Wall clock time and date at job start Tue Mar 31 2020 14:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48501 * 109.47473 * 270.01076 * 3 2 1 5 5 H 1.48504 * 109.46636 * 30.00811 * 3 2 1 6 6 H 1.48499 * 109.47027 * 150.00477 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00391 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99406 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46717 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.42894 * 109.47136 * 179.97438 * 11 10 9 13 13 C 1.42904 * 114.00026 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.27084 * 332.09568 * 13 12 11 15 15 C 1.54598 * 110.30453 * 94.28592 * 13 12 11 16 16 C 1.54934 * 102.91766 * 140.87490 * 15 13 12 17 17 N 1.48531 * 103.23044 * 322.58773 * 16 15 13 18 18 C 1.46901 * 111.00325 * 159.72208 * 17 16 15 19 19 C 1.50700 * 109.46960 * 52.60087 * 18 17 16 20 20 C 1.38240 * 119.98843 * 270.30172 * 19 18 17 21 21 C 1.38212 * 120.01559 * 180.26185 * 20 19 18 22 22 C 1.38361 * 119.98341 * 359.43561 * 21 20 19 23 23 Cl 1.73605 * 120.01019 * 180.25981 * 22 21 20 24 24 C 1.38346 * 119.97282 * 0.28612 * 22 21 20 25 25 C 1.38211 * 119.98791 * 359.97438 * 24 22 21 26 26 C 1.47896 * 105.82148 * 39.20409 * 17 16 15 27 27 H 0.96998 * 119.99707 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47468 * 59.99925 * 9 7 2 29 29 H 1.09000 * 109.47491 * 299.99551 * 9 7 2 30 30 H 1.08996 * 109.47510 * 60.00470 * 10 9 7 31 31 H 1.09001 * 109.47442 * 299.99817 * 10 9 7 32 32 H 1.08996 * 109.46716 * 59.99796 * 11 10 9 33 33 H 1.09001 * 109.46678 * 300.00097 * 11 10 9 34 34 H 1.08995 * 110.72296 * 259.22992 * 15 13 12 35 35 H 1.08997 * 110.72530 * 22.33706 * 15 13 12 36 36 H 1.08994 * 110.66829 * 204.14858 * 16 15 13 37 37 H 1.09004 * 110.66758 * 81.02189 * 16 15 13 38 38 H 1.08997 * 109.47151 * 292.60084 * 18 17 16 39 39 H 1.08996 * 109.47060 * 172.59959 * 18 17 16 40 40 H 1.08004 * 119.99413 * 359.97438 * 20 19 18 41 41 H 1.08002 * 120.01126 * 179.72142 * 21 20 19 42 42 H 1.08002 * 120.00319 * 180.02562 * 24 22 21 43 43 H 1.08003 * 119.99330 * 179.97438 * 25 24 22 44 44 H 1.08997 * 109.91494 * 94.02528 * 26 17 16 45 45 H 1.08999 * 109.91957 * 215.12236 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5516 -2.6366 -0.0022 12 8 6.0279 -3.9839 -0.0027 13 6 7.4524 -4.0968 -0.0033 14 1 7.9001 -3.2257 -0.4818 15 6 7.9792 -4.2475 1.4423 16 6 9.1197 -5.2849 1.2890 17 7 8.5893 -6.2248 0.2684 18 6 9.6761 -6.9873 -0.3605 19 6 10.5192 -7.6344 0.7078 20 6 11.6029 -6.9584 1.2368 21 6 12.3797 -7.5536 2.2127 22 6 12.0657 -8.8216 2.6687 23 17 13.0371 -9.5671 3.8993 24 6 10.9777 -9.4953 2.1430 25 6 10.2048 -8.9013 1.1633 26 6 7.8862 -5.3856 -0.7259 27 1 -0.4849 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6801 -0.8911 30 1 3.6579 -3.1498 -0.8925 31 1 3.6585 -3.1510 0.8875 32 1 5.9148 -2.1235 0.8882 33 1 5.9149 -2.1220 -0.8918 34 1 8.3680 -3.2987 1.8120 35 1 7.1967 -4.6248 2.1006 36 1 9.2989 -5.8017 2.2317 37 1 10.0312 -4.8048 0.9329 38 1 10.2952 -6.3149 -0.9544 39 1 9.2535 -7.7572 -1.0059 40 1 11.8452 -5.9668 0.8840 41 1 13.2290 -7.0272 2.6227 42 1 10.7319 -10.4850 2.4988 43 1 9.3556 -9.4273 0.7526 44 1 8.5589 -5.1418 -1.5481 45 1 7.0119 -5.9139 -1.1059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205671830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:36 Heat of formation + Delta-G solvation = -52.360690 kcal Electronic energy + Delta-G solvation = -23708.865539 eV Core-core repulsion = 20136.783829 eV Total energy + Delta-G solvation = -3572.081710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.93274 -39.88137 -38.17728 -37.36010 -35.82693 -34.02210 -33.27522 -32.05049 -30.90049 -29.72240 -28.45340 -26.31373 -24.51942 -23.87713 -22.80901 -22.15233 -21.61954 -21.54956 -18.98752 -18.08442 -17.88548 -17.16575 -16.81399 -16.54187 -16.39042 -16.21551 -15.41431 -15.31401 -14.88216 -14.77596 -14.67287 -14.50859 -14.40531 -14.31045 -13.66547 -13.43349 -13.28603 -12.98539 -12.94328 -12.59470 -12.48417 -12.36391 -12.33479 -12.16245 -12.09389 -11.81438 -11.74906 -11.63980 -11.62052 -11.52522 -11.30102 -10.76581 -10.43434 -9.99214 -9.68331 -9.30754 -8.29237 -6.34698 0.10803 0.33748 1.15803 1.36991 1.39704 1.51650 2.37080 2.52892 2.72753 3.05690 3.14643 3.56963 3.70193 3.79785 3.87740 3.95858 4.08737 4.18335 4.20878 4.28593 4.31495 4.37845 4.45218 4.56026 4.60295 4.64215 4.67308 4.73930 4.79546 4.87282 4.88190 4.94089 5.00119 5.02972 5.05757 5.18162 5.22271 5.26586 5.46893 5.55779 5.56020 5.64270 5.80536 5.86311 6.03043 6.26957 6.40626 6.73662 7.29723 8.87832 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.001687 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.450266 B =16593.055591 C =16732.358577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.538 4.538 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.096 4.096 11 C 0.072 3.928 12 O -0.397 6.397 13 C 0.071 3.929 14 H 0.083 0.917 15 C -0.147 4.147 16 C 0.046 3.954 17 N -0.523 5.523 18 C 0.085 3.915 19 C -0.082 4.082 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.047 4.047 23 Cl -0.078 7.078 24 C -0.119 4.119 25 C -0.093 4.093 26 C 0.041 3.959 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.950 -16.129 1.965 36.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.134 4.134 11 C -0.004 4.004 12 O -0.316 6.316 13 C 0.013 3.987 14 H 0.101 0.899 15 C -0.186 4.186 16 C -0.081 4.081 17 N -0.248 5.248 18 C -0.042 4.042 19 C -0.082 4.082 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.074 4.074 23 Cl -0.049 7.049 24 C -0.137 4.137 25 C -0.112 4.112 26 C -0.086 4.086 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.093 0.907 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 32.412 -16.641 2.288 36.506 hybrid contribution 0.168 1.130 -0.092 1.147 sum 32.580 -15.511 2.196 36.151 Atomic orbital electron populations 1.70086 1.08469 1.28275 1.52476 1.26110 0.95711 1.03839 0.93911 0.85569 0.79555 0.77608 0.79373 1.18888 1.20991 1.16517 1.21490 0.92221 0.93125 1.50806 0.95459 1.19436 0.93865 0.94036 0.97061 1.21275 0.93319 0.97686 1.01094 1.22553 0.94236 0.82994 1.00621 1.87960 1.21467 1.27138 1.95045 1.23138 0.81172 0.98363 0.96055 0.89938 1.23033 0.98580 1.00012 0.96951 1.23153 0.96002 0.92448 0.96507 1.64869 1.24364 1.23449 1.12103 1.21308 0.91038 0.97985 0.93890 1.19950 0.95696 0.94722 0.97856 1.21250 0.94310 1.00350 0.96006 1.21229 1.01037 0.93459 0.97760 1.21134 0.95741 0.95443 0.95041 1.98374 1.70565 1.82398 1.53575 1.21242 0.94110 1.01064 0.97316 1.21202 0.99011 0.95013 0.95953 1.22904 0.99327 0.92433 0.93967 0.92441 0.95620 0.95576 0.93205 0.93518 0.92719 0.92184 0.89516 0.91718 0.90303 0.91634 0.91980 0.88925 0.83631 0.83712 0.84067 0.84110 0.90731 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.96 43.89 27.47 68.60 1.88 45.78 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.10 6.54 99.48 0.65 -9.44 16 7 C -0.54 -31.86 9.66 25.60 0.25 -31.61 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.10 -3.93 5.52 30.60 0.17 -3.76 16 11 C 0.07 2.26 5.78 71.99 0.42 2.68 16 12 O -0.40 -12.11 9.94 -148.98 -1.48 -13.59 16 13 C 0.07 1.54 3.48 31.47 0.11 1.65 16 14 H 0.08 1.51 7.81 -2.39 -0.02 1.49 16 15 C -0.15 -2.90 6.80 31.80 0.22 -2.69 16 16 C 0.05 0.73 4.96 86.65 0.43 1.16 16 17 N -0.52 -9.07 5.39 -887.62 -4.78 -13.85 16 18 C 0.08 1.06 5.19 85.56 0.44 1.50 16 19 C -0.08 -1.05 4.60 -19.86 -0.09 -1.14 16 20 C -0.10 -1.12 8.32 22.26 0.19 -0.94 16 21 C -0.12 -1.42 9.83 22.29 0.22 -1.20 16 22 C -0.05 -0.67 6.32 22.32 0.14 -0.52 16 23 Cl -0.08 -1.11 28.96 -2.72 -0.08 -1.19 16 24 C -0.12 -1.62 9.83 22.29 0.22 -1.40 16 25 C -0.09 -1.25 9.70 22.26 0.22 -1.03 16 26 C 0.04 0.77 6.51 86.45 0.56 1.34 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 29 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.08 1.33 7.72 -2.39 -0.02 1.31 16 37 H 0.07 0.77 7.07 -2.39 -0.02 0.75 16 38 H 0.06 0.61 7.76 -2.39 -0.02 0.59 16 39 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 40 H 0.15 1.07 7.36 -2.91 -0.02 1.05 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.07 1.05 7.57 -2.39 -0.02 1.03 16 45 H 0.08 1.76 7.97 -2.39 -0.02 1.74 16 Total: -1.00 -69.22 377.82 0.81 -68.41 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.90 Total: 10.41 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.07 Total: -35.63 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -4.48 Total: -74.19 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.48 Total: -13.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -69.22 0.81 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.054 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds