Wall clock time and date at job start Tue Mar 31 2020 14:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99629 * 2 1 4 4 H 1.48506 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47237 * 300.00033 * 3 2 1 6 6 H 1.48506 * 109.46867 * 60.00557 * 3 2 1 7 7 C 1.37876 * 120.00791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99520 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47453 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47515 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.46760 * 180.02562 * 11 10 9 13 13 C 1.42906 * 113.99457 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.87619 * 32.39945 * 13 12 11 15 15 C 1.55132 * 110.99249 * 268.54605 * 13 12 11 16 16 C 1.54317 * 103.02315 * 206.25603 * 15 13 12 17 17 N 1.47450 * 107.22968 * 22.28601 * 16 15 13 18 18 C 1.46895 * 110.99823 * 123.26033 * 17 16 15 19 19 C 1.50696 * 109.47666 * 69.87440 * 18 17 16 20 20 C 1.38248 * 119.98515 * 269.72517 * 19 18 17 21 21 C 1.38212 * 120.01163 * 180.27537 * 20 19 18 22 22 C 1.38346 * 119.98889 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.01319 * 179.97438 * 22 21 20 24 24 C 1.38351 * 119.97399 * 359.97438 * 22 21 20 25 25 C 1.38208 * 119.98880 * 0.02562 * 24 22 21 26 26 C 1.47845 * 108.56716 * 0.98590 * 17 16 15 27 27 H 0.97001 * 120.00768 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47286 * 60.00186 * 9 7 2 29 29 H 1.08999 * 109.47591 * 300.00243 * 9 7 2 30 30 H 1.09008 * 109.46933 * 59.99727 * 10 9 7 31 31 H 1.09004 * 109.47214 * 300.00278 * 10 9 7 32 32 H 1.09003 * 109.47220 * 60.00388 * 11 10 9 33 33 H 1.08999 * 109.47128 * 299.99869 * 11 10 9 34 34 H 1.09005 * 110.70565 * 87.87170 * 15 13 12 35 35 H 1.09005 * 110.70788 * 324.64122 * 15 13 12 36 36 H 1.08993 * 109.89109 * 262.87994 * 16 15 13 37 37 H 1.09001 * 110.02916 * 141.76303 * 16 15 13 38 38 H 1.09000 * 109.47142 * 309.86797 * 18 17 16 39 39 H 1.09005 * 109.47121 * 189.87540 * 18 17 16 40 40 H 1.08003 * 119.99126 * 0.27414 * 20 19 18 41 41 H 1.07996 * 120.00384 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.00806 * 179.97438 * 24 22 21 43 43 H 1.07995 * 119.99863 * 180.02562 * 25 24 22 44 44 H 1.09002 * 110.36940 * 94.73498 * 26 17 16 45 45 H 1.08991 * 110.37389 * 217.07471 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 8 2.4092 -6.0731 -0.0018 13 6 1.7947 -7.3633 -0.0007 14 1 0.8507 -7.3444 -0.5454 15 6 1.5904 -7.8803 1.4476 16 6 1.5920 -9.4136 1.2730 17 7 2.2980 -9.7088 0.0126 18 6 3.4316 -10.6140 0.2439 19 6 2.9158 -11.9846 0.5993 20 6 2.6874 -12.3153 1.9221 21 6 2.2198 -13.5741 2.2492 22 6 1.9797 -14.5031 1.2526 23 17 1.3929 -16.0846 1.6628 24 6 2.2074 -14.1712 -0.0711 25 6 2.6750 -12.9122 -0.3970 26 6 2.7509 -8.4338 -0.5832 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.8728 -3.6046 0.8878 31 1 2.8714 -3.6039 -0.8923 32 1 0.8529 -5.0448 -0.8905 33 1 0.8549 -5.0450 0.8895 34 1 0.6356 -7.5389 1.8477 35 1 2.4132 -7.5647 2.0892 36 1 0.5675 -9.7817 1.2191 37 1 2.1115 -9.8839 2.1079 38 1 4.0409 -10.2314 1.0627 39 1 4.0368 -10.6768 -0.6606 40 1 2.8745 -11.5898 2.7000 41 1 2.0410 -13.8321 3.2825 42 1 2.0205 -14.8962 -0.8495 43 1 2.8524 -12.6528 -1.4303 44 1 3.7797 -8.2228 -0.2912 45 1 2.6636 -8.4702 -1.6690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205671833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:40 Heat of formation + Delta-G solvation = -55.218089 kcal Electronic energy + Delta-G solvation = -23539.545137 eV Core-core repulsion = 19967.339521 eV Total energy + Delta-G solvation = -3572.205616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89518 -39.90050 -38.22483 -37.36740 -35.84887 -33.93481 -33.14780 -32.04022 -30.82733 -29.65830 -28.26498 -26.30733 -24.85787 -23.82933 -22.71188 -22.37956 -21.75843 -21.44068 -18.64608 -18.05941 -17.85678 -17.24715 -16.67922 -16.53228 -16.44647 -16.33466 -15.66967 -15.23787 -14.79505 -14.72365 -14.47760 -14.37054 -14.27996 -14.18490 -13.84755 -13.57069 -13.56328 -12.96135 -12.73782 -12.65885 -12.55182 -12.39561 -12.37257 -12.20260 -12.08109 -11.99513 -11.73336 -11.66840 -11.56617 -11.44981 -11.18366 -10.57328 -10.47111 -9.97597 -9.64034 -9.34176 -8.21746 -6.32780 0.13085 0.35579 1.17065 1.40680 1.40801 1.54514 2.36154 2.44349 2.71866 3.11813 3.20759 3.59672 3.68141 3.81050 3.88296 3.97974 4.03536 4.14692 4.17481 4.27412 4.29362 4.38037 4.45933 4.54953 4.59109 4.62475 4.70946 4.78920 4.83376 4.85540 4.90420 4.95732 5.02832 5.06679 5.15565 5.17374 5.24027 5.28258 5.49086 5.56517 5.69205 5.81899 5.82265 5.86457 5.99825 6.18959 6.33266 6.83197 7.36603 8.90383 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.049139 B = 0.001543 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.680676 B =18140.390883 C =18314.566454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.096 4.096 11 C 0.076 3.924 12 O -0.391 6.391 13 C 0.069 3.931 14 H 0.076 0.924 15 C -0.165 4.165 16 C 0.048 3.952 17 N -0.524 5.524 18 C 0.087 3.913 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.047 4.047 23 Cl -0.078 7.078 24 C -0.117 4.117 25 C -0.090 4.090 26 C 0.054 3.946 27 H 0.264 0.736 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.058 0.942 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -32.279 2.344 32.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.134 4.134 11 C 0.000 4.000 12 O -0.310 6.310 13 C 0.010 3.990 14 H 0.094 0.906 15 C -0.203 4.203 16 C -0.080 4.080 17 N -0.249 5.249 18 C -0.040 4.040 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.074 4.074 23 Cl -0.049 7.049 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.074 4.074 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.076 0.924 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.218 -32.533 2.036 33.012 hybrid contribution 0.166 1.233 0.679 1.417 sum 5.385 -31.300 2.715 31.876 Atomic orbital electron populations 1.70087 1.07739 1.27813 1.51546 1.25969 0.95803 1.03345 0.94596 0.85375 0.79024 0.78640 0.77864 1.18695 1.20237 1.20271 1.21690 0.93594 0.92275 1.50764 0.92232 1.18936 0.94265 0.92543 0.95327 1.21391 0.98585 0.92133 1.01265 1.22493 0.91614 0.85949 0.99954 1.87848 1.34236 1.13926 1.95004 1.23345 0.96668 0.82921 0.96053 0.90584 1.23265 1.03032 0.96621 0.97404 1.22804 1.00318 0.93535 0.91301 1.63671 1.24691 1.11882 1.24655 1.21273 0.91558 0.89032 1.02126 1.19915 0.98893 0.95424 0.93414 1.21239 0.98629 0.96021 0.96428 1.21202 0.99858 0.92902 0.99593 1.21121 1.03534 0.87484 0.95276 1.98372 1.87145 1.25370 1.94043 1.21256 0.99793 0.97836 0.94696 1.21196 0.97409 0.91925 1.00337 1.22912 0.97497 0.86596 1.00373 0.92674 0.98440 0.98489 0.92826 0.92670 0.93237 0.93461 0.90409 0.91072 0.90276 0.90884 0.92814 0.88523 0.84124 0.83940 0.83821 0.83679 0.92381 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.55 -31.39 9.11 25.60 0.23 -31.15 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.10 -4.10 5.52 30.59 0.17 -3.93 16 11 C 0.08 2.68 5.82 71.98 0.42 3.10 16 12 O -0.39 -12.41 10.15 -148.98 -1.51 -13.93 16 13 C 0.07 1.67 3.48 31.98 0.11 1.78 16 14 H 0.08 1.84 7.90 -2.39 -0.02 1.82 16 15 C -0.16 -3.44 6.68 31.77 0.21 -3.22 16 16 C 0.05 0.80 6.27 86.64 0.54 1.35 16 17 N -0.52 -8.98 5.15 -890.11 -4.58 -13.56 16 18 C 0.09 1.18 4.75 85.56 0.41 1.59 16 19 C -0.08 -1.02 5.10 -19.86 -0.10 -1.12 16 20 C -0.10 -1.33 8.74 22.27 0.19 -1.13 16 21 C -0.12 -1.54 9.83 22.29 0.22 -1.33 16 22 C -0.05 -0.69 6.32 22.32 0.14 -0.54 16 23 Cl -0.08 -1.12 28.96 -2.72 -0.08 -1.20 16 24 C -0.12 -1.54 9.83 22.29 0.22 -1.33 16 25 C -0.09 -1.15 9.70 22.26 0.22 -0.94 16 26 C 0.05 1.07 6.42 86.77 0.56 1.62 16 27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.69 8.11 -2.39 -0.02 1.67 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.02 5.50 -2.39 -0.01 1.01 16 38 H 0.05 0.70 7.90 -2.39 -0.02 0.68 16 39 H 0.10 1.13 8.02 -2.38 -0.02 1.11 16 40 H 0.14 1.38 6.92 -2.91 -0.02 1.36 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.06 1.18 7.81 -2.39 -0.02 1.16 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -64.46 382.08 1.24 -63.22 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.95 Total: 8.57 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.15 Total: -33.19 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -4.30 Total: -69.78 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.51 Total: -13.93 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -64.46 1.24 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.999 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds