Wall clock time and date at job start Tue Mar 31 2020 14:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99693 * 2 1 4 4 H 1.48500 * 109.46670 * 269.99948 * 3 2 1 5 5 H 1.48500 * 109.47082 * 30.00043 * 3 2 1 6 6 H 1.48500 * 109.46893 * 150.00034 * 3 2 1 7 7 C 1.37875 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00130 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47376 * 184.58964 * 9 7 2 11 11 C 1.46900 * 111.00236 * 299.15863 * 10 9 7 12 12 C 1.50700 * 109.46930 * 287.58803 * 11 10 9 13 13 C 1.34037 * 124.91493 * 94.12738 * 12 11 10 14 14 C 1.46628 * 106.17739 * 179.86390 * 13 12 11 15 15 C 1.39144 * 135.25520 * 180.08993 * 14 13 12 16 16 N 1.31764 * 120.09427 * 180.30484 * 15 14 13 17 17 C 1.32248 * 122.11310 * 0.02562 * 16 15 14 18 18 C 1.37801 * 121.51847 * 0.02562 * 17 16 15 19 19 C 1.39156 * 118.91867 * 359.97438 * 18 17 16 20 20 O 1.34369 * 134.63912 * 180.02562 * 19 18 17 21 21 C 1.46905 * 111.00110 * 63.10861 * 10 9 7 22 22 C 1.50704 * 109.46675 * 66.04871 * 21 10 9 23 23 C 1.38228 * 119.61751 * 94.98357 * 22 21 10 24 24 C 1.38624 * 119.15876 * 179.78808 * 23 22 21 25 25 C 1.38678 * 118.41936 * 0.47246 * 24 23 22 26 26 C 1.38174 * 119.16373 * 359.50003 * 25 24 23 27 27 N 1.31857 * 119.61612 * 274.99525 * 22 21 10 28 28 H 0.96999 * 120.00616 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46750 * 64.59032 * 9 7 2 30 30 H 1.09002 * 109.47606 * 304.59095 * 9 7 2 31 31 H 1.09003 * 109.47303 * 47.57955 * 11 10 9 32 32 H 1.08998 * 109.47581 * 167.58815 * 11 10 9 33 33 H 1.07997 * 126.91020 * 0.02562 * 13 12 11 34 34 H 1.08005 * 119.95477 * 0.30427 * 15 14 13 35 35 H 1.07997 * 119.24349 * 179.97438 * 17 16 15 36 36 H 1.08006 * 120.54239 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46689 * 306.04886 * 21 10 9 38 38 H 1.08997 * 109.47431 * 186.04491 * 21 10 9 39 39 H 1.07998 * 120.42088 * 359.97438 * 23 22 21 40 40 H 1.08001 * 120.79080 * 180.22886 * 24 23 22 41 41 H 1.08001 * 120.41530 * 179.78671 * 25 24 23 42 42 H 1.08000 * 119.61927 * 180.25221 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5745 -0.1101 11 6 3.5473 -3.3864 1.0268 12 6 4.3032 -2.9821 2.2663 13 6 3.8781 -2.0833 3.1652 14 6 4.9201 -2.0103 4.1941 15 6 5.0964 -1.2924 5.3730 16 7 6.1880 -1.4599 6.0916 17 6 7.1446 -2.2993 5.7320 18 6 7.0501 -3.0479 4.5789 19 6 5.9190 -2.9127 3.7796 20 8 5.5058 -3.4659 2.6269 21 6 3.5915 -3.1784 -1.3851 22 6 4.2753 -2.4637 -2.5221 23 6 5.4540 -2.9699 -3.0369 24 6 6.0726 -2.3073 -4.0857 25 6 5.4851 -1.1495 -4.5731 26 6 4.3055 -0.7038 -4.0083 27 7 3.7423 -1.3625 -3.0141 28 1 -0.4851 0.8400 -0.0004 29 1 3.8752 -0.7523 0.9278 30 1 3.8746 -0.6111 -0.8466 31 1 2.4805 -3.2273 1.1839 32 1 3.7306 -4.4402 0.8170 33 1 2.9529 -1.5269 3.1384 34 1 4.3373 -0.5969 5.6995 35 1 8.0203 -2.3999 6.3559 36 1 7.8406 -3.7291 4.3004 37 1 2.5110 -3.0904 -1.4980 38 1 3.8735 -4.2312 -1.3957 39 1 5.8860 -3.8719 -2.6292 40 1 6.9924 -2.6816 -4.5104 41 1 5.9414 -0.6058 -5.3871 42 1 3.8394 0.1947 -4.3849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204498134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:28 Heat of formation + Delta-G solvation = 95.567568 kcal Electronic energy + Delta-G solvation = -26576.370650 eV Core-core repulsion = 22909.596097 eV Total energy + Delta-G solvation = -3666.774553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40457 -39.88967 -38.84578 -37.01584 -32.89451 -32.48189 -32.14406 -31.69592 -31.38629 -29.86294 -27.94811 -26.62071 -24.43074 -23.48205 -23.14314 -22.56008 -21.78319 -20.99714 -19.84893 -17.68795 -17.22854 -16.55406 -16.32677 -16.21972 -15.84198 -15.72767 -15.17857 -14.92102 -14.52146 -14.30006 -14.12594 -13.94488 -13.30849 -13.23317 -13.08699 -12.96082 -12.72787 -12.44138 -12.24098 -11.83249 -11.51289 -11.23765 -11.19209 -10.96465 -10.88382 -10.38268 -10.11299 -9.93902 -9.62732 -9.60197 -9.49994 -9.20545 -8.89911 -8.72396 -8.54186 -8.03396 -7.43399 -6.08665 -4.06726 0.85363 1.39393 1.42182 1.60800 2.55621 2.81441 3.31306 3.37706 3.42617 3.87166 4.09220 4.42637 4.43727 4.55678 4.66611 4.77996 4.97014 5.05999 5.06993 5.12803 5.20326 5.27640 5.32031 5.41585 5.43613 5.57854 5.71727 5.76271 5.88176 5.92420 5.99997 6.03330 6.08447 6.27277 6.30585 6.41569 6.58027 6.58651 6.65145 6.82633 7.00055 7.14306 7.30719 7.50127 7.81666 7.85512 8.00137 8.40550 8.49225 8.88747 9.55977 11.04078 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004493 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.713326 B = 6230.962740 C = 7730.929224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.083 3.917 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.148 3.852 10 N -0.528 5.528 11 C 0.126 3.874 12 C 0.067 3.933 13 C -0.182 4.182 14 C -0.178 4.178 15 C 0.156 3.844 16 N -0.498 5.498 17 C 0.097 3.903 18 C -0.159 4.159 19 C 0.082 3.918 20 O -0.184 6.184 21 C 0.104 3.896 22 C 0.154 3.846 23 C -0.162 4.162 24 C -0.084 4.084 25 C -0.186 4.186 26 C 0.096 3.904 27 N -0.449 5.449 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.554 -7.009 0.150 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.119 4.119 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.092 0.908 9 C 0.022 3.978 10 N -0.252 5.252 11 C -0.002 4.002 12 C 0.019 3.981 13 C -0.203 4.203 14 C -0.181 4.181 15 C -0.006 4.006 16 N -0.208 5.208 17 C -0.054 4.054 18 C -0.180 4.180 19 C 0.027 3.973 20 O -0.084 6.084 21 C -0.024 4.024 22 C 0.016 3.984 23 C -0.183 4.183 24 C -0.110 4.110 25 C -0.206 4.206 26 C -0.062 4.062 27 N -0.157 5.157 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.431 -6.342 1.113 14.000 hybrid contribution 0.239 0.440 -1.305 1.397 sum 12.669 -5.903 -0.191 13.978 Atomic orbital electron populations 1.69904 1.06245 1.26863 1.50635 1.24768 0.94437 0.98763 0.93964 0.86911 0.80335 0.84134 0.78697 1.20057 1.21574 1.19264 1.21381 0.89960 0.94388 1.51852 0.90809 1.20343 0.95142 0.84884 0.97423 1.62435 1.58950 1.04520 0.99246 1.20644 0.96967 0.97059 0.85546 1.22569 0.82862 0.95641 0.96995 1.22403 1.01558 1.02372 0.93980 1.21068 0.96872 1.01254 0.98938 1.22306 0.94340 0.95365 0.88616 1.67740 1.01833 1.18657 1.32613 1.22411 0.97501 0.91914 0.93597 1.20914 0.96576 1.04776 0.95700 1.19770 0.95974 0.94654 0.86907 1.83924 1.33145 1.57377 1.33909 1.20883 0.99904 0.95143 0.86479 1.21170 0.91531 0.91155 0.94585 1.21940 0.96631 1.01923 0.97768 1.21463 0.99149 0.94795 0.95640 1.22065 0.98157 0.98123 1.02297 1.22820 0.92579 0.98707 0.92089 1.67760 1.32992 1.06178 1.08812 0.92788 0.95516 0.94214 0.88413 0.90311 0.81267 0.82157 0.82079 0.84357 0.90595 0.90840 0.85202 0.85516 0.85525 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.87 21.63 27.38 -169.99 -4.65 16.97 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.56 6.67 56.52 0.38 -6.18 16 7 C -0.54 -13.89 7.89 -34.44 -0.27 -14.16 16 8 H 0.07 2.02 6.20 -52.49 -0.33 1.70 16 9 C 0.15 3.43 3.77 -4.98 -0.02 3.41 16 10 N -0.53 -10.21 4.64 -238.96 -1.11 -11.32 16 11 C 0.13 2.17 5.32 -4.98 -0.03 2.14 16 12 C 0.07 1.18 6.24 -35.79 -0.22 0.96 16 13 C -0.18 -3.24 9.97 -37.68 -0.38 -3.61 16 14 C -0.18 -2.96 6.44 -105.19 -0.68 -3.64 16 15 C 0.16 2.34 11.26 -17.24 -0.19 2.14 16 16 N -0.50 -7.24 10.35 -13.06 -0.14 -7.37 16 17 C 0.10 1.19 11.14 -17.53 -0.20 1.00 16 18 C -0.16 -2.06 10.13 -39.40 -0.40 -2.46 16 19 C 0.08 1.33 7.49 -38.25 -0.29 1.05 16 20 O -0.18 -3.18 10.57 4.85 0.05 -3.13 16 21 C 0.10 1.84 5.09 -4.97 -0.03 1.82 16 22 C 0.15 2.73 5.70 -82.58 -0.47 2.26 16 23 C -0.16 -2.34 9.72 -39.44 -0.38 -2.73 16 24 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 25 C -0.19 -2.45 10.11 -39.44 -0.40 -2.85 16 26 C 0.10 1.55 11.18 -17.55 -0.20 1.36 16 27 N -0.45 -8.84 8.77 -9.47 -0.08 -8.92 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.65 6.07 -51.93 -0.32 0.34 16 30 H 0.04 0.99 5.35 -51.93 -0.28 0.71 16 31 H 0.10 1.83 6.13 -51.93 -0.32 1.51 16 32 H 0.08 1.14 7.80 -51.93 -0.41 0.73 16 33 H 0.17 3.07 8.06 -52.49 -0.42 2.64 16 34 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 37 H 0.08 1.54 6.60 -51.93 -0.34 1.20 16 38 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -32.10 352.32 -9.42 -41.51 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.93 Total: 5.15 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.64 Total: -12.57 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.55 Total: -53.24 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: 0.05 Total: -3.13 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.10 -9.42 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204498134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.081 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds