Wall clock time and date at job start Tue Mar 31 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48508 * 109.46850 * 90.00504 * 3 2 1 5 5 H 1.48504 * 109.47102 * 210.00045 * 3 2 1 6 6 H 1.48499 * 109.47360 * 330.00418 * 3 2 1 7 7 C 1.38811 * 119.99926 * 180.28242 * 2 1 3 8 8 H 1.07994 * 120.00419 * 359.71741 * 7 2 1 9 9 N 1.36941 * 119.99866 * 179.72491 * 7 2 1 10 10 C 1.46499 * 119.99986 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46873 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47236 * 304.99506 * 11 10 9 13 13 C 1.54812 * 109.46578 * 184.99757 * 11 10 9 14 14 N 1.45123 * 109.53458 * 172.12242 * 13 11 10 15 15 C 1.34782 * 118.76087 * 269.26193 * 14 13 11 16 16 O 1.21510 * 120.00084 * 171.74297 * 15 14 13 17 17 C 1.48159 * 119.99688 * 351.74338 * 15 14 13 18 18 C 1.39901 * 120.90708 * 224.42374 * 17 15 14 19 19 C 1.38039 * 119.06844 * 180.02562 * 18 17 15 20 20 N 1.31882 * 120.93243 * 359.97438 * 19 18 17 21 21 C 1.31954 * 122.01595 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.58933 * 179.97438 * 21 20 19 23 23 C 1.38529 * 120.82559 * 359.71855 * 21 20 19 24 24 C 1.47506 * 122.48485 * 89.28841 * 14 13 11 25 25 C 1.53568 * 111.02937 * 318.36388 * 24 14 13 26 26 C 1.51530 * 109.58093 * 320.02671 * 25 24 14 27 27 O 1.38011 * 109.46847 * 64.99480 * 11 10 9 28 28 H 0.96997 * 120.00263 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99954 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47034 * 300.00361 * 10 9 7 31 31 H 1.09001 * 109.47009 * 60.00059 * 10 9 7 32 32 H 1.08991 * 109.46374 * 292.14331 * 13 11 10 33 33 H 1.08999 * 109.45870 * 52.10646 * 13 11 10 34 34 H 1.07996 * 120.46325 * 359.97438 * 18 17 15 35 35 H 1.07991 * 119.53391 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.51591 * 180.29334 * 23 21 20 37 37 H 1.09001 * 109.16764 * 78.76667 * 24 14 13 38 38 H 1.09001 * 109.16809 * 198.01783 * 24 14 13 39 39 H 1.09005 * 109.45238 * 80.05633 * 25 24 14 40 40 H 1.09000 * 109.45159 * 199.98729 * 25 24 14 41 41 H 1.09004 * 109.58929 * 211.18442 * 26 25 24 42 42 H 1.08997 * 109.58829 * 331.46898 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 1.4002 5 1 3.5477 1.4402 -0.7001 6 1 1.4476 2.6528 -0.6999 7 6 2.0102 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 7 3.3796 -1.2021 -0.0116 10 6 4.1121 -2.4708 -0.0173 11 6 5.6163 -2.1911 -0.0236 12 1 5.8620 -1.5437 -0.8654 13 6 6.3887 -3.5262 -0.1568 14 7 7.8008 -3.2526 -0.3499 15 6 8.2704 -3.1237 -1.6067 16 8 9.4107 -2.7479 -1.7937 17 6 7.3961 -3.4401 -2.7602 18 6 7.8744 -4.1902 -3.8400 19 6 7.0272 -4.4624 -4.8952 20 7 5.7824 -4.0266 -4.8950 21 6 5.2901 -3.3163 -3.8979 22 9 4.0076 -2.8943 -3.9489 23 6 6.0702 -3.0022 -2.7970 24 6 8.7417 -3.1109 0.7772 25 6 8.1156 -2.2966 1.9187 26 6 7.3173 -1.1448 1.3423 27 8 5.9733 -1.5685 1.1552 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0119 30 1 3.8524 -3.0442 0.8725 31 1 3.8451 -3.0405 -0.9074 32 1 6.2538 -4.1158 0.7499 33 1 6.0064 -4.0831 -1.0122 34 1 8.8925 -4.5504 -3.8481 35 1 7.3887 -5.0404 -5.7327 36 1 5.6607 -2.4245 -1.9816 37 1 9.0079 -4.1008 1.1478 38 1 9.6425 -2.6049 0.4299 39 1 7.4564 -2.9384 2.5033 40 1 8.9047 -1.9059 2.5611 41 1 7.3419 -0.3015 2.0326 42 1 7.7453 -0.8462 0.3854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200006533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:33 Heat of formation + Delta-G solvation = -56.723444 kcal Electronic energy + Delta-G solvation = -28688.724188 eV Core-core repulsion = 24584.576576 eV Total energy + Delta-G solvation = -4104.147612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.15206 -42.43400 -40.77609 -39.80898 -36.96526 -36.59594 -35.10715 -33.75032 -32.96771 -32.07545 -30.69244 -28.08243 -27.19741 -25.73756 -24.90221 -24.14788 -22.92051 -22.42518 -20.92085 -19.81443 -19.27740 -18.94624 -18.23897 -17.92996 -17.53442 -17.19436 -17.01264 -16.75878 -16.48439 -16.13860 -16.10494 -15.22727 -15.07388 -14.98562 -14.89212 -14.70220 -14.38940 -14.29045 -14.05302 -13.85583 -13.58472 -13.43884 -13.19042 -12.88848 -12.83803 -12.49880 -12.16109 -11.98957 -11.82493 -11.72289 -11.52262 -11.16029 -11.02189 -10.85642 -10.62744 -10.20683 -9.85286 -9.31526 -8.02225 -5.35190 -0.54898 -0.30538 1.29329 1.35777 1.38840 1.45351 1.59900 2.33020 2.44075 2.47553 2.54929 2.87739 3.30123 3.36950 3.46680 3.55669 3.67004 3.76146 3.78466 3.89935 3.94369 4.10295 4.17420 4.24227 4.30536 4.37017 4.40392 4.57494 4.60214 4.69445 4.75032 4.79604 4.80322 5.00709 5.02315 5.15276 5.27788 5.37090 5.75220 5.93173 6.20781 6.43255 6.57327 6.69987 7.07156 7.82169 8.00302 9.19182 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011020 B = 0.005397 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.123209 B = 5186.972716 C = 7077.768996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.259 1.259 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.752 5.752 10 C 0.161 3.839 11 C 0.083 3.917 12 H 0.046 0.954 13 C 0.070 3.930 14 N -0.594 5.594 15 C 0.561 3.439 16 O -0.548 6.548 17 C -0.066 4.066 18 C -0.121 4.121 19 C 0.147 3.853 20 N -0.521 5.521 21 C 0.290 3.710 22 F -0.120 7.120 23 C -0.193 4.193 24 C 0.106 3.894 25 C -0.155 4.155 26 C 0.062 3.938 27 O -0.389 6.389 28 H 0.258 0.742 29 H 0.365 0.635 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.219 0.781 36 H 0.163 0.837 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.400 -11.194 -2.357 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.184 1.184 6 H -0.222 1.222 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.398 5.398 10 C 0.034 3.966 11 C 0.023 3.977 12 H 0.063 0.937 13 C -0.054 4.054 14 N -0.325 5.325 15 C 0.348 3.652 16 O -0.426 6.426 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.010 4.010 20 N -0.236 5.236 21 C 0.138 3.862 22 F -0.099 7.099 23 C -0.214 4.214 24 C -0.014 4.014 25 C -0.193 4.193 26 C -0.013 4.013 27 O -0.308 6.308 28 H 0.066 0.934 29 H 0.198 0.802 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.198 0.802 35 H 0.236 0.764 36 H 0.180 0.820 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 24.098 -11.248 -2.939 26.756 hybrid contribution -0.056 1.588 0.417 1.643 sum 24.041 -9.661 -2.522 26.032 Atomic orbital electron populations 1.69864 1.06949 1.26567 1.59816 1.25397 0.96003 1.00890 1.02774 0.85488 0.78420 0.80274 0.78053 1.20367 1.18439 1.22217 1.19019 0.82374 0.93646 1.40980 0.91937 1.42550 1.02552 1.03790 1.90909 1.20814 0.87371 0.88437 0.99931 1.22385 0.94607 0.93401 0.87301 0.93721 1.22741 0.79300 0.97323 1.06015 1.47873 1.09399 1.69318 1.05873 1.18363 0.86276 0.77226 0.83301 1.90782 1.19671 1.46684 1.85457 1.20222 0.92373 0.98680 0.96434 1.22589 1.03148 0.96668 0.91736 1.23328 0.85125 0.94220 0.98331 1.66980 1.18284 1.11298 1.27024 1.18204 0.80581 0.95519 0.91866 1.91692 1.34949 1.87130 1.96176 1.22873 0.94369 1.03927 1.00241 1.22122 0.91788 1.02267 0.85206 1.22425 1.01348 0.97649 0.97872 1.22442 0.80960 0.97573 1.00374 1.86399 1.29670 1.77127 1.37601 0.93354 0.80203 0.93842 0.93401 0.86538 0.88060 0.80244 0.76440 0.82043 0.88746 0.89185 0.89630 0.86652 0.87932 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.67 13.97 21.65 0.30 -63.37 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.95 46.91 27.74 68.60 1.90 48.81 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.26 -11.80 6.51 99.48 0.65 -11.15 16 6 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 7 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 8 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 9 N -0.75 -35.50 5.34 -343.46 -1.83 -37.34 16 10 C 0.16 5.84 5.67 86.38 0.49 6.33 16 11 C 0.08 2.34 1.63 31.21 0.05 2.39 16 12 H 0.05 1.38 6.12 -2.39 -0.01 1.36 16 13 C 0.07 1.44 4.40 87.26 0.38 1.83 16 14 N -0.59 -11.53 2.19 -821.03 -1.80 -13.33 16 15 C 0.56 12.66 7.30 86.88 0.63 13.30 16 16 O -0.55 -14.77 16.30 -3.75 -0.06 -14.84 16 17 C -0.07 -1.41 5.13 -19.89 -0.10 -1.51 16 18 C -0.12 -1.87 9.81 22.63 0.22 -1.65 16 19 C 0.15 2.26 11.17 84.64 0.95 3.20 16 20 N -0.52 -12.82 10.35 -197.09 -2.04 -14.86 16 21 C 0.29 8.30 8.41 84.74 0.71 9.02 16 22 F -0.12 -4.21 17.29 44.97 0.78 -3.44 16 23 C -0.19 -4.92 7.51 22.69 0.17 -4.75 16 24 C 0.11 1.60 6.20 86.38 0.54 2.13 16 25 C -0.16 -2.21 5.78 30.30 0.18 -2.04 16 26 C 0.06 1.32 6.37 71.50 0.46 1.78 16 27 O -0.39 -11.21 9.38 -117.81 -1.11 -12.32 16 28 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 29 H 0.37 16.99 5.51 -92.71 -0.51 16.48 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.71 7.82 -2.39 -0.02 1.69 16 32 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 33 H 0.10 2.01 5.19 -2.39 -0.01 2.00 16 34 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.22 1.30 8.06 -2.92 -0.02 1.28 16 36 H 0.16 4.50 2.34 -2.91 -0.01 4.50 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.50 6.94 -2.39 -0.02 1.48 16 39 H 0.09 1.26 8.01 -2.38 -0.02 1.24 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.04 0.94 7.41 -2.39 -0.02 0.92 16 Total: -1.00 -77.20 341.11 2.67 -74.53 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.51 Total: 21.50 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.02 Total: 14.64 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.37 Total: -128.90 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.17 Total: -27.15 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -77.20 2.67 -74.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200006533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.808 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds