Wall clock time and date at job start Tue Mar 31 2020 14:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99765 * 2 1 4 4 H 1.48493 * 109.46893 * 269.99927 * 3 2 1 5 5 H 1.48507 * 109.46735 * 29.99699 * 3 2 1 6 6 H 1.48501 * 109.46973 * 149.99272 * 3 2 1 7 7 C 1.37877 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99841 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46728 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46726 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47017 * 179.97438 * 11 10 9 13 13 C 1.42901 * 114.00178 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.64377 * 328.30563 * 13 12 11 15 15 C 1.54600 * 110.72160 * 91.45384 * 13 12 11 16 16 C 1.53992 * 105.13729 * 140.32132 * 15 13 12 17 17 N 1.47903 * 107.05933 * 1.21929 * 16 15 13 18 18 C 1.46905 * 110.99954 * 214.16043 * 17 16 15 19 19 C 1.50704 * 109.47066 * 75.44339 * 18 17 16 20 20 C 1.38237 * 120.00572 * 266.12169 * 19 18 17 21 21 C 1.38218 * 120.01128 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.02693 * 359.97438 * 21 20 19 23 23 C 1.38186 * 120.01150 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.00387 * 86.14140 * 19 18 17 25 25 Cl 1.73596 * 120.01433 * 359.95810 * 24 19 18 26 26 C 1.48531 * 105.82121 * 334.67192 * 17 16 15 27 27 H 0.97000 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47211 * 59.99802 * 9 7 2 29 29 H 1.09003 * 109.46591 * 300.00184 * 9 7 2 30 30 H 1.08996 * 109.47201 * 59.99960 * 10 9 7 31 31 H 1.09000 * 109.46828 * 299.99376 * 10 9 7 32 32 H 1.08997 * 109.46864 * 59.99685 * 11 10 9 33 33 H 1.09003 * 109.46687 * 299.99737 * 11 10 9 34 34 H 1.08994 * 110.31204 * 21.39627 * 15 13 12 35 35 H 1.08998 * 110.38877 * 259.27346 * 15 13 12 36 36 H 1.09007 * 109.91398 * 241.86894 * 16 15 13 37 37 H 1.08991 * 109.92042 * 120.57803 * 16 15 13 38 38 H 1.08996 * 109.47100 * 315.44402 * 18 17 16 39 39 H 1.08991 * 109.46937 * 195.44262 * 18 17 16 40 40 H 1.07998 * 119.99354 * 0.04071 * 20 19 18 41 41 H 1.08005 * 119.98200 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.99054 * 179.72401 * 22 21 20 43 43 H 1.08003 * 120.00288 * 180.02562 * 23 22 21 44 44 H 1.08994 * 110.66782 * 157.63723 * 26 17 16 45 45 H 1.09005 * 110.67280 * 280.77632 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0281 -3.9835 0.0014 13 6 7.4526 -4.0963 0.0008 14 1 7.9039 -3.2618 -0.5357 15 6 7.9957 -4.1753 1.4462 16 6 9.1294 -5.2162 1.3934 17 7 9.2357 -5.6712 -0.0098 18 6 9.6143 -7.0891 -0.0762 19 6 8.4232 -7.9440 0.2725 20 6 8.2369 -8.3725 1.5735 21 6 7.1448 -9.1570 1.8933 22 6 6.2378 -9.5132 0.9124 23 6 6.4224 -9.0846 -0.3882 24 6 7.5163 -8.3004 -0.7094 25 17 7.7493 -7.7621 -2.3433 26 6 7.8952 -5.4497 -0.6100 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8910 29 1 3.8752 -0.6802 -0.8889 30 1 3.6587 -3.1501 -0.8892 31 1 3.6580 -3.1504 0.8908 32 1 5.9149 -2.1225 0.8909 33 1 5.9149 -2.1224 -0.8891 34 1 7.2113 -4.5044 2.1276 35 1 8.3857 -3.2067 1.7587 36 1 8.8890 -6.0600 2.0403 37 1 10.0677 -4.7594 1.7078 38 1 10.4205 -7.2834 0.6311 39 1 9.9505 -7.3285 -1.0850 40 1 8.9447 -8.0940 2.3402 41 1 7.0000 -9.4919 2.9099 42 1 5.3871 -10.1299 1.1621 43 1 5.7136 -9.3625 -1.1542 44 1 7.9669 -5.3767 -1.6952 45 1 7.2081 -6.2451 -0.3213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:44 Heat of formation + Delta-G solvation = -24.412472 kcal Electronic energy + Delta-G solvation = -24936.301391 eV Core-core repulsion = 21365.431607 eV Total energy + Delta-G solvation = -3570.869784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60751 -38.77783 -36.99989 -36.72038 -34.03605 -32.96168 -31.62721 -31.19490 -29.90221 -28.81229 -26.95780 -25.62579 -23.15667 -22.72028 -22.31791 -20.90620 -20.74820 -20.01136 -17.43165 -17.13767 -16.69447 -16.36319 -15.91854 -15.61337 -15.17284 -15.01023 -14.52073 -14.28335 -14.14340 -13.75818 -13.51267 -13.36942 -13.06527 -12.79476 -12.62930 -12.28782 -11.99753 -11.90095 -11.84708 -11.78065 -11.54910 -11.38841 -11.37410 -10.93445 -10.82665 -10.79409 -10.40281 -10.00282 -9.82750 -9.66142 -9.31337 -9.22490 -9.18184 -8.96110 -8.69326 -8.53121 -6.03285 -4.01431 0.77623 0.88583 1.84725 3.22825 3.31223 3.38327 3.41775 3.58378 4.12630 4.27482 4.38063 4.45736 4.53817 4.61685 4.68389 4.81115 4.95024 4.98272 5.13156 5.16375 5.26651 5.30265 5.41582 5.45016 5.54011 5.56698 5.63900 5.66059 5.77563 5.82623 5.84389 5.91909 5.98285 6.02297 6.05912 6.07723 6.41947 6.47837 6.54652 6.63059 6.69978 6.89229 7.29059 7.42259 7.55929 7.80482 8.55532 9.02049 9.58725 11.10199 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002675 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.525994 B =10464.513548 C =10897.875827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.083 3.917 14 H 0.072 0.928 15 C -0.156 4.156 16 C 0.032 3.968 17 N -0.500 5.500 18 C 0.081 3.919 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.022 4.022 25 Cl -0.061 7.061 26 C 0.029 3.971 27 H 0.263 0.737 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.091 0.909 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.409 -19.825 2.096 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.137 4.137 11 C -0.015 4.015 12 O -0.296 6.296 13 C 0.024 3.976 14 H 0.090 0.910 15 C -0.194 4.194 16 C -0.096 4.096 17 N -0.222 5.222 18 C -0.047 4.047 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.050 4.050 25 Cl -0.032 7.032 26 C -0.099 4.099 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.574 -19.495 1.664 29.873 hybrid contribution -0.190 0.730 0.374 0.842 sum 22.384 -18.764 2.038 29.279 Atomic orbital electron populations 1.69915 1.06285 1.26872 1.51190 1.25032 0.94750 0.99158 0.94591 0.86772 0.80343 0.83612 0.78525 1.20254 1.21350 1.19040 1.21112 0.89306 0.94574 1.50733 0.90917 1.19517 0.97351 0.91659 0.96297 1.21450 0.89963 1.00045 1.02271 1.22826 0.97269 0.82038 0.99363 1.87928 1.18934 1.27966 1.94786 1.22901 0.82472 0.97658 0.94541 0.91020 1.22937 0.98165 0.99580 0.98749 1.22911 0.99103 0.97742 0.89835 1.65124 1.27032 1.15501 1.14587 1.21469 0.93784 0.85851 1.03617 1.20416 0.98476 0.99645 0.93129 1.21050 0.98367 0.97540 0.94956 1.21270 0.94395 0.97826 0.99803 1.21171 0.99322 0.99558 0.92227 1.21121 0.96553 0.97406 0.97652 1.20835 0.97618 1.00159 0.86357 1.98383 1.96585 1.88671 1.19525 1.23628 0.89262 0.96810 1.00167 0.92729 0.96563 0.96965 0.92010 0.92078 0.93918 0.93774 0.90350 0.90886 0.93109 0.90151 0.89533 0.88863 0.85273 0.85326 0.84954 0.84709 0.89083 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -2.10 5.52 -26.73 -0.15 -2.25 16 11 C 0.06 1.07 5.81 37.16 0.22 1.29 16 12 O -0.38 -6.39 10.08 -35.23 -0.36 -6.74 16 13 C 0.08 1.14 3.51 -24.87 -0.09 1.05 16 14 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 15 C -0.16 -1.82 6.69 -25.37 -0.17 -1.99 16 16 C 0.03 0.31 6.44 -2.75 -0.02 0.29 16 17 N -0.50 -5.23 5.54 -231.89 -1.28 -6.51 16 18 C 0.08 0.71 5.38 -4.97 -0.03 0.68 16 19 C -0.11 -1.07 3.92 -104.59 -0.41 -1.48 16 20 C -0.10 -0.82 8.47 -39.59 -0.34 -1.16 16 21 C -0.11 -0.90 10.05 -39.58 -0.40 -1.29 16 22 C -0.10 -0.86 10.05 -39.59 -0.40 -1.25 16 23 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 24 C -0.02 -0.23 4.55 -39.50 -0.18 -0.41 16 25 Cl -0.06 -0.63 24.50 -51.86 -1.27 -1.90 16 26 C 0.03 0.36 4.45 -1.90 -0.01 0.35 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 29 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.45 5.56 -51.92 -0.29 0.16 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.61 7.92 -51.93 -0.41 0.20 16 39 H 0.09 0.82 7.07 -51.93 -0.37 0.45 16 40 H 0.13 0.81 7.38 -52.49 -0.39 0.43 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.09 1.15 6.91 -51.93 -0.36 0.79 16 45 H 0.07 0.93 4.61 -51.93 -0.24 0.69 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -31.89 365.61 -11.23 -43.12 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.04 Total: -1.68 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.89 Total: -21.59 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.51 Total: -34.00 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.36 Total: -6.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.27 Total: -1.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.89 -11.23 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.708 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds