Wall clock time and date at job start Tue Mar 31 2020 14:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48504 * 109.47180 * 244.99722 * 3 2 1 5 5 H 1.48498 * 109.47540 * 5.00116 * 3 2 1 6 6 H 1.48507 * 109.47192 * 125.00191 * 3 2 1 7 7 C 1.37870 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99898 * 185.13744 * 7 2 1 9 9 C 1.50703 * 120.00091 * 5.13956 * 7 2 1 10 10 N 1.46907 * 109.46993 * 175.20894 * 9 7 2 11 11 C 1.46902 * 110.99530 * 171.84797 * 10 9 7 12 12 C 1.50696 * 109.47043 * 293.94952 * 11 10 9 13 13 C 1.38237 * 119.98945 * 270.30011 * 12 11 10 14 14 C 1.38220 * 120.01209 * 180.25424 * 13 12 11 15 15 C 1.38350 * 119.98463 * 359.47562 * 14 13 12 16 16 Cl 1.73605 * 120.01035 * 180.27286 * 15 14 13 17 17 C 1.38348 * 119.97480 * 0.25026 * 15 14 13 18 18 C 1.38211 * 119.98797 * 359.97438 * 17 15 14 19 19 C 1.46897 * 110.99755 * 295.80202 * 10 9 7 20 20 C 1.53001 * 109.46692 * 160.49448 * 19 10 9 21 21 C 1.53184 * 109.54436 * 293.88413 * 20 19 10 22 22 C 1.53092 * 109.16397 * 183.15664 * 21 20 19 23 23 O 1.42897 * 109.41696 * 57.60949 * 22 21 20 24 24 C 1.42908 * 114.09760 * 298.84373 * 23 22 21 25 25 C 1.53092 * 109.41551 * 61.15715 * 24 23 22 26 26 H 0.97003 * 119.99644 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47206 * 55.20790 * 9 7 2 28 28 H 1.08995 * 109.46960 * 295.20510 * 9 7 2 29 29 H 1.09005 * 109.46588 * 173.95361 * 11 10 9 30 30 H 1.08999 * 109.47289 * 53.95525 * 11 10 9 31 31 H 1.08002 * 119.99810 * 0.02562 * 13 12 11 32 32 H 1.08002 * 120.00418 * 179.74543 * 14 13 12 33 33 H 1.08003 * 120.00540 * 180.02562 * 17 15 14 34 34 H 1.08004 * 119.99457 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.47236 * 280.49132 * 19 10 9 36 36 H 1.09000 * 109.47626 * 40.49447 * 19 10 9 37 37 H 1.08994 * 109.54543 * 54.15257 * 20 19 10 38 38 H 1.09003 * 109.52001 * 303.06066 * 21 20 19 39 39 H 1.08995 * 109.51974 * 63.24792 * 21 20 19 40 40 H 1.09010 * 109.47903 * 297.62760 * 22 21 20 41 41 H 1.09001 * 109.47936 * 177.59618 * 22 21 20 42 42 H 1.09005 * 109.47883 * 301.17084 * 24 23 22 43 43 H 1.09005 * 109.48898 * 181.14722 * 24 23 22 44 44 H 1.09004 * 109.51946 * 182.48803 * 25 24 23 45 45 H 1.08997 * 109.52040 * 62.29667 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0091 1.7507 -1.2689 5 1 1.2887 2.7438 0.1220 6 1 3.1921 1.6450 1.1469 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0843 9 6 1.2556 -2.4966 -0.1158 10 7 2.2141 -3.6061 -0.2067 11 6 1.5277 -4.9025 -0.1270 12 6 0.9195 -5.0654 1.2421 13 6 1.6535 -5.6458 2.2597 14 6 1.0942 -5.8002 3.5142 15 6 -0.1966 -5.3641 3.7543 16 17 -0.8971 -5.5513 5.3316 17 6 -0.9286 -4.7782 2.7370 18 6 -0.3700 -4.6285 1.4817 19 6 3.0162 -3.5096 -1.4335 20 6 4.2875 -4.3467 -1.2787 21 6 5.1769 -3.7320 -0.1935 22 6 6.4804 -4.5295 -0.1006 23 8 7.1287 -4.5302 -1.3741 24 6 6.3634 -5.1356 -2.4181 25 6 5.0552 -4.3624 -2.6042 26 1 -0.4850 0.8401 -0.0004 27 1 0.6337 -2.4794 -1.0108 28 1 0.6247 -2.6325 0.7625 29 1 2.2444 -5.7045 -0.3039 30 1 0.7419 -4.9445 -0.8811 31 1 2.6628 -5.9819 2.0735 32 1 1.6664 -6.2574 4.3080 33 1 -1.9362 -4.4371 2.9240 34 1 -0.9416 -4.1715 0.6874 35 1 2.4359 -3.8829 -2.2774 36 1 3.2861 -2.4684 -1.6104 37 1 4.0212 -5.3661 -0.9995 38 1 5.4010 -2.6964 -0.4497 39 1 4.6591 -3.7673 0.7649 40 1 6.2587 -5.5551 0.1950 41 1 7.1351 -4.0709 0.6404 42 1 6.1403 -6.1691 -2.1528 43 1 6.9338 -5.1138 -3.3467 44 1 4.4504 -4.8487 -3.3697 45 1 5.2769 -3.3396 -2.9089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202596869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:35 Heat of formation + Delta-G solvation = -39.853186 kcal Electronic energy + Delta-G solvation = -25564.183168 eV Core-core repulsion = 21992.643824 eV Total energy + Delta-G solvation = -3571.539344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.48678 -39.02515 -36.92794 -36.12301 -33.67080 -32.60962 -30.93496 -30.84454 -30.72129 -27.61182 -26.67826 -24.37528 -23.33428 -22.79216 -22.30786 -21.34328 -20.12162 -19.44272 -16.82990 -16.47354 -16.01510 -15.82023 -15.45217 -15.21353 -14.66125 -14.58235 -14.51534 -14.25653 -13.70184 -13.46030 -13.27112 -13.14995 -12.99126 -12.45100 -12.15933 -12.05988 -11.91601 -11.52379 -11.30250 -11.19869 -11.17437 -11.08620 -10.85095 -10.75518 -10.64584 -10.59363 -10.37785 -10.12651 -9.96534 -9.86024 -9.28768 -9.21752 -8.73407 -8.42005 -8.29679 -7.31514 -6.06156 -4.05888 1.41558 1.59035 2.31161 3.31143 3.35949 3.38679 3.87432 4.01531 4.40800 4.76322 4.98806 5.02432 5.11129 5.11915 5.14155 5.26893 5.29237 5.30431 5.42745 5.54288 5.55787 5.61473 5.67113 5.80140 5.82572 5.88279 5.95644 6.03448 6.09461 6.15756 6.19828 6.23721 6.40837 6.46267 6.48286 6.53588 6.69527 6.82189 6.89485 7.08006 7.26921 7.28448 7.33597 7.77284 8.03923 8.13438 8.49325 9.01012 9.57858 11.04732 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007939 B = 0.004722 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.090765 B = 5928.662521 C = 8439.218675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.527 5.527 11 C 0.088 3.912 12 C -0.054 4.054 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.039 4.039 16 Cl -0.087 7.087 17 C -0.111 4.111 18 C -0.087 4.087 19 C 0.068 3.932 20 C -0.081 4.081 21 C -0.138 4.138 22 C 0.059 3.941 23 O -0.389 6.389 24 C 0.064 3.936 25 C -0.152 4.152 26 H 0.261 0.739 27 H -0.011 1.011 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.020 0.980 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -13.701 0.867 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.063 3.937 10 N -0.251 5.251 11 C -0.040 4.040 12 C -0.055 4.055 13 C -0.109 4.109 14 C -0.136 4.136 15 C -0.066 4.066 16 Cl -0.058 7.058 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.061 4.061 20 C -0.100 4.100 21 C -0.176 4.176 22 C -0.017 4.017 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.191 4.191 26 H 0.071 0.929 27 H 0.007 0.993 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.038 0.962 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.828 -13.465 1.373 14.370 hybrid contribution -0.634 0.928 -0.448 1.210 sum 4.194 -12.537 0.925 13.252 Atomic orbital electron populations 1.69946 1.06018 1.26841 1.50774 1.24946 0.94801 0.99159 0.95451 0.86639 0.79578 0.83068 0.78645 1.20365 1.21392 1.20105 1.21086 0.93797 0.89937 1.49737 0.91885 1.19848 0.90282 0.87306 0.96237 1.62125 1.25740 1.01202 1.36025 1.21061 0.96562 0.94451 0.91920 1.19908 0.93430 0.95938 0.96238 1.20882 0.99329 0.98998 0.91695 1.20927 0.93512 1.01365 0.97777 1.20835 0.94951 1.04470 0.86300 1.98338 1.84511 1.96463 1.26526 1.20973 1.00308 0.99425 0.92218 1.21108 0.95327 0.97495 0.96606 1.22045 0.92472 1.01297 0.90251 1.21184 0.95373 0.99353 0.94108 1.22085 0.94644 0.99938 1.00884 1.22671 0.94938 0.99136 0.84983 1.87887 1.43609 1.81089 1.18200 1.22510 0.92558 0.95258 0.90922 1.22236 0.96650 1.01875 0.98302 0.92917 0.99312 0.94290 0.91105 0.94901 0.85472 0.85544 0.85355 0.85114 0.96218 0.89131 0.91986 0.91233 0.89425 0.93829 0.89378 0.93729 0.89500 0.91412 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.53 8.10 -34.44 -0.28 -13.81 16 8 H 0.06 1.67 7.38 -52.48 -0.39 1.29 16 9 C 0.19 4.54 4.47 -4.97 -0.02 4.52 16 10 N -0.53 -10.11 4.00 -237.51 -0.95 -11.06 16 11 C 0.09 1.42 4.95 -4.98 -0.02 1.40 16 12 C -0.05 -0.88 4.90 -104.62 -0.51 -1.39 16 13 C -0.09 -1.30 9.70 -39.59 -0.38 -1.68 16 14 C -0.12 -1.62 9.83 -39.55 -0.39 -2.01 16 15 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 16 16 Cl -0.09 -1.16 28.96 -51.86 -1.50 -2.66 16 17 C -0.11 -1.71 9.83 -39.55 -0.39 -2.09 16 18 C -0.09 -1.43 7.86 -39.59 -0.31 -1.74 16 19 C 0.07 1.18 4.22 -3.82 -0.02 1.17 16 20 C -0.08 -1.15 2.33 -90.43 -0.21 -1.36 16 21 C -0.14 -2.03 5.28 -26.59 -0.14 -2.17 16 22 C 0.06 0.76 6.84 37.20 0.25 1.01 16 23 O -0.39 -5.41 10.77 -35.23 -0.38 -5.79 16 24 C 0.06 0.74 6.84 37.21 0.25 1.00 16 25 C -0.15 -1.90 5.42 -26.59 -0.14 -2.05 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 28 H 0.04 1.00 5.60 -51.93 -0.29 0.71 16 29 H 0.07 0.99 6.49 -51.93 -0.34 0.65 16 30 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 31 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.13 2.22 7.91 -52.48 -0.42 1.80 16 35 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 36 H 0.09 1.84 6.52 -51.93 -0.34 1.50 16 37 H 0.06 0.83 6.64 -51.93 -0.34 0.49 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.40 7.89 -51.93 -0.41 0.99 16 40 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -28.67 372.34 -11.31 -39.98 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.14 Total: 1.28 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.66 Total: -18.55 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.21 Total: -36.18 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.38 Total: -5.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.67 -11.31 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202596869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.129 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds