Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47045 * 269.99711 * 3 2 1 5 5 H 1.48499 * 109.47415 * 30.00244 * 3 2 1 6 6 H 1.48503 * 109.47133 * 150.00368 * 3 2 1 7 7 C 1.38810 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 0.02562 * 7 2 1 9 9 N 1.36944 * 120.00381 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99972 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46255 * 59.99874 * 11 10 9 13 13 C 1.55319 * 109.40210 * 180.02562 * 11 10 9 14 14 N 1.45124 * 109.25382 * 187.88748 * 13 11 10 15 15 C 1.34771 * 118.75781 * 90.85507 * 14 13 11 16 16 O 1.21576 * 120.00000 * 189.24758 * 15 14 13 17 17 C 1.47723 * 120.00436 * 9.25094 * 15 14 13 18 18 C 1.40149 * 120.53426 * 127.78907 * 17 15 14 19 19 C 1.38155 * 118.32432 * 180.29590 * 18 17 15 20 20 C 1.38765 * 119.28280 * 359.46318 * 19 18 17 21 21 F 1.35097 * 119.49058 * 180.27540 * 20 19 18 22 22 N 1.32146 * 121.01119 * 0.54996 * 20 19 18 23 23 C 1.31683 * 121.84321 * 359.72747 * 22 20 19 24 24 C 1.47516 * 122.48381 * 270.57560 * 14 13 11 25 25 C 1.53575 * 111.02798 * 41.88016 * 24 14 13 26 26 C 1.51536 * 109.57967 * 39.98171 * 25 24 14 27 27 O 1.38013 * 109.47057 * 300.00335 * 11 10 9 28 28 H 0.96999 * 120.00309 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99059 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47051 * 60.00412 * 10 9 7 31 31 H 1.09000 * 109.47638 * 300.00348 * 10 9 7 32 32 H 1.08995 * 109.51045 * 68.00968 * 13 11 10 33 33 H 1.08995 * 109.69826 * 307.87609 * 13 11 10 34 34 H 1.07996 * 120.84052 * 0.03237 * 18 17 15 35 35 H 1.08000 * 120.35862 * 179.70069 * 19 18 17 36 36 H 1.08003 * 119.70536 * 180.02562 * 23 22 20 37 37 H 1.09000 * 109.16625 * 162.28437 * 24 14 13 38 38 H 1.09007 * 109.16087 * 281.53754 * 24 14 13 39 39 H 1.08999 * 109.44832 * 160.00922 * 25 24 14 40 40 H 1.08994 * 109.45307 * 279.96825 * 25 24 14 41 41 H 1.09000 * 109.59255 * 28.37515 * 26 25 24 42 42 H 1.09005 * 109.58973 * 148.67033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8796 -1.6196 0.8900 13 6 6.3914 -3.5372 -0.0006 14 7 7.8063 -3.2748 0.1874 15 6 8.3014 -3.2563 1.4407 16 8 9.4388 -2.8757 1.6395 17 6 7.4621 -3.6986 2.5731 18 6 7.9323 -4.6644 3.4733 19 6 7.1070 -5.0490 4.5123 20 6 5.8549 -4.4639 4.6367 21 9 5.0466 -4.8328 5.6544 22 7 5.4389 -3.5553 3.7719 23 6 6.1884 -3.1618 2.7632 24 6 8.7242 -3.0336 -0.9419 25 6 8.0754 -2.1229 -1.9946 26 6 7.2898 -1.0270 -1.3032 27 8 5.9498 -1.4674 -1.1268 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3620 -0.0004 30 1 3.8485 -3.0425 -0.8898 31 1 3.8491 -3.0423 0.8902 32 1 6.2396 -4.0442 -0.9535 33 1 6.0288 -4.1703 0.8091 34 1 8.9134 -5.1001 3.3553 35 1 7.4342 -5.7941 5.2222 36 1 5.8140 -2.4165 2.0771 37 1 9.6327 -2.5599 -0.5698 38 1 8.9813 -3.9869 -1.4040 39 1 8.8515 -1.6764 -2.6162 40 1 7.4038 -2.7116 -2.6195 41 1 7.7358 -0.8150 -0.3315 42 1 7.3031 -0.1256 -1.9160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200115282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = -38.523465 kcal Electronic energy + Delta-G solvation = -28318.314465 eV Core-core repulsion = 24214.956064 eV Total energy + Delta-G solvation = -4103.358401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.29181 -41.45422 -39.79880 -38.69975 -35.66663 -35.13936 -33.48629 -33.11394 -31.48031 -31.03102 -29.31672 -27.01090 -25.66311 -24.51032 -24.24307 -22.57714 -21.71894 -21.24331 -19.83672 -18.52096 -18.14240 -17.77627 -17.55419 -16.93495 -16.80825 -16.30919 -15.85076 -15.48897 -14.99329 -14.73172 -14.42421 -14.26755 -14.15260 -13.77183 -13.57138 -13.54410 -13.34173 -13.06076 -12.85867 -12.69097 -12.51837 -12.33236 -12.14739 -11.53312 -11.28836 -10.95516 -10.83939 -10.59617 -10.49748 -10.45273 -10.12736 -9.88357 -9.62456 -9.56162 -9.33862 -8.89239 -8.85967 -7.21200 -5.72975 -3.08537 0.23580 0.69137 2.20475 2.52533 3.16339 3.22295 3.42142 3.46052 3.49411 3.64602 3.93468 4.10631 4.31195 4.46398 4.47086 4.62115 4.64016 4.74853 4.83289 4.87757 4.98755 5.01672 5.21262 5.27586 5.35876 5.39525 5.48593 5.50185 5.52176 5.57522 5.63937 5.77239 5.84735 5.91142 6.10391 6.16573 6.39803 6.53464 6.89830 7.25111 7.64922 7.69904 8.01455 8.45277 9.24263 9.96440 10.15671 11.45286 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.005078 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.997216 B = 5512.630080 C = 7677.319709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.166 3.834 11 C 0.074 3.926 12 H 0.053 0.947 13 C 0.063 3.937 14 N -0.602 5.602 15 C 0.566 3.434 16 O -0.529 6.529 17 C -0.200 4.200 18 C 0.001 3.999 19 C -0.199 4.199 20 C 0.327 3.673 21 F -0.106 7.106 22 N -0.499 5.499 23 C 0.160 3.840 24 C 0.110 3.890 25 C -0.165 4.165 26 C 0.069 3.931 27 O -0.364 6.364 28 H 0.259 0.741 29 H 0.365 0.635 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.186 0.814 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.244 -11.262 2.378 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.038 3.962 11 C 0.014 3.986 12 H 0.070 0.930 13 C -0.061 4.061 14 N -0.334 5.334 15 C 0.353 3.647 16 O -0.405 6.405 17 C -0.206 4.206 18 C -0.025 4.025 19 C -0.220 4.220 20 C 0.174 3.826 21 F -0.084 7.084 22 N -0.213 5.213 23 C 0.002 3.998 24 C -0.011 4.011 25 C -0.204 4.204 26 C -0.008 4.008 27 O -0.282 6.282 28 H 0.069 0.931 29 H 0.198 0.802 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.202 0.798 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.629 -10.783 2.485 23.410 hybrid contribution 1.306 0.678 0.330 1.508 sum 21.935 -10.105 2.815 24.314 Atomic orbital electron populations 1.69696 1.05098 1.25808 1.57550 1.24628 0.95178 0.97156 1.01925 0.86538 0.79136 0.85007 0.77773 1.21031 1.21845 1.20441 1.19018 0.80371 0.94786 1.43068 0.89132 1.42510 1.03974 1.01823 1.91048 1.20673 0.85004 0.90609 0.99926 1.22783 0.97035 0.90307 0.88435 0.93003 1.22892 0.79313 0.99135 1.04770 1.47838 1.09471 1.70206 1.05894 1.18105 0.86351 0.77656 0.82554 1.90797 1.19030 1.46322 1.84398 1.20951 0.97230 1.02842 0.99571 1.21426 0.99059 0.92063 0.89990 1.21791 0.93891 1.04422 1.01935 1.18507 0.86682 0.91871 0.85535 1.91665 1.73042 1.88818 1.54916 1.67201 1.37003 1.13038 1.04017 1.23728 0.87900 0.95825 0.92346 1.21911 0.92980 1.00005 0.86217 1.22490 1.01002 0.98479 0.98393 1.22222 0.82424 0.96278 0.99869 1.86460 1.27559 1.71605 1.42571 0.93078 0.80205 0.94207 0.93663 0.88339 0.89041 0.83002 0.82648 0.79814 0.88763 0.91229 0.89419 0.89785 0.93136 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.53 27.73 -169.99 -4.71 17.81 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.66 5.29 -59.91 -0.32 -17.98 16 10 C 0.17 3.02 5.84 -4.04 -0.02 3.00 16 11 C 0.07 1.07 1.77 -25.50 -0.05 1.03 16 12 H 0.05 0.78 5.70 -51.93 -0.30 0.48 16 13 C 0.06 0.69 4.44 -3.55 -0.02 0.68 16 14 N -0.60 -6.43 2.18 -173.29 -0.38 -6.81 16 15 C 0.57 6.86 7.17 -12.39 -0.09 6.77 16 16 O -0.53 -7.69 16.37 5.30 0.09 -7.60 16 17 C -0.20 -2.27 4.85 -104.83 -0.51 -2.78 16 18 C 0.00 0.01 9.90 -38.90 -0.39 -0.38 16 19 C -0.20 -1.73 10.07 -39.42 -0.40 -2.13 16 20 C 0.33 3.94 8.41 -17.22 -0.14 3.79 16 21 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 22 N -0.50 -7.16 10.36 -13.21 -0.14 -7.30 16 23 C 0.16 2.07 8.73 -17.14 -0.15 1.92 16 24 C 0.11 0.99 6.20 -3.19 -0.02 0.97 16 25 C -0.17 -1.44 5.79 -27.17 -0.16 -1.60 16 26 C 0.07 0.79 6.38 36.42 0.23 1.03 16 27 O -0.36 -5.50 9.18 -26.53 -0.24 -5.74 16 28 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.36 8.62 5.39 -40.82 -0.22 8.40 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.09 0.96 5.47 -51.93 -0.28 0.67 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.19 2.52 3.40 -52.48 -0.18 2.34 16 37 H 0.09 0.91 6.93 -51.93 -0.36 0.55 16 38 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 41 H 0.05 0.61 7.40 -51.93 -0.38 0.22 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -34.60 342.22 -6.80 -41.40 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.11 Total: 5.70 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.96 Total: 5.37 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.06 Total: -60.83 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.16 Total: -13.34 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.60 -6.80 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200115282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.874 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds