Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48504 * 109.47180 * 244.99722 * 3 2 1 5 5 H 1.48498 * 109.47540 * 5.00116 * 3 2 1 6 6 H 1.48507 * 109.47192 * 125.00191 * 3 2 1 7 7 C 1.37870 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99898 * 185.13744 * 7 2 1 9 9 C 1.50703 * 120.00091 * 5.13956 * 7 2 1 10 10 N 1.46907 * 109.46993 * 175.20894 * 9 7 2 11 11 C 1.46902 * 110.99530 * 171.84797 * 10 9 7 12 12 C 1.50696 * 109.47043 * 293.94952 * 11 10 9 13 13 C 1.38237 * 119.98945 * 270.30011 * 12 11 10 14 14 C 1.38220 * 120.01209 * 180.25424 * 13 12 11 15 15 C 1.38350 * 119.98463 * 359.47562 * 14 13 12 16 16 Cl 1.73605 * 120.01035 * 180.27286 * 15 14 13 17 17 C 1.38348 * 119.97480 * 0.25026 * 15 14 13 18 18 C 1.38211 * 119.98797 * 359.97438 * 17 15 14 19 19 C 1.46897 * 110.99755 * 295.80202 * 10 9 7 20 20 C 1.53001 * 109.46692 * 160.49448 * 19 10 9 21 21 C 1.53184 * 109.54436 * 293.88413 * 20 19 10 22 22 C 1.53092 * 109.16397 * 183.15664 * 21 20 19 23 23 O 1.42897 * 109.41696 * 57.60949 * 22 21 20 24 24 C 1.42908 * 114.09760 * 298.84373 * 23 22 21 25 25 C 1.53092 * 109.41551 * 61.15715 * 24 23 22 26 26 H 0.97003 * 119.99644 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47206 * 55.20790 * 9 7 2 28 28 H 1.08995 * 109.46960 * 295.20510 * 9 7 2 29 29 H 1.09005 * 109.46588 * 173.95361 * 11 10 9 30 30 H 1.08999 * 109.47289 * 53.95525 * 11 10 9 31 31 H 1.08002 * 119.99810 * 0.02562 * 13 12 11 32 32 H 1.08002 * 120.00418 * 179.74543 * 14 13 12 33 33 H 1.08003 * 120.00540 * 180.02562 * 17 15 14 34 34 H 1.08004 * 119.99457 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.47236 * 280.49132 * 19 10 9 36 36 H 1.09000 * 109.47626 * 40.49447 * 19 10 9 37 37 H 1.08994 * 109.54543 * 54.15257 * 20 19 10 38 38 H 1.09003 * 109.52001 * 303.06066 * 21 20 19 39 39 H 1.08995 * 109.51974 * 63.24792 * 21 20 19 40 40 H 1.09010 * 109.47903 * 297.62760 * 22 21 20 41 41 H 1.09001 * 109.47936 * 177.59618 * 22 21 20 42 42 H 1.09005 * 109.47883 * 301.17084 * 24 23 22 43 43 H 1.09005 * 109.48898 * 181.14722 * 24 23 22 44 44 H 1.09004 * 109.51946 * 182.48803 * 25 24 23 45 45 H 1.08997 * 109.52040 * 62.29667 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0091 1.7507 -1.2689 5 1 1.2887 2.7438 0.1220 6 1 3.1921 1.6450 1.1469 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0843 9 6 1.2556 -2.4966 -0.1158 10 7 2.2141 -3.6061 -0.2067 11 6 1.5277 -4.9025 -0.1270 12 6 0.9195 -5.0654 1.2421 13 6 1.6535 -5.6458 2.2597 14 6 1.0942 -5.8002 3.5142 15 6 -0.1966 -5.3641 3.7543 16 17 -0.8971 -5.5513 5.3316 17 6 -0.9286 -4.7782 2.7370 18 6 -0.3700 -4.6285 1.4817 19 6 3.0162 -3.5096 -1.4335 20 6 4.2875 -4.3467 -1.2787 21 6 5.1769 -3.7320 -0.1935 22 6 6.4804 -4.5295 -0.1006 23 8 7.1287 -4.5302 -1.3741 24 6 6.3634 -5.1356 -2.4181 25 6 5.0552 -4.3624 -2.6042 26 1 -0.4850 0.8401 -0.0004 27 1 0.6337 -2.4794 -1.0108 28 1 0.6247 -2.6325 0.7625 29 1 2.2444 -5.7045 -0.3039 30 1 0.7419 -4.9445 -0.8811 31 1 2.6628 -5.9819 2.0735 32 1 1.6664 -6.2574 4.3080 33 1 -1.9362 -4.4371 2.9240 34 1 -0.9416 -4.1715 0.6874 35 1 2.4359 -3.8829 -2.2774 36 1 3.2861 -2.4684 -1.6104 37 1 4.0212 -5.3661 -0.9995 38 1 5.4010 -2.6964 -0.4497 39 1 4.6591 -3.7673 0.7649 40 1 6.2587 -5.5551 0.1950 41 1 7.1351 -4.0709 0.6404 42 1 6.1403 -6.1691 -2.1528 43 1 6.9338 -5.1138 -3.3467 44 1 4.4504 -4.8487 -3.3697 45 1 5.2769 -3.3396 -2.9089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202596869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = -54.653247 kcal Electronic energy + Delta-G solvation = -25564.824946 eV Core-core repulsion = 21992.643824 eV Total energy + Delta-G solvation = -3572.181123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69392 -40.11725 -38.28048 -37.29118 -35.09623 -34.41367 -32.20085 -31.97328 -31.85695 -29.40590 -27.96625 -25.95837 -24.42633 -24.11551 -23.59912 -22.64262 -21.49137 -20.68045 -18.49606 -18.01197 -17.14927 -16.84368 -16.78418 -16.50171 -16.33891 -15.96437 -15.63257 -15.45918 -15.15674 -14.71451 -14.47353 -14.37905 -14.24318 -13.94231 -13.83836 -13.26746 -13.17991 -12.96401 -12.81387 -12.63520 -12.55549 -12.36847 -12.31840 -12.16800 -12.10861 -11.83338 -11.72837 -11.61888 -11.24664 -11.18346 -11.02770 -10.57209 -10.31741 -9.89766 -9.51433 -8.93170 -8.18733 -6.24862 0.21485 0.41203 1.17572 1.38983 1.40036 1.47912 2.39303 2.66315 3.08554 3.14855 3.41021 3.83468 3.87599 3.91593 4.01557 4.08203 4.10404 4.22508 4.31146 4.41301 4.43690 4.51735 4.60955 4.65957 4.70554 4.78975 4.81885 4.86216 4.90945 4.97530 5.05427 5.08225 5.10462 5.23135 5.27768 5.30064 5.35782 5.41903 5.46812 5.60940 5.66264 5.71282 5.90616 6.11575 6.37382 6.38894 6.67675 6.91486 7.43222 8.91853 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007939 B = 0.004722 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.090765 B = 5928.662521 C = 8439.218675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.206 3.794 10 N -0.525 5.525 11 C 0.091 3.909 12 C -0.071 4.071 13 C -0.087 4.087 14 C -0.113 4.113 15 C -0.045 4.045 16 Cl -0.074 7.074 17 C -0.121 4.121 18 C -0.106 4.106 19 C 0.070 3.930 20 C -0.071 4.071 21 C -0.134 4.134 22 C 0.064 3.936 23 O -0.407 6.407 24 C 0.063 3.937 25 C -0.149 4.149 26 H 0.262 0.738 27 H -0.045 1.045 28 H 0.021 0.979 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -15.504 1.429 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.080 3.920 10 N -0.249 5.249 11 C -0.037 4.037 12 C -0.072 4.072 13 C -0.105 4.105 14 C -0.131 4.131 15 C -0.072 4.072 16 Cl -0.045 7.045 17 C -0.140 4.140 18 C -0.125 4.125 19 C -0.058 4.058 20 C -0.090 4.090 21 C -0.172 4.172 22 C -0.012 4.012 23 O -0.327 6.327 24 C -0.013 4.013 25 C -0.188 4.188 26 H 0.070 0.930 27 H -0.027 1.027 28 H 0.039 0.961 29 H 0.121 0.879 30 H 0.043 0.957 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.916 -15.284 1.929 16.887 hybrid contribution -1.322 1.439 -0.601 2.044 sum 5.595 -13.845 1.329 14.992 Atomic orbital electron populations 1.70071 1.07447 1.27557 1.52055 1.25747 0.95567 1.02579 0.95297 0.85666 0.78394 0.79067 0.78930 1.19583 1.21074 1.19530 1.21403 0.93769 0.91276 1.48866 0.92209 1.19445 0.90288 0.88546 0.93747 1.62049 1.24648 1.01234 1.36960 1.21132 0.96969 0.93401 0.92157 1.19988 0.93438 0.96991 0.96757 1.21161 1.00152 0.97986 0.91227 1.21267 0.93160 1.00410 0.98312 1.20984 0.95420 1.04107 0.86678 1.98341 1.84424 1.96353 1.25367 1.21077 1.00879 0.99855 0.92186 1.21080 0.96054 0.98560 0.96832 1.22023 0.93941 1.00143 0.89668 1.21104 0.93454 0.99251 0.95184 1.22009 0.96037 0.98948 1.00220 1.22665 0.93623 0.99888 0.85024 1.87874 1.44323 1.81566 1.18898 1.22670 0.91727 0.95717 0.91186 1.22221 0.97528 1.01463 0.97555 0.92966 1.02714 0.96113 0.87880 0.95673 0.82886 0.82774 0.84822 0.87017 0.96016 0.92605 0.89999 0.94010 0.90730 0.91669 0.88647 0.91722 0.87747 0.89715 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.29 -55.18 16 2 C 0.01 0.35 5.45 84.65 0.46 0.81 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.51 -28.39 8.10 25.60 0.21 -28.18 16 8 H 0.06 3.27 7.38 -2.91 -0.02 3.25 16 9 C 0.21 10.40 4.47 85.56 0.38 10.78 16 10 N -0.53 -20.42 4.00 -905.35 -3.63 -24.05 16 11 C 0.09 2.89 4.95 85.56 0.42 3.31 16 12 C -0.07 -2.26 4.90 -19.86 -0.10 -2.36 16 13 C -0.09 -2.30 9.70 22.27 0.22 -2.08 16 14 C -0.11 -2.86 9.83 22.29 0.22 -2.65 16 15 C -0.05 -1.28 6.32 22.32 0.14 -1.13 16 16 Cl -0.07 -1.84 28.96 -2.72 -0.08 -1.92 16 17 C -0.12 -3.79 9.83 22.29 0.22 -3.57 16 18 C -0.11 -3.65 7.86 22.26 0.18 -3.47 16 19 C 0.07 2.49 4.22 86.30 0.36 2.85 16 20 C -0.07 -1.90 2.33 -10.67 -0.02 -1.93 16 21 C -0.13 -3.82 5.28 30.69 0.16 -3.66 16 22 C 0.06 1.48 6.84 72.01 0.49 1.97 16 23 O -0.41 -10.27 10.77 -148.98 -1.60 -11.87 16 24 C 0.06 1.26 6.84 72.01 0.49 1.75 16 25 C -0.15 -3.44 5.42 30.69 0.17 -3.27 16 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 27 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 28 H 0.02 1.13 5.60 -2.39 -0.01 1.12 16 29 H 0.10 2.60 6.49 -2.38 -0.02 2.58 16 30 H 0.03 0.84 8.06 -2.39 -0.02 0.82 16 31 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 34 H 0.11 4.13 7.91 -2.91 -0.02 4.11 16 35 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 36 H 0.06 2.36 6.52 -2.39 -0.02 2.34 16 37 H 0.08 1.90 6.64 -2.39 -0.02 1.89 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 2.30 7.89 -2.39 -0.02 2.29 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.64 372.34 1.97 -61.67 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.96 Total: 15.68 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.00 Total: -30.83 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -3.34 Total: -79.23 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.60 Total: -11.87 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -63.64 1.97 -61.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202596869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.019 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds