Wall clock time and date at job start Tue Mar 31 2020 14:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99658 * 2 1 4 4 H 1.48500 * 109.46859 * 269.99490 * 3 2 1 5 5 H 1.48500 * 109.47292 * 29.99455 * 3 2 1 6 6 H 1.48494 * 109.47086 * 149.99910 * 3 2 1 7 7 C 1.38807 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00282 * 180.27091 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.72634 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99373 * 11 10 9 13 13 C 1.54814 * 109.46829 * 185.00283 * 11 10 9 14 14 N 1.45119 * 109.53886 * 172.12005 * 13 11 10 15 15 C 1.34774 * 118.75892 * 269.26071 * 14 13 11 16 16 O 1.21529 * 120.00196 * 179.61636 * 15 14 13 17 17 C 1.48052 * 119.99996 * 359.61211 * 15 14 13 18 18 C 1.39384 * 119.69474 * 188.01674 * 17 15 14 19 19 C 1.38461 * 119.09476 * 179.97438 * 18 17 15 20 20 C 1.38902 * 118.46886 * 359.97438 * 19 18 17 21 21 F 1.35101 * 120.34846 * 180.02562 * 20 19 18 22 22 C 1.38870 * 119.29779 * 0.02562 * 20 19 18 23 23 N 1.31455 * 120.85691 * 359.73766 * 22 20 19 24 24 C 1.47508 * 122.48378 * 89.28599 * 14 13 11 25 25 C 1.53570 * 111.02717 * 318.36310 * 24 14 13 26 26 C 1.51530 * 109.58406 * 320.02598 * 25 24 14 27 27 O 1.38012 * 109.47471 * 64.99581 * 11 10 9 28 28 H 0.96997 * 120.00834 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00408 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47126 * 299.72851 * 10 9 7 31 31 H 1.09003 * 109.46769 * 59.72679 * 10 9 7 32 32 H 1.09000 * 109.46050 * 292.14522 * 13 11 10 33 33 H 1.09002 * 109.45873 * 52.11362 * 13 11 10 34 34 H 1.08001 * 120.44980 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.76403 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.56923 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.16667 * 78.76584 * 24 14 13 38 38 H 1.09000 * 109.16416 * 197.96824 * 24 14 13 39 39 H 1.09003 * 109.44814 * 80.06037 * 25 24 14 40 40 H 1.09000 * 109.44951 * 199.98827 * 25 24 14 41 41 H 1.08999 * 109.59498 * 211.17895 * 26 25 24 42 42 H 1.09005 * 109.59064 * 331.61888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0071 11 6 1.0639 -4.8196 0.0125 12 1 0.3796 -4.7086 0.8537 13 6 1.8338 -6.1561 0.1468 14 7 0.8908 -7.2422 0.3391 15 6 0.5432 -7.5842 1.5956 16 8 -0.2500 -8.4857 1.7826 17 6 1.1276 -6.8616 2.7480 18 6 0.8970 -7.3246 4.0423 19 6 1.4501 -6.6396 5.1110 20 6 2.2176 -5.5119 4.8488 21 9 2.7756 -4.8152 5.8629 22 6 2.4052 -5.1084 3.5334 23 7 1.8711 -5.7819 2.5388 24 6 0.2988 -7.9865 -0.7885 25 6 -0.0923 -7.0372 -1.9305 26 6 -0.6913 -5.7699 -1.3550 27 8 0.3473 -4.8178 -1.1669 28 1 -0.4851 0.8399 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6852 -3.7189 -0.8824 31 1 2.6845 -3.7100 0.8976 32 1 2.4129 -6.3341 -0.7594 33 1 2.5063 -6.1033 1.0030 34 1 0.2952 -8.2057 4.2093 35 1 1.2884 -6.9744 6.1250 36 1 3.0015 -4.2325 3.3245 37 1 1.0235 -8.7119 -1.1583 38 1 -0.5896 -8.5143 -0.4418 39 1 0.7937 -6.7873 -2.5143 40 1 -0.8245 -7.5254 -2.5736 41 1 -1.4332 -5.3696 -2.0460 42 1 -1.1626 -5.9906 -0.3972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200311761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:25 Heat of formation + Delta-G solvation = -60.816703 kcal Electronic energy + Delta-G solvation = -28354.190392 eV Core-core repulsion = 24249.865283 eV Total energy + Delta-G solvation = -4104.325109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.12077 -42.24468 -40.61202 -39.58270 -36.71673 -36.34648 -34.65640 -33.56227 -32.89177 -32.00058 -30.13955 -27.85823 -26.91198 -25.55274 -24.95650 -24.32145 -22.68144 -22.29136 -20.92002 -19.19809 -18.97415 -18.80557 -18.38438 -17.70448 -17.51890 -16.96898 -16.78406 -16.76285 -16.21248 -16.03534 -15.58796 -15.26870 -15.06809 -14.99801 -14.76605 -14.55743 -14.52248 -14.26087 -13.83869 -13.73774 -13.52208 -13.26278 -12.92639 -12.74304 -12.61272 -12.33894 -12.09123 -11.89263 -11.76104 -11.56385 -11.38112 -11.06856 -10.91204 -10.58531 -10.32557 -10.14714 -9.59572 -8.92669 -7.88431 -5.16642 -0.67318 -0.05940 1.43334 1.50011 1.52438 1.60438 1.77995 2.51953 2.60334 2.75471 2.80953 2.96788 3.42431 3.46040 3.63305 3.72152 3.75402 3.86005 4.01956 4.09395 4.14014 4.19121 4.35537 4.47479 4.50016 4.59008 4.62037 4.68608 4.73170 4.76837 4.80232 4.96892 5.03324 5.12562 5.20552 5.26987 5.41626 5.52867 5.54647 6.10273 6.32219 6.42303 6.81032 6.90628 7.38647 8.15440 8.39128 9.35801 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.004949 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.801298 B = 5656.062146 C = 8001.499215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.170 3.830 11 C 0.114 3.886 12 H 0.024 0.976 13 C 0.068 3.932 14 N -0.586 5.586 15 C 0.563 3.437 16 O -0.560 6.560 17 C 0.042 3.958 18 C -0.077 4.077 19 C -0.100 4.100 20 C 0.074 3.926 21 F -0.125 7.125 22 C 0.067 3.933 23 N -0.429 5.429 24 C 0.105 3.895 25 C -0.152 4.152 26 C 0.069 3.931 27 O -0.402 6.402 28 H 0.248 0.752 29 H 0.370 0.630 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -20.161 6.396 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.381 5.381 10 C 0.043 3.957 11 C 0.054 3.946 12 H 0.042 0.958 13 C -0.056 4.056 14 N -0.316 5.316 15 C 0.351 3.649 16 O -0.440 6.440 17 C -0.095 4.095 18 C -0.098 4.098 19 C -0.126 4.126 20 C 0.052 3.948 21 F -0.103 7.103 22 C -0.094 4.094 23 N -0.140 5.140 24 C -0.016 4.016 25 C -0.190 4.190 26 C -0.007 4.007 27 O -0.322 6.322 28 H 0.057 0.943 29 H 0.201 0.799 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.188 0.812 35 H 0.207 0.793 36 H 0.200 0.800 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.124 -20.172 5.476 21.305 hybrid contribution -0.352 1.021 1.053 1.508 sum 3.771 -19.152 6.529 20.583 Atomic orbital electron populations 1.69850 1.06828 1.25799 1.60043 1.25562 0.96285 1.01117 1.04118 0.85138 0.77831 0.79486 0.77316 1.21698 1.22548 1.18915 1.19675 0.91599 0.85126 1.40417 0.90125 1.42459 1.05454 1.01044 1.89190 1.20719 0.92884 0.83371 0.98681 1.21854 0.92573 0.94708 0.85488 0.95839 1.23252 0.92261 0.84044 1.06011 1.47906 1.43846 1.34215 1.05647 1.18159 0.81022 0.82488 0.83230 1.90740 1.35851 1.31933 1.85447 1.21243 0.99236 0.94764 0.94267 1.22134 0.97039 1.00556 0.90063 1.21981 0.95058 0.92902 1.02661 1.19151 0.96786 0.92996 0.85860 1.91563 1.82844 1.77766 1.58173 1.23409 0.99081 0.99963 0.86903 1.68093 1.06925 1.05598 1.33407 1.22072 0.99770 0.94065 0.85675 1.22400 1.03317 0.95430 0.97866 1.22281 0.89411 0.89335 0.99658 1.86344 1.49188 1.57618 1.39023 0.94280 0.79893 0.95990 0.92843 0.89641 0.83829 0.81215 0.79337 0.80036 0.89263 0.89468 0.90054 0.86775 0.88830 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.83 5.54 -343.45 -1.90 -40.73 16 10 C 0.17 6.89 5.92 86.38 0.51 7.40 16 11 C 0.11 3.97 1.99 31.21 0.06 4.03 16 12 H 0.02 0.94 7.59 -2.39 -0.02 0.92 16 13 C 0.07 1.83 4.42 87.26 0.39 2.21 16 14 N -0.59 -15.05 2.19 -821.13 -1.80 -16.84 16 15 C 0.56 15.54 7.62 86.85 0.66 16.20 16 16 O -0.56 -17.20 15.65 -3.81 -0.06 -17.26 16 17 C 0.04 1.03 6.58 41.89 0.28 1.31 16 18 C -0.08 -1.46 9.63 22.60 0.22 -1.24 16 19 C -0.10 -1.55 10.15 22.48 0.23 -1.32 16 20 C 0.07 1.44 7.36 22.58 0.17 1.61 16 21 F -0.12 -2.54 17.28 44.97 0.78 -1.77 16 22 C 0.07 1.53 11.17 84.90 0.95 2.47 16 23 N -0.43 -10.90 4.79 -184.74 -0.88 -11.79 16 24 C 0.10 2.21 6.16 86.38 0.53 2.74 16 25 C -0.15 -3.12 5.78 30.30 0.18 -2.95 16 26 C 0.07 1.98 6.37 71.50 0.46 2.44 16 27 O -0.40 -14.83 9.38 -117.83 -1.11 -15.93 16 28 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.37 21.45 7.65 -92.71 -0.71 20.74 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.15 3.71 4.66 -42.47 -0.20 3.51 16 34 H 0.17 2.71 7.66 -2.91 -0.02 2.69 16 35 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.93 6.99 -2.39 -0.02 1.92 16 39 H 0.08 1.72 8.01 -2.39 -0.02 1.70 16 40 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 42 H 0.03 1.01 7.40 -2.38 -0.02 1.00 16 Total: -1.00 -72.57 348.45 3.43 -69.14 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.16 Total: 29.39 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 5.93 Total: 18.29 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -4.30 Total: -130.48 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.17 Total: -33.20 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.57 3.43 -69.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200311761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.325 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds