38 0.23 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -34.45 341.11 -6.74 -41.19 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.05 Total: 5.93 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.92 Total: 4.75 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.07 Total: -59.89 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.16 Total: -13.31 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.72 Total: 17.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.45 -6.74 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200006533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.071 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds