Wall clock time and date at job start Tue Mar 31 2020 14:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99693 * 2 1 4 4 H 1.48500 * 109.46670 * 269.99948 * 3 2 1 5 5 H 1.48500 * 109.47082 * 30.00043 * 3 2 1 6 6 H 1.48500 * 109.46893 * 150.00034 * 3 2 1 7 7 C 1.37875 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00130 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47376 * 184.58964 * 9 7 2 11 11 C 1.46900 * 111.00236 * 299.15863 * 10 9 7 12 12 C 1.50700 * 109.46930 * 287.58803 * 11 10 9 13 13 C 1.34037 * 124.91493 * 94.12738 * 12 11 10 14 14 C 1.46628 * 106.17739 * 179.86390 * 13 12 11 15 15 C 1.39144 * 135.25520 * 180.08993 * 14 13 12 16 16 N 1.31764 * 120.09427 * 180.30484 * 15 14 13 17 17 C 1.32248 * 122.11310 * 0.02562 * 16 15 14 18 18 C 1.37801 * 121.51847 * 0.02562 * 17 16 15 19 19 C 1.39156 * 118.91867 * 359.97438 * 18 17 16 20 20 O 1.34369 * 134.63912 * 180.02562 * 19 18 17 21 21 C 1.46905 * 111.00110 * 63.10861 * 10 9 7 22 22 C 1.50704 * 109.46675 * 66.04871 * 21 10 9 23 23 C 1.38228 * 119.61751 * 94.98357 * 22 21 10 24 24 C 1.38624 * 119.15876 * 179.78808 * 23 22 21 25 25 C 1.38678 * 118.41936 * 0.47246 * 24 23 22 26 26 C 1.38174 * 119.16373 * 359.50003 * 25 24 23 27 27 N 1.31857 * 119.61612 * 274.99525 * 22 21 10 28 28 H 0.96999 * 120.00616 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46750 * 64.59032 * 9 7 2 30 30 H 1.09002 * 109.47606 * 304.59095 * 9 7 2 31 31 H 1.09003 * 109.47303 * 47.57955 * 11 10 9 32 32 H 1.08998 * 109.47581 * 167.58815 * 11 10 9 33 33 H 1.07997 * 126.91020 * 0.02562 * 13 12 11 34 34 H 1.08005 * 119.95477 * 0.30427 * 15 14 13 35 35 H 1.07997 * 119.24349 * 179.97438 * 17 16 15 36 36 H 1.08006 * 120.54239 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46689 * 306.04886 * 21 10 9 38 38 H 1.08997 * 109.47431 * 186.04491 * 21 10 9 39 39 H 1.07998 * 120.42088 * 359.97438 * 23 22 21 40 40 H 1.08001 * 120.79080 * 180.22886 * 24 23 22 41 41 H 1.08001 * 120.41530 * 179.78671 * 25 24 23 42 42 H 1.08000 * 119.61927 * 180.25221 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5745 -0.1101 11 6 3.5473 -3.3864 1.0268 12 6 4.3032 -2.9821 2.2663 13 6 3.8781 -2.0833 3.1652 14 6 4.9201 -2.0103 4.1941 15 6 5.0964 -1.2924 5.3730 16 7 6.1880 -1.4599 6.0916 17 6 7.1446 -2.2993 5.7320 18 6 7.0501 -3.0479 4.5789 19 6 5.9190 -2.9127 3.7796 20 8 5.5058 -3.4659 2.6269 21 6 3.5915 -3.1784 -1.3851 22 6 4.2753 -2.4637 -2.5221 23 6 5.4540 -2.9699 -3.0369 24 6 6.0726 -2.3073 -4.0857 25 6 5.4851 -1.1495 -4.5731 26 6 4.3055 -0.7038 -4.0083 27 7 3.7423 -1.3625 -3.0141 28 1 -0.4851 0.8400 -0.0004 29 1 3.8752 -0.7523 0.9278 30 1 3.8746 -0.6111 -0.8466 31 1 2.4805 -3.2273 1.1839 32 1 3.7306 -4.4402 0.8170 33 1 2.9529 -1.5269 3.1384 34 1 4.3373 -0.5969 5.6995 35 1 8.0203 -2.3999 6.3559 36 1 7.8406 -3.7291 4.3004 37 1 2.5110 -3.0904 -1.4980 38 1 3.8735 -4.2312 -1.3957 39 1 5.8860 -3.8719 -2.6292 40 1 6.9924 -2.6816 -4.5104 41 1 5.9414 -0.6058 -5.3871 42 1 3.8394 0.1947 -4.3849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204498134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:27 Heat of formation + Delta-G solvation = 74.505759 kcal Electronic energy + Delta-G solvation = -26577.283959 eV Core-core repulsion = 22909.596097 eV Total energy + Delta-G solvation = -3667.687862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.65042 -41.08564 -39.97957 -38.54098 -34.55782 -34.13848 -33.29262 -32.90154 -32.54523 -31.20639 -29.72152 -27.88678 -26.03161 -24.73484 -24.27596 -23.92597 -23.01057 -22.27296 -21.44912 -19.19509 -18.84609 -17.90985 -17.56237 -17.43100 -17.06331 -16.83591 -16.47519 -16.36892 -16.10624 -15.87062 -15.44666 -15.19189 -14.55610 -14.46701 -14.40770 -14.27674 -14.14042 -13.99458 -13.55363 -13.33534 -12.99695 -12.88473 -12.80012 -12.39811 -12.27004 -12.22126 -11.87916 -11.69098 -11.25230 -10.75784 -10.72683 -10.64223 -10.38412 -10.11118 -9.88560 -9.30243 -9.05752 -8.26158 -6.24646 -0.28019 0.23098 0.27748 0.52432 1.24168 1.29576 1.31757 1.40071 1.56232 2.34493 2.75914 2.86862 3.12435 3.26437 3.42967 3.46781 3.60253 3.68004 3.89961 3.95968 4.09608 4.10432 4.26962 4.30055 4.32161 4.36943 4.51583 4.54395 4.66853 4.74458 4.76947 4.86915 4.90662 5.00887 5.03248 5.08068 5.15086 5.29525 5.34417 5.36674 5.48501 5.54209 5.91672 5.97230 6.08327 6.22253 6.30313 6.75812 6.91523 7.31211 7.40054 8.89766 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004493 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.713326 B = 6230.962740 C = 7730.929224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.031 3.969 3 Si 0.924 3.076 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.048 0.952 9 C 0.167 3.833 10 N -0.523 5.523 11 C 0.128 3.872 12 C 0.059 3.941 13 C -0.197 4.197 14 C -0.200 4.200 15 C 0.148 3.852 16 N -0.509 5.509 17 C 0.104 3.896 18 C -0.153 4.153 19 C 0.065 3.935 20 O -0.188 6.188 21 C 0.107 3.893 22 C 0.121 3.879 23 C -0.158 4.158 24 C -0.078 4.078 25 C -0.172 4.172 26 C 0.068 3.932 27 N -0.505 5.505 28 H 0.262 0.738 29 H 0.014 0.986 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.206 0.794 36 H 0.174 0.826 37 H 0.038 0.962 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.774 -7.981 0.002 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.167 4.167 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.066 0.934 9 C 0.039 3.961 10 N -0.246 5.246 11 C 0.001 3.999 12 C 0.011 3.989 13 C -0.219 4.219 14 C -0.203 4.203 15 C -0.014 4.014 16 N -0.219 5.219 17 C -0.046 4.046 18 C -0.173 4.173 19 C 0.010 3.990 20 O -0.088 6.088 21 C -0.021 4.021 22 C -0.017 4.017 23 C -0.178 4.178 24 C -0.104 4.104 25 C -0.191 4.191 26 C -0.089 4.089 27 N -0.215 5.215 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.171 0.829 34 H 0.191 0.809 35 H 0.223 0.777 36 H 0.191 0.809 37 H 0.056 0.944 38 H 0.130 0.870 39 H 0.174 0.826 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 16.666 -7.322 0.970 18.229 hybrid contribution -0.965 0.646 -1.232 1.693 sum 15.701 -6.676 -0.262 17.063 Atomic orbital electron populations 1.70021 1.07660 1.27445 1.53218 1.25439 0.95005 1.01802 0.94493 0.86067 0.79366 0.80962 0.78585 1.19981 1.21152 1.18765 1.21552 0.91558 0.93083 1.49113 0.93351 1.19973 0.92695 0.87423 0.95999 1.62397 1.58419 1.03072 1.00696 1.20612 0.95691 0.98604 0.84991 1.22454 0.83467 0.95976 0.97011 1.22375 1.01622 1.02658 0.95218 1.21154 0.96938 1.02637 0.99593 1.22549 0.95110 0.95505 0.88218 1.67828 1.02061 1.19396 1.32632 1.23193 0.97833 0.90084 0.93496 1.21388 0.96090 1.04884 0.94899 1.20309 0.97014 0.94785 0.86890 1.83882 1.32675 1.57598 1.34604 1.20944 0.97828 0.97320 0.86001 1.21208 0.93393 0.91678 0.95378 1.22203 0.95194 1.02575 0.97803 1.21976 1.00030 0.93922 0.94440 1.22427 0.96472 0.98101 1.02129 1.23074 0.94299 0.99219 0.92344 1.67594 1.35215 1.07831 1.10864 0.92906 0.96771 0.95356 0.90723 0.86917 0.82894 0.80944 0.77730 0.80878 0.94417 0.87022 0.82603 0.81252 0.81878 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 2 C 0.03 1.78 5.47 84.65 0.46 2.24 16 3 Si 0.92 46.15 27.38 68.60 1.88 48.03 16 4 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.26 -12.81 6.67 99.48 0.66 -12.14 16 7 C -0.51 -28.01 7.89 25.60 0.20 -27.81 16 8 H 0.05 2.84 6.20 -2.91 -0.02 2.83 16 9 C 0.17 7.95 3.77 85.56 0.32 8.27 16 10 N -0.52 -20.49 4.64 -909.95 -4.23 -24.71 16 11 C 0.13 4.53 5.32 85.56 0.45 4.99 16 12 C 0.06 2.10 6.24 24.73 0.15 2.26 16 13 C -0.20 -7.33 9.97 23.50 0.23 -7.09 16 14 C -0.20 -6.66 6.44 -20.23 -0.13 -6.79 16 15 C 0.15 4.35 11.26 84.92 0.96 5.31 16 16 N -0.51 -13.68 10.35 -195.23 -2.02 -15.70 16 17 C 0.10 2.20 11.14 84.53 0.94 3.14 16 18 C -0.15 -3.45 10.13 22.39 0.23 -3.22 16 19 C 0.06 2.01 7.49 23.13 0.17 2.19 16 20 O -0.19 -6.32 10.57 -5.54 -0.06 -6.38 16 21 C 0.11 3.83 5.09 85.56 0.44 4.26 16 22 C 0.12 4.26 5.70 42.55 0.24 4.50 16 23 C -0.16 -4.13 9.72 22.36 0.22 -3.91 16 24 C -0.08 -1.67 10.18 22.47 0.23 -1.44 16 25 C -0.17 -4.00 10.11 22.36 0.23 -3.78 16 26 C 0.07 2.18 11.18 84.67 0.95 3.12 16 27 N -0.51 -20.31 8.77 -183.89 -1.61 -21.92 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.01 0.72 6.07 -2.39 -0.01 0.70 16 30 H 0.03 1.44 5.35 -2.39 -0.01 1.43 16 31 H 0.07 2.99 6.13 -2.39 -0.01 2.97 16 32 H 0.11 3.15 7.80 -2.39 -0.02 3.13 16 33 H 0.15 6.02 8.06 -2.91 -0.02 6.00 16 34 H 0.17 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.21 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.04 1.62 6.60 -2.39 -0.02 1.61 16 38 H 0.11 3.04 7.76 -2.39 -0.02 3.02 16 39 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 40 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -74.12 352.32 1.56 -72.56 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.01 Total: 19.66 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 6.30 Total: -13.76 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -7.56 Total: -120.10 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.06 Total: -6.38 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.03 kcal Total: -74.12 1.56 -72.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204498134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.061 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds