Wall clock time and date at job start Tue Mar 31 2020 14:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99465 * 2 1 4 4 H 1.48501 * 109.47027 * 239.99909 * 3 2 1 5 5 H 1.48496 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00365 * 3 2 1 7 7 C 1.38816 * 120.00656 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99896 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99934 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47107 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47053 * 304.99241 * 11 10 9 13 13 C 1.54806 * 109.46975 * 184.99704 * 11 10 9 14 14 N 1.45123 * 109.53186 * 172.10250 * 13 11 10 15 15 C 1.34774 * 118.75945 * 269.29181 * 14 13 11 16 16 O 1.21530 * 119.99802 * 5.58928 * 15 14 13 17 17 C 1.47999 * 119.99939 * 185.58425 * 15 14 13 18 18 C 1.39901 * 120.94235 * 45.18250 * 17 15 14 19 19 C 1.38035 * 119.03336 * 180.02562 * 18 17 15 20 20 N 1.31859 * 120.98459 * 0.02562 * 19 18 17 21 21 C 1.31732 * 122.09259 * 359.72727 * 20 19 18 22 22 C 1.38529 * 120.84363 * 0.53857 * 21 20 19 23 23 F 1.35098 * 120.53493 * 179.75445 * 22 21 20 24 24 C 1.47509 * 122.48219 * 89.57126 * 14 13 11 25 25 C 1.53941 * 110.82065 * 317.97720 * 24 14 13 26 26 C 1.51533 * 109.72900 * 320.30258 * 25 24 14 27 27 O 1.38009 * 109.47244 * 64.98637 * 11 10 9 28 28 H 0.96993 * 120.00528 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00428 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47372 * 59.99548 * 10 9 7 31 31 H 1.08997 * 109.46959 * 300.00128 * 10 9 7 32 32 H 1.09000 * 109.46261 * 52.08518 * 13 11 10 33 33 H 1.09000 * 109.45117 * 292.11860 * 13 11 10 34 34 H 1.08004 * 120.48318 * 0.04864 * 18 17 15 35 35 H 1.08003 * 119.51142 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.57338 * 180.28707 * 21 20 19 37 37 H 1.09006 * 109.16916 * 78.49541 * 24 14 13 38 38 H 1.08999 * 109.16592 * 197.69320 * 24 14 13 39 39 H 1.09008 * 109.46199 * 200.17603 * 25 24 14 40 40 H 1.09005 * 109.29986 * 80.33703 * 25 24 14 41 41 H 1.09001 * 109.59035 * 331.51508 * 26 25 24 42 42 H 1.08999 * 109.59179 * 211.07511 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0642 -4.8196 0.0001 12 1 0.3805 -4.7126 0.8423 13 6 1.8342 -6.1566 0.1272 14 7 0.8912 -7.2435 0.3156 15 6 0.5444 -7.5909 1.5707 16 8 0.9388 -6.9339 2.5140 17 6 -0.3169 -8.7724 1.8003 18 6 -0.0769 -9.9781 1.1326 19 6 -0.9053 -11.0551 1.3761 20 7 -1.9114 -10.9598 2.2231 21 6 -2.1722 -9.8467 2.8776 22 6 -1.3962 -8.7145 2.6909 23 9 -1.6723 -7.5748 3.3616 24 6 0.3027 -7.9865 -0.8147 25 6 -0.0938 -7.0281 -1.9523 26 6 -0.6923 -5.7634 -1.3705 27 8 0.3466 -4.8121 -1.1787 28 1 -0.4850 0.8399 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 2.6851 -3.7144 0.8894 31 1 2.6850 -3.7144 -0.8905 32 1 2.5077 -6.1078 0.9828 33 1 2.4122 -6.3303 -0.7804 34 1 0.7448 -10.0652 0.4371 35 1 -0.7268 -11.9898 0.8652 36 1 -3.0042 -9.8154 3.5655 37 1 1.0305 -8.7077 -1.1868 38 1 -0.5836 -8.5192 -0.4701 39 1 -0.8267 -7.5132 -2.5971 40 1 0.7917 -6.7757 -2.5358 41 1 -1.1628 -5.9885 -0.4134 42 1 -1.4346 -5.3599 -2.0592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200172083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:41 Heat of formation + Delta-G solvation = -53.530575 kcal Electronic energy + Delta-G solvation = -27909.873154 eV Core-core repulsion = 23805.863995 eV Total energy + Delta-G solvation = -4104.009159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.31627 -41.22882 -40.00472 -38.47144 -35.86358 -34.63276 -33.32079 -32.80278 -31.42224 -30.92753 -28.96592 -26.87331 -25.95542 -24.55285 -23.92204 -22.67471 -21.80346 -20.99305 -20.08178 -18.25056 -17.84674 -17.71191 -17.15597 -16.67796 -16.50558 -16.15387 -16.07066 -15.63154 -14.93064 -14.75849 -14.70382 -14.32395 -14.00363 -13.93768 -13.81540 -13.65303 -13.11410 -13.08570 -12.74355 -12.60562 -12.32747 -12.08809 -11.79416 -11.47688 -11.04027 -10.82400 -10.74713 -10.67445 -10.34218 -10.26673 -10.04720 -9.90006 -9.65778 -9.50802 -9.47721 -8.81026 -8.70842 -6.83369 -5.67347 -2.95832 0.16673 0.35995 2.27507 2.57508 3.09501 3.46862 3.49955 3.53430 3.55054 3.75954 3.88728 3.92858 4.13972 4.24102 4.45881 4.57970 4.66823 4.79755 4.82972 4.97601 5.13858 5.17234 5.24123 5.26529 5.27309 5.36501 5.40339 5.53405 5.65126 5.76948 5.88806 5.93255 5.98510 6.05826 6.32977 6.34418 6.65463 6.77651 6.93075 7.21648 7.75510 7.76972 7.96570 8.50688 9.62068 10.20114 10.55942 11.55537 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.003041 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.979490 B = 9206.784583 C = 9715.406621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.167 3.833 11 C 0.088 3.912 12 H 0.054 0.946 13 C 0.082 3.918 14 N -0.599 5.599 15 C 0.550 3.450 16 O -0.505 6.505 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.084 3.916 20 N -0.444 5.444 21 C 0.076 3.924 22 C 0.098 3.902 23 F -0.109 7.109 24 C 0.100 3.900 25 C -0.166 4.166 26 C 0.073 3.927 27 O -0.367 6.367 28 H 0.255 0.745 29 H 0.387 0.613 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -27.153 -1.531 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.039 3.961 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.041 4.041 14 N -0.332 5.332 15 C 0.335 3.665 16 O -0.379 6.379 17 C -0.129 4.129 18 C -0.135 4.135 19 C -0.072 4.072 20 N -0.152 5.152 21 C -0.083 4.083 22 C 0.075 3.925 23 F -0.087 7.087 24 C -0.022 4.022 25 C -0.204 4.204 26 C -0.004 4.004 27 O -0.285 6.285 28 H 0.065 0.935 29 H 0.221 0.779 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.193 0.807 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.996 -27.209 -1.023 27.393 hybrid contribution 0.553 1.527 0.124 1.629 sum -2.443 -25.682 -0.899 25.814 Atomic orbital electron populations 1.69663 1.05117 1.25629 1.57707 1.24740 0.95512 0.97637 1.03121 0.86254 0.78481 0.83567 0.77799 1.21304 1.21729 1.21293 1.19181 0.90967 0.84123 1.42697 0.91215 1.42215 1.06008 0.99488 1.89296 1.20601 0.92345 0.84638 0.98562 1.22286 0.93819 0.93824 0.87298 0.92814 1.22530 0.91770 0.86149 1.03689 1.47828 1.45056 1.35054 1.05227 1.18121 0.80929 0.83689 0.83711 1.90893 1.53419 1.52116 1.41457 1.20592 0.96848 0.96723 0.98741 1.22407 1.00755 0.91655 0.98705 1.22829 0.90519 0.98767 0.95109 1.67613 1.17177 1.25046 1.05404 1.23009 0.99504 0.86619 0.99216 1.18907 0.95647 0.84670 0.93254 1.91636 1.92514 1.47305 1.77286 1.22314 0.98407 0.94358 0.87109 1.22583 1.03105 0.97043 0.97717 1.22112 0.90002 0.88434 0.99867 1.86445 1.47952 1.55536 1.38540 0.93541 0.77936 0.94756 0.95441 0.88659 0.89316 0.83029 0.81190 0.80708 0.90933 0.89983 0.89509 0.89667 0.93703 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.06 55.49 0.72 -28.66 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.13 29.55 -169.99 -5.02 18.10 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.68 5.54 -59.91 -0.33 -20.01 16 10 C 0.17 3.57 5.92 -4.04 -0.02 3.55 16 11 C 0.09 1.58 2.68 -25.78 -0.07 1.51 16 12 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 13 C 0.08 1.13 4.82 -3.83 -0.02 1.11 16 14 N -0.60 -7.11 2.18 -173.30 -0.38 -7.49 16 15 C 0.55 7.56 7.08 -12.26 -0.09 7.47 16 16 O -0.50 -9.17 16.08 5.34 0.09 -9.08 16 17 C -0.12 -1.24 4.80 -104.60 -0.50 -1.74 16 18 C -0.11 -0.78 7.70 -39.03 -0.30 -1.08 16 19 C 0.08 0.51 11.17 -17.61 -0.20 0.31 16 20 N -0.44 -3.67 10.33 -13.25 -0.14 -3.81 16 21 C 0.08 0.65 11.17 -17.49 -0.20 0.45 16 22 C 0.10 1.08 7.30 -38.80 -0.28 0.80 16 23 F -0.11 -1.50 16.55 2.25 0.04 -1.47 16 24 C 0.10 0.80 4.76 -3.00 -0.01 0.79 16 25 C -0.17 -1.49 5.79 -26.98 -0.16 -1.65 16 26 C 0.07 0.96 6.38 36.42 0.23 1.19 16 27 O -0.37 -6.51 9.38 -26.51 -0.25 -6.76 16 28 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.39 11.19 7.65 -40.82 -0.31 10.88 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.40 7.36 -51.93 -0.38 1.01 16 33 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.15 0.65 6.78 -52.48 -0.36 0.29 16 35 H 0.17 0.47 8.06 -52.48 -0.42 0.04 16 36 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.07 0.40 7.69 -51.93 -0.40 0.00 16 38 H 0.08 0.57 5.45 -51.93 -0.28 0.29 16 39 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 41 H 0.04 0.62 7.41 -51.93 -0.38 0.23 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -36.67 350.48 -7.31 -43.98 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.46 Total: 4.84 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.86 Total: 5.06 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.12 Total: -59.96 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.16 Total: -15.84 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.67 -7.31 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200172083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.548 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds