Wall clock time and date at job start Tue Mar 31 2020 14:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47045 * 269.99711 * 3 2 1 5 5 H 1.48499 * 109.47415 * 30.00244 * 3 2 1 6 6 H 1.48503 * 109.47133 * 150.00368 * 3 2 1 7 7 C 1.38810 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99976 * 0.02562 * 7 2 1 9 9 N 1.36944 * 120.00381 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99972 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46255 * 59.99874 * 11 10 9 13 13 C 1.55319 * 109.40210 * 180.02562 * 11 10 9 14 14 N 1.45124 * 109.25382 * 187.88748 * 13 11 10 15 15 C 1.34771 * 118.75781 * 90.85507 * 14 13 11 16 16 O 1.21576 * 120.00000 * 189.24758 * 15 14 13 17 17 C 1.47723 * 120.00436 * 9.25094 * 15 14 13 18 18 C 1.40149 * 120.53426 * 127.78907 * 17 15 14 19 19 C 1.38155 * 118.32432 * 180.29590 * 18 17 15 20 20 C 1.38765 * 119.28280 * 359.46318 * 19 18 17 21 21 F 1.35097 * 119.49058 * 180.27540 * 20 19 18 22 22 N 1.32146 * 121.01119 * 0.54996 * 20 19 18 23 23 C 1.31683 * 121.84321 * 359.72747 * 22 20 19 24 24 C 1.47516 * 122.48381 * 270.57560 * 14 13 11 25 25 C 1.53575 * 111.02798 * 41.88016 * 24 14 13 26 26 C 1.51536 * 109.57967 * 39.98171 * 25 24 14 27 27 O 1.38013 * 109.47057 * 300.00335 * 11 10 9 28 28 H 0.96999 * 120.00309 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99059 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47051 * 60.00412 * 10 9 7 31 31 H 1.09000 * 109.47638 * 300.00348 * 10 9 7 32 32 H 1.08995 * 109.51045 * 68.00968 * 13 11 10 33 33 H 1.08995 * 109.69826 * 307.87609 * 13 11 10 34 34 H 1.07996 * 120.84052 * 0.03237 * 18 17 15 35 35 H 1.08000 * 120.35862 * 179.70069 * 19 18 17 36 36 H 1.08003 * 119.70536 * 180.02562 * 23 22 20 37 37 H 1.09000 * 109.16625 * 162.28437 * 24 14 13 38 38 H 1.09007 * 109.16087 * 281.53754 * 24 14 13 39 39 H 1.08999 * 109.44832 * 160.00922 * 25 24 14 40 40 H 1.08994 * 109.45307 * 279.96825 * 25 24 14 41 41 H 1.09000 * 109.59255 * 28.37515 * 26 25 24 42 42 H 1.09005 * 109.58973 * 148.67033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8796 -1.6196 0.8900 13 6 6.3914 -3.5372 -0.0006 14 7 7.8063 -3.2748 0.1874 15 6 8.3014 -3.2563 1.4407 16 8 9.4388 -2.8757 1.6395 17 6 7.4621 -3.6986 2.5731 18 6 7.9323 -4.6644 3.4733 19 6 7.1070 -5.0490 4.5123 20 6 5.8549 -4.4639 4.6367 21 9 5.0466 -4.8328 5.6544 22 7 5.4389 -3.5553 3.7719 23 6 6.1884 -3.1618 2.7632 24 6 8.7242 -3.0336 -0.9419 25 6 8.0754 -2.1229 -1.9946 26 6 7.2898 -1.0270 -1.3032 27 8 5.9498 -1.4674 -1.1268 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3620 -0.0004 30 1 3.8485 -3.0425 -0.8898 31 1 3.8491 -3.0423 0.8902 32 1 6.2396 -4.0442 -0.9535 33 1 6.0288 -4.1703 0.8091 34 1 8.9134 -5.1001 3.3553 35 1 7.4342 -5.7941 5.2222 36 1 5.8140 -2.4165 2.0771 37 1 9.6327 -2.5599 -0.5698 38 1 8.9813 -3.9869 -1.4040 39 1 8.8515 -1.6764 -2.6162 40 1 7.4038 -2.7116 -2.6195 41 1 7.7358 -0.8150 -0.3315 42 1 7.3031 -0.1256 -1.9160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200115282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:01 Heat of formation + Delta-G solvation = -63.216668 kcal Electronic energy + Delta-G solvation = -28319.385243 eV Core-core repulsion = 24214.956064 eV Total energy + Delta-G solvation = -4104.429179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.19618 -42.37223 -40.72384 -39.73412 -36.90518 -36.45951 -34.77093 -33.99795 -33.23219 -32.04188 -30.61929 -27.98492 -26.97919 -25.44661 -25.17497 -24.16114 -22.88133 -22.38794 -20.70840 -19.79724 -19.41261 -19.04187 -18.52410 -17.88262 -17.78973 -17.22300 -16.88508 -16.67945 -16.28514 -16.03821 -15.61786 -15.25110 -15.09812 -15.04749 -14.78071 -14.46338 -14.40058 -14.28496 -14.13327 -13.89273 -13.75252 -13.51345 -13.30556 -12.86866 -12.77953 -12.43060 -12.13302 -11.95453 -11.80710 -11.55366 -11.49946 -11.28347 -11.00434 -10.79797 -10.60302 -10.20253 -9.80305 -9.28936 -8.01023 -5.33544 -0.62884 -0.09782 1.28431 1.37652 1.40756 1.47445 1.67966 2.29629 2.36507 2.49339 2.59835 3.04770 3.23977 3.31564 3.42054 3.52684 3.71148 3.79271 3.83714 3.92942 3.97497 4.11350 4.17673 4.24654 4.29367 4.43477 4.46833 4.61376 4.63947 4.72769 4.74900 4.83151 4.85444 5.04468 5.05984 5.18896 5.30741 5.35909 5.76540 6.00484 6.22241 6.36883 6.61237 6.78765 7.09282 7.84851 8.03278 9.20508 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.005078 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.997216 B = 5512.630080 C = 7677.319709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.258 1.258 7 C -0.229 4.229 8 H 0.061 0.939 9 N -0.752 5.752 10 C 0.162 3.838 11 C 0.085 3.915 12 H 0.046 0.954 13 C 0.076 3.924 14 N -0.596 5.596 15 C 0.569 3.431 16 O -0.554 6.554 17 C -0.202 4.202 18 C 0.009 3.991 19 C -0.172 4.172 20 C 0.306 3.694 21 F -0.114 7.114 22 N -0.541 5.541 23 C 0.147 3.853 24 C 0.108 3.892 25 C -0.155 4.155 26 C 0.063 3.937 27 O -0.390 6.390 28 H 0.257 0.743 29 H 0.366 0.634 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.171 0.829 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.634 -12.237 2.111 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.252 4.252 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.183 1.183 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.398 5.398 10 C 0.036 3.964 11 C 0.025 3.975 12 H 0.063 0.937 13 C -0.048 4.048 14 N -0.327 5.327 15 C 0.356 3.644 16 O -0.433 6.433 17 C -0.207 4.207 18 C -0.016 4.016 19 C -0.193 4.193 20 C 0.153 3.847 21 F -0.093 7.093 22 N -0.255 5.255 23 C -0.010 4.010 24 C -0.013 4.013 25 C -0.193 4.193 26 C -0.013 4.013 27 O -0.309 6.309 28 H 0.066 0.934 29 H 0.199 0.801 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.200 0.800 35 H 0.212 0.788 36 H 0.188 0.812 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 24.071 -11.791 2.202 26.894 hybrid contribution 0.267 0.884 0.416 1.013 sum 24.339 -10.907 2.618 26.799 Atomic orbital electron populations 1.69868 1.07000 1.26568 1.59925 1.25412 0.96019 1.00978 1.02800 0.85453 0.78423 0.80089 0.78065 1.20345 1.22295 1.18326 1.19032 0.82487 0.93597 1.40909 0.92100 1.42524 1.02461 1.03915 1.90860 1.20802 0.87517 0.88350 0.99763 1.22503 0.94612 0.92207 0.88184 0.93677 1.22693 0.79151 0.97052 1.05918 1.47874 1.09314 1.69418 1.06127 1.18179 0.85979 0.77214 0.82986 1.90790 1.20098 1.47635 1.84764 1.20977 0.96409 1.03360 0.99969 1.21815 1.00051 0.90867 0.88884 1.22125 0.91783 1.03576 1.01800 1.18840 0.87946 0.92439 0.85439 1.91642 1.73567 1.88905 1.55206 1.67028 1.38588 1.14693 1.05198 1.23452 0.88731 0.96402 0.92411 1.22091 0.92286 1.01246 0.85663 1.22423 1.01234 0.97475 0.98188 1.22438 0.81106 0.97775 0.99996 1.86391 1.29848 1.72095 1.42536 0.93380 0.80089 0.94104 0.93475 0.86690 0.88466 0.79957 0.78764 0.81236 0.89248 0.88910 0.86805 0.89746 0.93932 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.04 13.97 21.65 0.30 -63.73 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.95 47.06 27.73 68.60 1.90 48.97 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 7 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 9 N -0.75 -35.70 5.29 -343.46 -1.82 -37.52 16 10 C 0.16 5.92 5.84 86.38 0.50 6.43 16 11 C 0.08 2.38 1.77 31.39 0.06 2.43 16 12 H 0.05 1.35 5.70 -2.39 -0.01 1.34 16 13 C 0.08 1.54 4.44 87.43 0.39 1.93 16 14 N -0.60 -11.37 2.18 -820.43 -1.79 -13.16 16 15 C 0.57 12.62 7.17 86.75 0.62 13.24 16 16 O -0.55 -14.98 16.37 -3.96 -0.06 -15.04 16 17 C -0.20 -4.20 4.85 -20.00 -0.10 -4.30 16 18 C 0.01 0.14 9.90 22.71 0.22 0.37 16 19 C -0.17 -2.48 10.07 22.38 0.23 -2.25 16 20 C 0.31 7.07 8.41 84.77 0.71 7.78 16 21 F -0.11 -2.78 17.29 44.97 0.78 -2.01 16 22 N -0.54 -15.59 10.36 -195.72 -2.03 -17.61 16 23 C 0.15 3.77 8.73 85.02 0.74 4.51 16 24 C 0.11 1.61 6.20 86.38 0.54 2.15 16 25 C -0.16 -2.24 5.79 30.31 0.18 -2.06 16 26 C 0.06 1.33 6.38 71.50 0.46 1.79 16 27 O -0.39 -11.25 9.18 -117.83 -1.08 -12.33 16 28 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 29 H 0.37 17.09 5.39 -92.71 -0.50 16.59 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.72 8.11 -2.39 -0.02 1.70 16 32 H 0.11 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.10 1.89 5.47 -2.39 -0.01 1.88 16 34 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 4.71 3.40 -2.91 -0.01 4.70 16 37 H 0.09 1.49 6.93 -2.39 -0.02 1.47 16 38 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 41 H 0.04 0.96 7.40 -2.39 -0.02 0.95 16 42 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -77.28 342.22 2.61 -74.66 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.51 Total: 21.36 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.89 Total: 16.41 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -5.33 Total: -132.02 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.15 Total: -27.38 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.97 kcal Total: -77.28 2.61 -74.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200115282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds