Wall clock time and date at job start Tue Mar 31 2020 14:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48501 * 109.47242 * 270.00035 * 3 2 1 5 5 H 1.48495 * 109.47122 * 29.99925 * 3 2 1 6 6 H 1.48501 * 109.46924 * 150.00233 * 3 2 1 7 7 C 1.38812 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00361 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00082 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47242 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46955 * 305.00470 * 11 10 9 13 13 C 1.54806 * 109.47335 * 185.00043 * 11 10 9 14 14 N 1.45119 * 109.53864 * 172.12481 * 13 11 10 15 15 C 1.34777 * 118.75765 * 269.30457 * 14 13 11 16 16 O 1.21549 * 119.99986 * 356.63174 * 15 14 13 17 17 C 1.47842 * 120.00204 * 176.62825 * 15 14 13 18 18 C 1.39559 * 120.54716 * 226.66341 * 17 15 14 19 19 N 1.31662 * 120.62009 * 179.74851 * 18 17 15 20 20 C 1.31936 * 121.90932 * 0.54082 * 19 18 17 21 21 C 1.38538 * 121.04589 * 359.71849 * 20 19 18 22 22 F 1.35096 * 120.37589 * 180.02562 * 21 20 19 23 23 C 1.38621 * 119.25062 * 0.02562 * 21 20 19 24 24 C 1.47509 * 122.48765 * 89.28434 * 14 13 11 25 25 C 1.53570 * 111.02865 * 318.36857 * 24 14 13 26 26 C 1.51534 * 109.58064 * 320.02083 * 25 24 14 27 27 O 1.38026 * 109.46844 * 64.99185 * 11 10 9 28 28 H 0.97001 * 119.99967 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99466 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.46929 * 60.00079 * 10 9 7 31 31 H 1.08996 * 109.47298 * 300.00062 * 10 9 7 32 32 H 1.09003 * 109.45896 * 292.14435 * 13 11 10 33 33 H 1.08997 * 109.45726 * 52.11600 * 13 11 10 34 34 H 1.08003 * 119.69033 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.47828 * 179.75000 * 20 19 18 36 36 H 1.08000 * 120.86468 * 180.02562 * 23 21 20 37 37 H 1.09006 * 109.16443 * 78.76330 * 24 14 13 38 38 H 1.09002 * 109.16986 * 197.96826 * 24 14 13 39 39 H 1.09005 * 109.45301 * 80.05418 * 25 24 14 40 40 H 1.08995 * 109.45383 * 199.98541 * 25 24 14 41 41 H 1.08997 * 109.59127 * 211.18351 * 26 25 24 42 42 H 1.09006 * 109.59039 * 331.62192 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.3800 -4.7134 0.8390 13 6 1.8337 -6.1569 0.1229 14 7 0.8908 -7.2440 0.3097 15 6 0.5433 -7.5926 1.5644 16 8 1.0636 -7.0412 2.5145 17 6 -0.4708 -8.6455 1.7852 18 6 -1.5065 -8.4520 2.7004 19 7 -2.4132 -9.3867 2.8945 20 6 -2.3781 -10.5370 2.2493 21 6 -1.3799 -10.8094 1.3280 22 9 -1.3574 -11.9916 0.6746 23 6 -0.4045 -9.8551 1.0842 24 6 0.2979 -7.9818 -0.8217 25 6 -0.0939 -7.0261 -1.9581 26 6 -0.6925 -5.7621 -1.3749 27 8 0.3463 -4.8111 -1.1822 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0023 30 1 2.6847 -3.7153 0.8873 31 1 2.6847 -3.7137 -0.8927 32 1 2.4121 -6.3298 -0.7847 33 1 2.5068 -6.1090 0.9789 34 1 -1.5669 -7.5254 3.2519 35 1 -3.1400 -11.2779 2.4420 36 1 0.3854 -10.0398 0.3713 37 1 1.0224 -8.7052 -1.1962 38 1 -0.5903 -8.5116 -0.4774 39 1 0.7917 -6.7729 -2.5410 40 1 -0.8266 -7.5105 -2.6034 41 1 -1.4348 -5.3580 -2.0631 42 1 -1.1631 -5.9882 -0.4180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200260516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:18 Heat of formation + Delta-G solvation = -78.093685 kcal Electronic energy + Delta-G solvation = -27621.051876 eV Core-core repulsion = 23515.977581 eV Total energy + Delta-G solvation = -4105.074295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.09473 -42.22910 -40.84750 -39.56363 -37.06396 -36.34146 -34.47006 -33.88160 -32.69761 -32.20340 -30.30009 -28.01651 -27.04539 -25.78190 -24.92439 -24.15437 -22.87827 -22.35328 -20.90658 -19.28165 -19.14365 -18.50182 -18.21774 -17.80068 -17.64587 -17.48522 -17.03992 -16.76894 -16.51858 -15.98731 -15.81703 -15.23290 -15.10695 -14.87999 -14.80330 -14.62230 -14.49185 -14.37521 -13.92963 -13.70558 -13.51071 -13.33881 -13.13173 -12.76926 -12.68292 -12.39669 -12.20743 -12.06568 -11.83832 -11.61410 -11.50119 -11.01250 -10.97671 -10.70793 -10.61620 -10.21004 -9.78380 -9.01341 -7.94140 -5.23932 -0.58833 -0.23363 1.32223 1.47049 1.50032 1.58397 1.70036 2.36782 2.56354 2.68258 2.75190 3.09711 3.28156 3.39557 3.49713 3.52849 3.59521 3.77332 3.87186 3.93372 4.03263 4.11158 4.21675 4.31664 4.35979 4.40797 4.51411 4.56350 4.63137 4.65854 4.70041 4.77496 4.87666 5.05958 5.09396 5.14607 5.31949 5.39006 5.47907 6.02577 6.26485 6.54311 6.71080 6.82615 7.32719 8.06929 8.31489 9.29791 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.002789 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.626001 B =10036.547693 C =10363.938917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.162 3.838 11 C 0.103 3.897 12 H 0.021 0.979 13 C 0.093 3.907 14 N -0.595 5.595 15 C 0.555 3.445 16 O -0.563 6.563 17 C -0.157 4.157 18 C 0.133 3.867 19 N -0.472 5.472 20 C 0.100 3.900 21 C 0.051 3.949 22 F -0.120 7.120 23 C -0.069 4.069 24 C 0.091 3.909 25 C -0.157 4.157 26 C 0.064 3.936 27 O -0.395 6.395 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.202 0.798 36 H 0.180 0.820 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -28.764 -2.715 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.384 5.384 10 C 0.035 3.965 11 C 0.043 3.957 12 H 0.039 0.961 13 C -0.031 4.031 14 N -0.326 5.326 15 C 0.342 3.658 16 O -0.442 6.442 17 C -0.162 4.162 18 C -0.024 4.024 19 N -0.179 5.179 20 C -0.058 4.058 21 C 0.030 3.970 22 F -0.099 7.099 23 C -0.095 4.095 24 C -0.029 4.029 25 C -0.194 4.194 26 C -0.012 4.012 27 O -0.314 6.314 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.219 0.781 36 H 0.197 0.803 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.358 -28.155 -1.807 28.412 hybrid contribution 0.504 0.824 -0.263 1.001 sum -2.854 -27.331 -2.070 27.558 Atomic orbital electron populations 1.69850 1.06787 1.26065 1.59474 1.25645 0.96460 1.01330 1.03607 0.85066 0.77657 0.79055 0.77523 1.21170 1.22167 1.19261 1.19682 0.91608 0.85210 1.41328 0.90317 1.42444 1.05601 1.01002 1.89345 1.20764 0.93106 0.83905 0.98691 1.21920 0.92826 0.94619 0.86354 0.96106 1.22238 0.91702 0.84695 1.04501 1.47929 1.44202 1.34310 1.06174 1.18515 0.81691 0.82339 0.83214 1.90843 1.55031 1.55902 1.42389 1.20636 0.98540 0.95918 1.01154 1.23002 0.88289 0.98378 0.92746 1.67904 1.25029 1.01394 1.23618 1.23683 0.96930 0.94871 0.90342 1.18540 0.98395 0.83326 0.96765 1.91584 1.96132 1.43051 1.79108 1.22077 0.98689 0.90683 0.98085 1.22683 0.99968 0.94539 0.85747 1.22445 1.03638 0.95239 0.98120 1.22391 0.89304 0.89550 0.99971 1.86373 1.49200 1.57839 1.38007 0.94026 0.79564 0.94447 0.94696 0.87029 0.89441 0.81929 0.78110 0.80273 0.87547 0.88281 0.89905 0.86231 0.88708 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.97 13.06 21.65 0.28 -61.69 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.74 -40.57 5.54 -343.46 -1.90 -42.48 16 10 C 0.16 6.93 5.92 86.38 0.51 7.44 16 11 C 0.10 3.65 2.68 31.21 0.08 3.73 16 12 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 13 C 0.09 2.43 4.89 87.25 0.43 2.85 16 14 N -0.60 -12.72 2.19 -821.38 -1.80 -14.51 16 15 C 0.55 13.90 7.24 86.79 0.63 14.53 16 16 O -0.56 -19.30 16.42 -3.87 -0.06 -19.37 16 17 C -0.16 -2.95 4.96 -20.00 -0.10 -3.05 16 18 C 0.13 2.70 10.87 85.04 0.92 3.62 16 19 N -0.47 -8.60 10.34 -194.59 -2.01 -10.62 16 20 C 0.10 1.24 11.16 84.75 0.95 2.18 16 21 C 0.05 0.59 7.33 22.43 0.16 0.75 16 22 F -0.12 -1.32 17.28 44.97 0.78 -0.54 16 23 C -0.07 -0.84 7.48 22.78 0.17 -0.67 16 24 C 0.09 1.15 4.74 86.38 0.41 1.55 16 25 C -0.16 -2.29 5.78 30.31 0.18 -2.12 16 26 C 0.06 1.56 6.37 71.50 0.46 2.01 16 27 O -0.40 -13.70 9.38 -118.00 -1.11 -14.81 16 28 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.37 22.06 7.65 -92.70 -0.71 21.35 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.09 2.51 7.23 -2.39 -0.02 2.49 16 34 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.18 1.27 6.62 -2.91 -0.02 1.25 16 37 H 0.11 0.72 7.85 -2.38 -0.02 0.70 16 38 H 0.10 1.00 4.85 -2.39 -0.01 0.99 16 39 H 0.08 1.33 8.01 -2.38 -0.02 1.31 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.04 0.99 7.40 -2.38 -0.02 0.97 16 Total: -1.00 -77.96 350.72 2.66 -75.30 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.35 Total: 24.10 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.10 Total: 15.01 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.43 Total: -129.29 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.17 Total: -34.18 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.78 Total: -0.54 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -77.96 2.66 -75.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200260516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.793 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds