Wall clock time and date at job start Tue Mar 31 2020 14:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47147 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47091 * 120.00058 * 3 2 1 6 6 H 1.48499 * 109.47339 * 239.99603 * 3 2 1 7 7 C 1.38810 * 120.00030 * 180.27642 * 2 1 3 8 8 H 1.08003 * 120.00324 * 179.72842 * 7 2 1 9 9 N 1.36943 * 120.00193 * 359.72304 * 7 2 1 10 10 C 1.46495 * 119.99901 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46715 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46693 * 60.00071 * 11 10 9 13 13 C 1.54807 * 109.46769 * 179.97438 * 11 10 9 14 14 N 1.45123 * 109.53791 * 187.89298 * 13 11 10 15 15 C 1.34770 * 118.76244 * 90.71054 * 14 13 11 16 16 O 1.21528 * 120.00161 * 173.61956 * 15 14 13 17 17 C 1.48005 * 119.99627 * 353.61473 * 15 14 13 18 18 C 1.39896 * 120.94377 * 290.97530 * 17 15 14 19 19 C 1.38037 * 119.03811 * 179.77587 * 18 17 15 20 20 N 1.31869 * 120.97528 * 0.51848 * 19 18 17 21 21 C 1.31719 * 122.09500 * 359.73132 * 20 19 18 22 22 C 1.38534 * 120.84887 * 0.02562 * 21 20 19 23 23 F 1.35101 * 120.53511 * 179.97438 * 22 21 20 24 24 C 1.47512 * 122.48322 * 270.70986 * 14 13 11 25 25 C 1.53582 * 111.02596 * 41.62463 * 24 14 13 26 26 C 1.51539 * 109.57778 * 39.98034 * 25 24 14 27 27 O 1.38016 * 109.47358 * 299.99956 * 11 10 9 28 28 H 0.97000 * 119.99419 * 179.97438 * 1 2 3 29 29 H 0.96995 * 119.99823 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47392 * 299.99922 * 10 9 7 31 31 H 1.09006 * 109.47254 * 60.00490 * 10 9 7 32 32 H 1.09003 * 109.46091 * 307.90865 * 13 11 10 33 33 H 1.08995 * 109.46404 * 67.86909 * 13 11 10 34 34 H 1.07998 * 120.48087 * 0.02562 * 18 17 15 35 35 H 1.07998 * 119.51785 * 180.27487 * 19 18 17 36 36 H 1.08006 * 119.57298 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.16724 * 281.23151 * 24 14 13 38 38 H 1.08997 * 109.12541 * 161.99620 * 24 14 13 39 39 H 1.09002 * 109.45076 * 279.94500 * 25 24 14 40 40 H 1.08995 * 109.43036 * 160.00161 * 25 24 14 41 41 H 1.08999 * 109.58330 * 148.81993 * 26 25 24 42 42 H 1.08993 * 109.58923 * 28.38198 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0058 10 6 2.0581 -3.6567 -0.0125 11 6 1.0639 -4.8197 -0.0116 12 1 0.4336 -4.7593 -0.8988 13 6 1.8380 -6.1603 -0.0194 14 7 0.9066 -7.2574 -0.2064 15 6 0.6368 -7.6724 -1.4599 16 8 -0.0471 -8.6609 -1.6387 17 6 1.1733 -6.9241 -2.6187 18 6 0.7030 -5.6434 -2.9282 19 6 1.2344 -4.9791 -4.0152 20 7 2.1647 -5.5383 -4.7640 21 6 2.6338 -6.7434 -4.5137 22 6 2.1615 -7.4807 -3.4401 23 9 2.6468 -8.7164 -3.1895 24 6 0.2442 -7.9356 0.9237 25 6 -0.2152 -6.9219 1.9821 26 6 -0.7748 -5.6913 1.2974 27 8 0.2751 -4.7498 1.1188 28 1 -0.4849 -0.8401 -0.0004 29 1 0.3557 -2.3881 -0.0021 30 1 2.6807 -3.7121 -0.9055 31 1 2.6888 -3.7168 0.8746 32 1 2.5627 -6.1565 -0.8335 33 1 2.3592 -6.2842 0.9299 34 1 -0.0618 -5.1796 -2.3229 35 1 0.8802 -3.9883 -4.2585 36 1 3.3964 -7.1621 -5.1537 37 1 0.9430 -8.6370 1.3796 38 1 -0.6222 -8.4835 0.5532 39 1 0.6333 -6.6370 2.6042 40 1 -0.9871 -7.3731 2.6054 41 1 -1.5573 -5.2527 1.9166 42 1 -1.1860 -5.9683 0.3268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200172084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:43 Heat of formation + Delta-G solvation = -74.864117 kcal Electronic energy + Delta-G solvation = -28623.988354 eV Core-core repulsion = 24519.054104 eV Total energy + Delta-G solvation = -4104.934250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.27351 -42.26980 -40.82848 -39.86872 -37.01633 -36.52584 -35.00560 -33.70488 -32.61324 -32.13146 -30.22225 -28.05888 -26.93300 -25.78006 -24.98354 -24.50595 -22.96580 -22.40274 -20.89058 -19.40429 -19.18328 -18.80050 -18.65887 -18.15534 -17.74966 -17.23668 -17.07539 -16.95542 -16.24945 -15.91316 -15.69611 -15.47942 -15.43084 -14.97954 -14.93996 -14.82392 -14.65467 -14.56394 -14.07370 -13.80271 -13.49184 -13.28071 -13.06904 -12.70988 -12.55952 -12.46185 -12.11497 -11.86121 -11.79445 -11.50863 -11.23648 -11.16668 -10.92041 -10.88778 -10.58421 -10.21833 -9.92078 -9.05944 -8.33449 -5.27173 -0.53629 -0.30939 1.04149 1.53259 1.62858 1.72112 1.88288 2.35781 2.58414 2.67171 2.73438 2.84847 3.26284 3.41650 3.45602 3.46983 3.58559 3.70527 3.77851 3.85660 3.93587 4.11344 4.18920 4.20253 4.27168 4.36865 4.37281 4.46453 4.55538 4.62804 4.67725 4.71192 4.78974 4.95898 5.00850 5.09731 5.21113 5.32066 5.62634 5.85089 6.55753 6.56697 6.58123 6.63169 7.14481 8.04991 8.16097 9.18422 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.004522 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.663083 B = 6190.015101 C = 7836.207771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.100 4.100 3 Si 1.125 2.875 4 H -0.295 1.295 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.332 4.332 8 H 0.066 0.934 9 N -0.746 5.746 10 C 0.171 3.829 11 C 0.087 3.913 12 H 0.055 0.945 13 C 0.082 3.918 14 N -0.591 5.591 15 C 0.560 3.440 16 O -0.553 6.553 17 C -0.123 4.123 18 C -0.114 4.114 19 C 0.102 3.898 20 N -0.456 5.456 21 C 0.091 3.909 22 C 0.071 3.929 23 F -0.125 7.125 24 C 0.108 3.892 25 C -0.153 4.153 26 C 0.066 3.934 27 O -0.393 6.393 28 H 0.244 0.756 29 H 0.363 0.637 30 H 0.042 0.958 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.186 0.814 36 H 0.205 0.795 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -17.705 -2.534 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.291 4.291 3 Si 0.950 3.050 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.463 4.463 8 H 0.084 0.916 9 N -0.390 5.390 10 C 0.044 3.956 11 C 0.027 3.973 12 H 0.073 0.927 13 C -0.042 4.042 14 N -0.322 5.322 15 C 0.347 3.653 16 O -0.431 6.431 17 C -0.135 4.135 18 C -0.134 4.134 19 C -0.054 4.054 20 N -0.164 5.164 21 C -0.069 4.069 22 C 0.049 3.951 23 F -0.104 7.104 24 C -0.013 4.013 25 C -0.191 4.191 26 C -0.009 4.009 27 O -0.312 6.312 28 H 0.055 0.945 29 H 0.195 0.805 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.170 0.830 35 H 0.203 0.797 36 H 0.222 0.778 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.118 0.882 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.415 -16.074 -3.134 16.729 hybrid contribution -0.649 -2.526 0.688 2.697 sum 2.767 -18.600 -2.446 18.963 Atomic orbital electron populations 1.70986 1.07168 1.27881 1.56184 1.27080 0.97074 1.04397 1.00598 0.82663 0.73407 0.71831 0.77104 1.22100 1.20694 1.20213 1.20350 0.92304 0.86986 1.46670 0.91563 1.42323 1.04823 1.01359 1.90530 1.20649 0.92833 0.83607 0.98560 1.22407 0.92334 0.93797 0.88722 0.92745 1.22500 0.91700 0.84953 1.05082 1.47914 1.44196 1.34410 1.05688 1.18342 0.79970 0.83468 0.83521 1.90787 1.40078 1.26463 1.85767 1.20411 0.98911 0.96533 0.97669 1.22385 1.00742 0.91674 0.98624 1.23145 0.91565 1.00726 0.89964 1.67731 1.10007 1.10174 1.28503 1.23438 0.99480 0.89866 0.94082 1.18912 0.96296 0.82207 0.97698 1.91545 1.86253 1.38865 1.93737 1.22094 0.98442 0.94958 0.85793 1.22428 1.03476 0.95265 0.97958 1.22375 0.89173 0.89528 0.99862 1.86396 1.45839 1.56177 1.42781 0.94548 0.80502 0.94069 0.95809 0.89130 0.87385 0.83042 0.79727 0.77792 0.89413 0.89495 0.89923 0.86547 0.88210 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.86 13.70 21.65 0.30 -59.57 16 2 C -0.10 -5.68 5.50 84.86 0.47 -5.21 16 3 Si 1.12 50.88 29.92 68.60 2.05 52.93 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.33 -18.16 9.99 84.03 0.84 -17.32 16 8 H 0.07 3.53 7.83 -2.91 -0.02 3.50 16 9 N -0.75 -36.27 5.49 -343.45 -1.88 -38.16 16 10 C 0.17 6.36 5.95 86.38 0.51 6.87 16 11 C 0.09 2.57 2.40 31.21 0.08 2.64 16 12 H 0.06 1.62 4.35 -2.39 -0.01 1.61 16 13 C 0.08 1.90 4.52 87.25 0.39 2.29 16 14 N -0.59 -13.73 2.19 -821.17 -1.80 -15.53 16 15 C 0.56 15.31 6.83 86.83 0.59 15.90 16 16 O -0.55 -18.28 16.46 -3.80 -0.06 -18.35 16 17 C -0.12 -3.09 3.90 -19.85 -0.08 -3.17 16 18 C -0.11 -2.70 8.14 22.62 0.18 -2.52 16 19 C 0.10 2.32 11.17 84.64 0.95 3.26 16 20 N -0.46 -10.47 10.33 -195.81 -2.02 -12.49 16 21 C 0.09 1.79 11.17 84.78 0.95 2.74 16 22 C 0.07 1.65 7.34 22.78 0.17 1.82 16 23 F -0.13 -3.07 16.92 44.97 0.76 -2.30 16 24 C 0.11 2.06 6.12 86.38 0.53 2.59 16 25 C -0.15 -2.66 5.79 30.31 0.18 -2.49 16 26 C 0.07 1.57 6.37 71.50 0.46 2.03 16 27 O -0.39 -12.33 9.19 -117.87 -1.08 -13.42 16 28 H 0.24 14.97 6.77 -92.71 -0.63 14.35 16 29 H 0.36 18.61 6.36 -92.71 -0.59 18.02 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 2.02 6.85 -2.39 -0.02 2.00 16 33 H 0.11 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.15 3.59 5.86 -2.91 -0.02 3.57 16 35 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.09 1.80 7.07 -2.39 -0.02 1.78 16 39 H 0.08 1.51 8.01 -2.39 -0.02 1.49 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.03 7.40 -2.39 -0.02 1.01 16 Total: -1.00 -72.31 346.15 3.09 -69.23 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.62 Total: 28.21 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.21 Total: 9.44 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.41 Total: -125.74 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.15 Total: -31.76 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.76 Total: -2.30 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -72.31 3.09 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200172084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.637 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds