Wall clock time and date at job start Tue Mar 31 2020 14:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99448 * 2 1 4 4 H 1.48498 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46784 * 299.99680 * 3 2 1 6 6 H 1.48491 * 109.47223 * 59.99858 * 3 2 1 7 7 C 1.38810 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00125 * 180.27692 * 9 7 2 11 11 C 1.53000 * 109.46922 * 179.72754 * 10 9 7 12 12 H 1.09004 * 109.47003 * 60.01038 * 11 10 9 13 13 C 1.54811 * 109.46863 * 179.97438 * 11 10 9 14 14 N 1.45118 * 109.54263 * 187.88002 * 13 11 10 15 15 C 1.34781 * 118.75854 * 90.73716 * 14 13 11 16 16 O 1.21507 * 119.99630 * 354.03340 * 15 14 13 17 17 C 1.48156 * 119.99612 * 174.03857 * 15 14 13 18 18 C 1.39893 * 120.90704 * 323.78283 * 17 15 14 19 19 C 1.38042 * 119.06474 * 179.80263 * 18 17 15 20 20 N 1.31881 * 120.93549 * 0.49100 * 19 18 17 21 21 C 1.31967 * 122.01235 * 359.73873 * 20 19 18 22 22 F 1.35102 * 119.58555 * 179.97438 * 21 20 19 23 23 C 1.38522 * 120.82625 * 0.02562 * 21 20 19 24 24 C 1.47509 * 122.48398 * 270.71945 * 14 13 11 25 25 C 1.53575 * 111.03015 * 41.63023 * 24 14 13 26 26 C 1.51527 * 109.58058 * 39.97726 * 25 24 14 27 27 O 1.38012 * 109.47170 * 300.00696 * 11 10 9 28 28 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00400 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46866 * 299.72363 * 10 9 7 31 31 H 1.08990 * 109.47237 * 59.72693 * 10 9 7 32 32 H 1.09005 * 109.45820 * 307.90310 * 13 11 10 33 33 H 1.09000 * 109.45967 * 67.86666 * 13 11 10 34 34 H 1.07992 * 120.46962 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.53396 * 180.20868 * 19 18 17 36 36 H 1.07997 * 120.51497 * 179.97438 * 23 21 20 37 37 H 1.09000 * 109.16709 * 162.02769 * 24 14 13 38 38 H 1.08996 * 109.16530 * 281.22926 * 24 14 13 39 39 H 1.09001 * 109.44916 * 160.01221 * 25 24 14 40 40 H 1.09002 * 109.45005 * 279.94074 * 25 24 14 41 41 H 1.09001 * 109.59485 * 28.38214 * 26 25 24 42 42 H 1.08998 * 109.59004 * 148.82236 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2126 6 1 1.8912 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0083 11 6 1.0641 -4.8196 0.0150 12 1 0.4373 -4.7668 -0.8752 13 6 1.8383 -6.1602 0.0214 14 7 0.9077 -7.2590 -0.1598 15 6 0.6430 -7.6849 -1.4108 16 8 1.0936 -7.0832 -2.3655 17 6 -0.1976 -8.8866 -1.6218 18 6 -0.1231 -9.9777 -0.7496 19 6 -0.9266 -11.0763 -0.9797 20 7 -1.7492 -11.1107 -2.0100 21 6 -1.8481 -10.1061 -2.8600 22 9 -2.7069 -10.1938 -3.8993 23 6 -1.0817 -8.9633 -2.7007 24 6 0.2410 -7.9276 0.9735 25 6 -0.2226 -6.9050 2.0214 26 6 -0.7796 -5.6804 1.3242 27 8 0.2709 -4.7403 1.1416 28 1 -0.4851 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0016 30 1 2.6847 -3.7192 -0.8816 31 1 2.6852 -3.7095 0.8983 32 1 2.5661 -6.1632 -0.7901 33 1 2.3558 -6.2762 0.9737 34 1 0.5509 -9.9594 0.0940 35 1 -0.8777 -11.9215 -0.3092 36 1 -1.1664 -8.1443 -3.3996 37 1 -0.6238 -8.4794 0.6050 38 1 0.9381 -8.6250 1.4379 39 1 -0.9967 -7.3508 2.6459 40 1 0.6235 -6.6147 2.6443 41 1 -1.1871 -5.9657 0.3543 42 1 -1.5646 -5.2366 1.9365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200006536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:37 Heat of formation + Delta-G solvation = -72.613888 kcal Electronic energy + Delta-G solvation = -27536.541997 eV Core-core repulsion = 23431.705324 eV Total energy + Delta-G solvation = -4104.836673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.19233 -42.23887 -40.82986 -39.59591 -37.07592 -36.34020 -34.49662 -33.96136 -32.69375 -32.14283 -30.37288 -28.05489 -27.08221 -25.80460 -24.77046 -24.24269 -22.85065 -22.32959 -21.02433 -19.34949 -19.26170 -18.58835 -17.86145 -17.65446 -17.49749 -17.33284 -17.15988 -16.87700 -16.52574 -15.96676 -15.86435 -15.27947 -15.16065 -14.99298 -14.80193 -14.63287 -14.50935 -14.30455 -13.95327 -13.66590 -13.50461 -13.17718 -13.07240 -12.80546 -12.67491 -12.36331 -12.16674 -12.02961 -11.83818 -11.62077 -11.44763 -11.20018 -10.99450 -10.77649 -10.58651 -10.14807 -9.78463 -9.01684 -7.94701 -5.24468 -0.56034 -0.27778 1.37102 1.46533 1.48536 1.58664 1.67627 2.40060 2.42971 2.55717 2.69565 2.99083 3.38996 3.47352 3.58197 3.65309 3.67334 3.82813 3.95856 4.01720 4.06630 4.25683 4.27495 4.34133 4.38018 4.43953 4.53278 4.62887 4.64965 4.69815 4.77495 4.80949 4.87604 5.07749 5.12304 5.16735 5.36060 5.41826 5.47354 6.03761 6.25886 6.44224 6.72083 6.80821 7.32195 8.06858 8.31387 9.29429 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.002792 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.505327 B =10027.545145 C =10521.481778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.102 3.898 12 H 0.017 0.983 13 C 0.095 3.905 14 N -0.593 5.593 15 C 0.547 3.453 16 O -0.565 6.565 17 C -0.063 4.063 18 C -0.134 4.134 19 C 0.148 3.852 20 N -0.518 5.518 21 C 0.294 3.706 22 F -0.119 7.119 23 C -0.156 4.156 24 C 0.088 3.912 25 C -0.157 4.157 26 C 0.062 3.938 27 O -0.395 6.395 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.194 0.806 35 H 0.223 0.777 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 -28.767 5.223 29.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.035 3.965 11 C 0.042 3.958 12 H 0.035 0.965 13 C -0.029 4.029 14 N -0.324 5.324 15 C 0.335 3.665 16 O -0.444 6.444 17 C -0.074 4.074 18 C -0.153 4.153 19 C -0.009 4.009 20 N -0.233 5.233 21 C 0.141 3.859 22 F -0.098 7.098 23 C -0.178 4.178 24 C -0.031 4.031 25 C -0.195 4.195 26 C -0.014 4.014 27 O -0.314 6.314 28 H 0.059 0.941 29 H 0.205 0.795 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.211 0.789 35 H 0.239 0.761 36 H 0.161 0.839 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.024 -28.946 4.700 29.343 hybrid contribution -0.063 2.041 -0.952 2.253 sum -1.087 -26.905 3.748 27.187 Atomic orbital electron populations 1.69858 1.06815 1.25973 1.59581 1.25652 0.96459 1.01356 1.03670 0.84997 0.78267 0.79368 0.76659 1.18737 1.22123 1.21808 1.19723 0.91613 0.85207 1.41136 0.90274 1.42441 1.05649 1.01006 1.89278 1.20780 0.93097 0.83985 0.98641 1.21908 0.91876 0.94842 0.87190 0.96533 1.22243 0.91714 0.84252 1.04715 1.47911 1.44107 1.33971 1.06372 1.18696 0.80480 0.83986 0.83356 1.90841 1.53428 1.57978 1.42146 1.20078 0.96052 0.95558 0.95751 1.23025 1.00575 0.91835 0.99907 1.23385 0.87765 0.98276 0.91477 1.66994 1.22833 1.28306 1.05152 1.17976 0.90091 0.91236 0.86557 1.91626 1.67734 1.96257 1.54160 1.21846 0.97258 0.99006 0.99701 1.22859 0.98919 0.95420 0.85935 1.22462 1.03695 0.94901 0.98425 1.22414 0.89251 0.90328 0.99430 1.86375 1.45730 1.56594 1.42710 0.94056 0.79540 0.94706 0.94515 0.89632 0.86569 0.78921 0.76062 0.83941 0.87762 0.86335 0.85943 0.89831 0.94674 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.19 13.06 21.65 0.28 -61.90 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 3 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.74 -40.66 5.49 -343.45 -1.88 -42.55 16 10 C 0.16 6.90 5.95 86.38 0.51 7.41 16 11 C 0.10 3.61 2.73 31.21 0.09 3.69 16 12 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 13 C 0.09 2.37 4.82 87.26 0.42 2.79 16 14 N -0.59 -11.68 2.19 -821.01 -1.80 -13.48 16 15 C 0.55 13.27 7.35 86.88 0.64 13.91 16 16 O -0.57 -19.53 16.40 -3.74 -0.06 -19.59 16 17 C -0.06 -1.12 5.12 -19.89 -0.10 -1.22 16 18 C -0.13 -1.06 7.53 22.62 0.17 -0.89 16 19 C 0.15 1.13 11.17 84.64 0.95 2.08 16 20 N -0.52 -8.63 10.35 -197.08 -2.04 -10.67 16 21 C 0.29 5.97 8.41 84.74 0.71 6.68 16 22 F -0.12 -2.70 17.29 44.97 0.78 -1.92 16 23 C -0.16 -3.24 9.71 22.69 0.22 -3.02 16 24 C 0.09 0.86 4.52 86.38 0.39 1.25 16 25 C -0.16 -2.03 5.78 30.30 0.18 -1.85 16 26 C 0.06 1.49 6.37 71.50 0.46 1.95 16 27 O -0.40 -13.70 9.19 -117.83 -1.08 -14.79 16 28 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.37 22.20 7.53 -92.70 -0.70 21.50 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.34 7.37 -2.38 -0.02 2.33 16 33 H 0.12 2.30 8.11 -2.39 -0.02 2.28 16 34 H 0.19 0.06 5.86 -2.91 -0.02 0.05 16 35 H 0.22 -0.41 8.06 -2.91 -0.02 -0.43 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.10 0.71 5.12 -2.39 -0.01 0.70 16 38 H 0.12 0.24 7.41 -2.39 -0.02 0.22 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 41 H 0.03 0.90 7.40 -2.39 -0.02 0.89 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -83.41 349.57 2.52 -80.89 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.36 Total: 19.43 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.93 Total: 14.95 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.44 Total: -128.61 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.14 Total: -34.38 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -83.41 2.52 -80.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200006536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.279 kcal (2) G-P(sol) polarization free energy of solvation -83.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds