Wall clock time and date at job start Tue Mar 31 2020 14:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99658 * 2 1 4 4 H 1.48500 * 109.46859 * 269.99490 * 3 2 1 5 5 H 1.48500 * 109.47292 * 29.99455 * 3 2 1 6 6 H 1.48494 * 109.47086 * 149.99910 * 3 2 1 7 7 C 1.38807 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00282 * 180.27091 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.72634 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99373 * 11 10 9 13 13 C 1.54814 * 109.46829 * 185.00283 * 11 10 9 14 14 N 1.45119 * 109.53886 * 172.12005 * 13 11 10 15 15 C 1.34774 * 118.75892 * 269.26071 * 14 13 11 16 16 O 1.21529 * 120.00196 * 179.61636 * 15 14 13 17 17 C 1.48052 * 119.99996 * 359.61211 * 15 14 13 18 18 C 1.39384 * 119.69474 * 188.01674 * 17 15 14 19 19 C 1.38461 * 119.09476 * 179.97438 * 18 17 15 20 20 C 1.38902 * 118.46886 * 359.97438 * 19 18 17 21 21 F 1.35101 * 120.34846 * 180.02562 * 20 19 18 22 22 C 1.38870 * 119.29779 * 0.02562 * 20 19 18 23 23 N 1.31455 * 120.85691 * 359.73766 * 22 20 19 24 24 C 1.47508 * 122.48378 * 89.28599 * 14 13 11 25 25 C 1.53570 * 111.02717 * 318.36310 * 24 14 13 26 26 C 1.51530 * 109.58406 * 320.02598 * 25 24 14 27 27 O 1.38012 * 109.47471 * 64.99581 * 11 10 9 28 28 H 0.96997 * 120.00834 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00408 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47126 * 299.72851 * 10 9 7 31 31 H 1.09003 * 109.46769 * 59.72679 * 10 9 7 32 32 H 1.09000 * 109.46050 * 292.14522 * 13 11 10 33 33 H 1.09002 * 109.45873 * 52.11362 * 13 11 10 34 34 H 1.08001 * 120.44980 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.76403 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.56923 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.16667 * 78.76584 * 24 14 13 38 38 H 1.09000 * 109.16416 * 197.96824 * 24 14 13 39 39 H 1.09003 * 109.44814 * 80.06037 * 25 24 14 40 40 H 1.09000 * 109.44951 * 199.98827 * 25 24 14 41 41 H 1.08999 * 109.59498 * 211.17895 * 26 25 24 42 42 H 1.09005 * 109.59064 * 331.61888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0071 11 6 1.0639 -4.8196 0.0125 12 1 0.3796 -4.7086 0.8537 13 6 1.8338 -6.1561 0.1468 14 7 0.8908 -7.2422 0.3391 15 6 0.5432 -7.5842 1.5956 16 8 -0.2500 -8.4857 1.7826 17 6 1.1276 -6.8616 2.7480 18 6 0.8970 -7.3246 4.0423 19 6 1.4501 -6.6396 5.1110 20 6 2.2176 -5.5119 4.8488 21 9 2.7756 -4.8152 5.8629 22 6 2.4052 -5.1084 3.5334 23 7 1.8711 -5.7819 2.5388 24 6 0.2988 -7.9865 -0.7885 25 6 -0.0923 -7.0372 -1.9305 26 6 -0.6913 -5.7699 -1.3550 27 8 0.3473 -4.8178 -1.1669 28 1 -0.4851 0.8399 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6852 -3.7189 -0.8824 31 1 2.6845 -3.7100 0.8976 32 1 2.4129 -6.3341 -0.7594 33 1 2.5063 -6.1033 1.0030 34 1 0.2952 -8.2057 4.2093 35 1 1.2884 -6.9744 6.1250 36 1 3.0015 -4.2325 3.3245 37 1 1.0235 -8.7119 -1.1583 38 1 -0.5896 -8.5143 -0.4418 39 1 0.7937 -6.7873 -2.5143 40 1 -0.8245 -7.5254 -2.5736 41 1 -1.4332 -5.3696 -2.0460 42 1 -1.1626 -5.9906 -0.3972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200311761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:25 Heat of formation + Delta-G solvation = -39.397173 kcal Electronic energy + Delta-G solvation = -28353.261571 eV Core-core repulsion = 24249.865283 eV Total energy + Delta-G solvation = -4103.396288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.26439 -41.23710 -39.57241 -38.39040 -35.43171 -34.75268 -33.34180 -32.56818 -31.41810 -30.73440 -28.66428 -26.72649 -25.44711 -24.40556 -24.03502 -22.64808 -21.55471 -20.89255 -19.91438 -18.01432 -17.94121 -17.37210 -17.13616 -16.50743 -16.41155 -16.05789 -15.63804 -15.43347 -14.85109 -14.67621 -14.33465 -14.28703 -14.06034 -13.75600 -13.50562 -13.27761 -13.20187 -13.00501 -12.72584 -12.38708 -12.21386 -11.96298 -11.67104 -11.24185 -10.89451 -10.77692 -10.71023 -10.45751 -10.30695 -10.15187 -9.96409 -9.65962 -9.40642 -9.33372 -9.21646 -8.80716 -8.45654 -6.81685 -5.67937 -2.95672 0.22122 0.75103 2.43574 2.76152 3.44823 3.48004 3.52625 3.54494 3.63951 3.87855 4.07803 4.28812 4.43872 4.49883 4.65162 4.77994 4.88595 4.94188 5.13338 5.30309 5.38040 5.39525 5.46208 5.51077 5.52252 5.62814 5.65213 5.69499 5.78474 5.94277 6.07850 6.10341 6.20858 6.35049 6.40815 6.50345 6.74840 6.86975 7.14918 7.35410 7.75495 7.93867 8.12421 8.50469 9.61843 10.21878 10.57049 11.55043 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.004949 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.801298 B = 5656.062146 C = 8001.499215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.171 3.829 11 C 0.100 3.900 12 H 0.048 0.952 13 C 0.053 3.947 14 N -0.585 5.585 15 C 0.567 3.433 16 O -0.540 6.540 17 C 0.063 3.937 18 C -0.083 4.083 19 C -0.117 4.117 20 C 0.074 3.926 21 F -0.123 7.123 22 C 0.080 3.920 23 N -0.411 5.411 24 C 0.108 3.892 25 C -0.165 4.165 26 C 0.074 3.926 27 O -0.373 6.373 28 H 0.254 0.746 29 H 0.386 0.614 30 H 0.023 0.977 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.182 0.818 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -18.904 5.889 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.043 3.957 11 C 0.040 3.960 12 H 0.066 0.934 13 C -0.070 4.070 14 N -0.316 5.316 15 C 0.354 3.646 16 O -0.417 6.417 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.143 4.143 20 C 0.052 3.948 21 F -0.102 7.102 22 C -0.081 4.081 23 N -0.123 5.123 24 C -0.013 4.013 25 C -0.203 4.203 26 C -0.003 4.003 27 O -0.291 6.291 28 H 0.063 0.937 29 H 0.219 0.781 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.199 0.801 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.883 -18.873 4.978 19.730 hybrid contribution 0.040 0.687 1.189 1.374 sum 2.923 -18.186 6.167 19.424 Atomic orbital electron populations 1.69672 1.05106 1.25427 1.57947 1.24715 0.95455 0.97553 1.03323 0.86221 0.78594 0.84081 0.77483 1.21814 1.21923 1.20814 1.19213 0.90931 0.84171 1.42310 0.91235 1.42248 1.05974 0.99572 1.89235 1.20553 0.92374 0.84437 0.98310 1.22135 0.93392 0.93935 0.86545 0.93431 1.23473 0.92697 0.85764 1.05072 1.47837 1.44016 1.34540 1.05164 1.17905 0.81338 0.82672 0.82683 1.90763 1.34938 1.30941 1.85089 1.21235 0.98179 0.94315 0.93699 1.21953 0.97405 1.00285 0.90762 1.21664 0.96944 0.94303 1.01399 1.19111 0.96712 0.92602 0.86392 1.91564 1.82762 1.77606 1.58245 1.23342 0.98720 0.99719 0.86298 1.68251 1.06224 1.05173 1.32609 1.21908 0.99316 0.93888 0.86234 1.22490 1.02803 0.97160 0.97828 1.22092 0.89906 0.88374 0.99900 1.86418 1.48115 1.55681 1.38864 0.93654 0.78079 0.95908 0.94578 0.90795 0.84588 0.82601 0.82814 0.80148 0.91486 0.89108 0.90040 0.89727 0.89374 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.06 55.49 0.72 -28.03 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.90 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.75 5.54 -59.91 -0.33 -19.08 16 10 C 0.17 3.46 5.92 -4.04 -0.02 3.44 16 11 C 0.10 1.73 1.99 -25.77 -0.05 1.68 16 12 H 0.05 0.91 7.59 -51.93 -0.39 0.52 16 13 C 0.05 0.74 4.42 -3.83 -0.02 0.72 16 14 N -0.59 -7.77 2.19 -173.50 -0.38 -8.15 16 15 C 0.57 8.00 7.62 -12.24 -0.09 7.91 16 16 O -0.54 -8.47 15.65 5.34 0.08 -8.39 16 17 C 0.06 0.80 6.58 -83.02 -0.55 0.26 16 18 C -0.08 -0.86 9.63 -39.07 -0.38 -1.23 16 19 C -0.12 -1.05 10.15 -39.25 -0.40 -1.44 16 20 C 0.07 0.78 7.36 -39.10 -0.29 0.49 16 21 F -0.12 -1.35 17.28 2.25 0.04 -1.31 16 22 C 0.08 0.93 11.17 -17.48 -0.20 0.73 16 23 N -0.41 -5.31 4.79 -9.74 -0.05 -5.36 16 24 C 0.11 1.23 6.16 -3.19 -0.02 1.21 16 25 C -0.16 -1.83 5.78 -27.18 -0.16 -1.99 16 26 C 0.07 1.07 6.37 36.41 0.23 1.30 16 27 O -0.37 -6.79 9.38 -26.53 -0.25 -7.04 16 28 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.39 10.81 7.65 -40.82 -0.31 10.49 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.14 1.81 4.66 -72.23 -0.34 1.47 16 34 H 0.16 1.41 7.66 -52.49 -0.40 1.00 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.18 1.96 8.06 -52.48 -0.42 1.53 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 39 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.69 7.40 -51.93 -0.38 0.30 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -33.38 348.45 -7.65 -41.03 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.54 Total: 7.76 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.18 Total: 5.79 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.03 Total: -60.61 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.17 Total: -15.43 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.38 -7.65 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200311761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.634 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds