Wall clock time and date at job start Tue Mar 31 2020 14:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47147 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47091 * 120.00058 * 3 2 1 6 6 H 1.48499 * 109.47339 * 239.99603 * 3 2 1 7 7 C 1.38810 * 120.00030 * 180.27642 * 2 1 3 8 8 H 1.08003 * 120.00324 * 179.72842 * 7 2 1 9 9 N 1.36943 * 120.00193 * 359.72304 * 7 2 1 10 10 C 1.46495 * 119.99901 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46715 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46693 * 60.00071 * 11 10 9 13 13 C 1.54807 * 109.46769 * 179.97438 * 11 10 9 14 14 N 1.45123 * 109.53791 * 187.89298 * 13 11 10 15 15 C 1.34770 * 118.76244 * 90.71054 * 14 13 11 16 16 O 1.21528 * 120.00161 * 173.61956 * 15 14 13 17 17 C 1.48005 * 119.99627 * 353.61473 * 15 14 13 18 18 C 1.39896 * 120.94377 * 290.97530 * 17 15 14 19 19 C 1.38037 * 119.03811 * 179.77587 * 18 17 15 20 20 N 1.31869 * 120.97528 * 0.51848 * 19 18 17 21 21 C 1.31719 * 122.09500 * 359.73132 * 20 19 18 22 22 C 1.38534 * 120.84887 * 0.02562 * 21 20 19 23 23 F 1.35101 * 120.53511 * 179.97438 * 22 21 20 24 24 C 1.47512 * 122.48322 * 270.70986 * 14 13 11 25 25 C 1.53582 * 111.02596 * 41.62463 * 24 14 13 26 26 C 1.51539 * 109.57778 * 39.98034 * 25 24 14 27 27 O 1.38016 * 109.47358 * 299.99956 * 11 10 9 28 28 H 0.97000 * 119.99419 * 179.97438 * 1 2 3 29 29 H 0.96995 * 119.99823 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47392 * 299.99922 * 10 9 7 31 31 H 1.09006 * 109.47254 * 60.00490 * 10 9 7 32 32 H 1.09003 * 109.46091 * 307.90865 * 13 11 10 33 33 H 1.08995 * 109.46404 * 67.86909 * 13 11 10 34 34 H 1.07998 * 120.48087 * 0.02562 * 18 17 15 35 35 H 1.07998 * 119.51785 * 180.27487 * 19 18 17 36 36 H 1.08006 * 119.57298 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.16724 * 281.23151 * 24 14 13 38 38 H 1.08997 * 109.12541 * 161.99620 * 24 14 13 39 39 H 1.09002 * 109.45076 * 279.94500 * 25 24 14 40 40 H 1.08995 * 109.43036 * 160.00161 * 25 24 14 41 41 H 1.08999 * 109.58330 * 148.81993 * 26 25 24 42 42 H 1.08993 * 109.58923 * 28.38198 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6567 -0.0125 11 6 1.0639 -4.8197 -0.0116 12 1 0.4336 -4.7593 -0.8988 13 6 1.8380 -6.1603 -0.0194 14 7 0.9066 -7.2574 -0.2064 15 6 0.6368 -7.6724 -1.4599 16 8 -0.0471 -8.6609 -1.6387 17 6 1.1733 -6.9241 -2.6187 18 6 0.7030 -5.6434 -2.9282 19 6 1.2344 -4.9791 -4.0152 20 7 2.1647 -5.5383 -4.7640 21 6 2.6338 -6.7434 -4.5137 22 6 2.1615 -7.4807 -3.4401 23 9 2.6468 -8.7164 -3.1895 24 6 0.2442 -7.9356 0.9237 25 6 -0.2152 -6.9219 1.9821 26 6 -0.7748 -5.6913 1.2974 27 8 0.2751 -4.7498 1.1188 28 1 -0.4849 -0.8401 -0.0004 29 1 0.3557 -2.3881 -0.0021 30 1 2.6807 -3.7121 -0.9055 31 1 2.6888 -3.7168 0.8746 32 1 2.5627 -6.1565 -0.8335 33 1 2.3592 -6.2842 0.9299 34 1 -0.0618 -5.1796 -2.3229 35 1 0.8802 -3.9883 -4.2585 36 1 3.3964 -7.1621 -5.1537 37 1 0.9430 -8.6370 1.3796 38 1 -0.6222 -8.4835 0.5532 39 1 0.6333 -6.6370 2.6042 40 1 -0.9871 -7.3731 2.6054 41 1 -1.5573 -5.2527 1.9166 42 1 -1.1860 -5.9683 0.3268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200172084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:44 Heat of formation + Delta-G solvation = -52.265244 kcal Electronic energy + Delta-G solvation = -28623.008394 eV Core-core repulsion = 24519.054104 eV Total energy + Delta-G solvation = -4103.954290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.30531 -41.23340 -39.84649 -38.71086 -35.64592 -35.12108 -33.75619 -32.53719 -31.26495 -30.98455 -28.82178 -27.04157 -25.56556 -24.58983 -23.89070 -22.84565 -21.84855 -21.24725 -19.90207 -18.20287 -17.78936 -17.68455 -17.43448 -17.05147 -16.65366 -16.06999 -15.93644 -15.86895 -15.01479 -14.85139 -14.50129 -14.19328 -13.93113 -13.87192 -13.71709 -13.66781 -13.52692 -13.18662 -12.83180 -12.66198 -12.34372 -12.33921 -11.91700 -11.50335 -11.10643 -10.77294 -10.71656 -10.61995 -10.34053 -10.20058 -9.99676 -9.89175 -9.54727 -9.29583 -9.22928 -8.91832 -8.81815 -7.02337 -6.10879 -3.10743 0.43820 0.60038 2.11634 2.52010 3.28766 3.51677 3.54882 3.60405 3.70511 3.72532 3.84901 4.13015 4.35405 4.48913 4.51040 4.61707 4.70616 4.78619 4.90983 4.92040 5.02220 5.17233 5.23707 5.27380 5.36878 5.45368 5.50441 5.55777 5.59089 5.60542 5.70252 5.82784 5.92900 5.97977 6.13865 6.22687 6.38025 6.54130 6.88749 7.48445 7.65244 7.73274 7.79339 8.75854 9.21386 10.08005 10.22895 11.37640 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.004522 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.663083 B = 6190.015101 C = 7836.207771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.042 4.042 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.734 5.734 10 C 0.172 3.828 11 C 0.076 3.924 12 H 0.056 0.944 13 C 0.071 3.929 14 N -0.597 5.597 15 C 0.561 3.439 16 O -0.521 6.521 17 C -0.114 4.114 18 C -0.112 4.112 19 C 0.104 3.896 20 N -0.443 5.443 21 C 0.079 3.921 22 C 0.079 3.921 23 F -0.121 7.121 24 C 0.111 3.889 25 C -0.166 4.166 26 C 0.071 3.929 27 O -0.365 6.365 28 H 0.255 0.745 29 H 0.371 0.629 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -16.988 -2.640 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.240 4.240 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.380 5.380 10 C 0.043 3.957 11 C 0.016 3.984 12 H 0.073 0.927 13 C -0.053 4.053 14 N -0.330 5.330 15 C 0.347 3.653 16 O -0.396 6.396 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.052 4.052 20 N -0.151 5.151 21 C -0.080 4.080 22 C 0.056 3.944 23 F -0.100 7.100 24 C -0.010 4.010 25 C -0.204 4.204 26 C -0.005 4.005 27 O -0.283 6.283 28 H 0.066 0.934 29 H 0.204 0.796 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.191 0.809 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.109 -15.315 -3.256 15.798 hybrid contribution -0.259 -2.678 0.709 2.782 sum 1.850 -17.993 -2.547 18.266 Atomic orbital electron populations 1.70878 1.06036 1.28444 1.53394 1.25737 0.97030 1.00881 1.00342 0.83261 0.74244 0.75666 0.75867 1.21039 1.22304 1.22235 1.19997 0.91950 0.85703 1.48667 0.91836 1.42165 1.04984 1.00278 1.90577 1.20534 0.92157 0.84246 0.98726 1.22661 0.92852 0.94036 0.88805 0.92690 1.22648 0.92138 0.86418 1.04116 1.47858 1.44591 1.34922 1.05589 1.18154 0.80443 0.83813 0.82845 1.90807 1.38551 1.24999 1.85288 1.20376 0.98364 0.96271 0.97606 1.22429 1.00589 0.91800 0.98341 1.22951 0.91728 1.00329 0.90206 1.67660 1.09678 1.09530 1.28269 1.22971 0.99771 0.90661 0.94614 1.18781 0.96105 0.82207 0.97281 1.91557 1.86199 1.38556 1.93650 1.21914 0.98239 0.94613 0.86234 1.22510 1.02837 0.96725 0.98328 1.22182 0.89742 0.88989 0.99605 1.86463 1.44848 1.54390 1.42600 0.93355 0.79595 0.94971 0.95369 0.89762 0.88693 0.82864 0.80661 0.80904 0.91189 0.89003 0.89858 0.89321 0.88868 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 3 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.33 -9.14 9.99 -15.06 -0.15 -9.29 16 8 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.73 -17.81 5.49 -59.91 -0.33 -18.14 16 10 C 0.17 3.25 5.95 -4.04 -0.02 3.23 16 11 C 0.08 1.15 2.40 -25.78 -0.06 1.09 16 12 H 0.06 0.82 4.35 -51.93 -0.23 0.60 16 13 C 0.07 0.88 4.52 -3.83 -0.02 0.86 16 14 N -0.60 -7.34 2.19 -173.52 -0.38 -7.72 16 15 C 0.56 7.88 6.83 -12.26 -0.08 7.79 16 16 O -0.52 -8.70 16.46 5.34 0.09 -8.62 16 17 C -0.11 -1.47 3.90 -104.60 -0.41 -1.88 16 18 C -0.11 -1.35 8.14 -39.03 -0.32 -1.66 16 19 C 0.10 1.23 11.17 -17.61 -0.20 1.03 16 20 N -0.44 -5.42 10.33 -13.24 -0.14 -5.56 16 21 C 0.08 0.86 11.17 -17.49 -0.20 0.66 16 22 C 0.08 0.96 7.34 -38.80 -0.28 0.68 16 23 F -0.12 -1.56 16.92 2.25 0.04 -1.52 16 24 C 0.11 1.17 6.12 -3.19 -0.02 1.15 16 25 C -0.17 -1.62 5.79 -27.17 -0.16 -1.78 16 26 C 0.07 0.88 6.37 36.42 0.23 1.11 16 27 O -0.37 -5.84 9.19 -26.54 -0.24 -6.08 16 28 H 0.26 7.63 6.77 -40.82 -0.28 7.35 16 29 H 0.37 9.32 6.36 -40.82 -0.26 9.07 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.01 6.85 -51.93 -0.36 0.65 16 33 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 34 H 0.15 1.80 5.86 -52.49 -0.31 1.50 16 35 H 0.18 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.02 7.07 -51.93 -0.37 0.65 16 39 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -33.86 346.15 -7.03 -40.90 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.18 Total: 7.26 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.78 Total: 1.70 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.09 Total: -59.22 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.16 Total: -14.70 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.86 -7.03 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200172084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.370 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds