Wall clock time and date at job start Tue Mar 31 2020 14:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99765 * 2 1 4 4 H 1.48493 * 109.46893 * 269.99927 * 3 2 1 5 5 H 1.48507 * 109.46735 * 29.99699 * 3 2 1 6 6 H 1.48501 * 109.46973 * 149.99272 * 3 2 1 7 7 C 1.37877 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99841 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46728 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46726 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47017 * 179.97438 * 11 10 9 13 13 C 1.42901 * 114.00178 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.64377 * 328.30563 * 13 12 11 15 15 C 1.54600 * 110.72160 * 91.45384 * 13 12 11 16 16 C 1.53992 * 105.13729 * 140.32132 * 15 13 12 17 17 N 1.47903 * 107.05933 * 1.21929 * 16 15 13 18 18 C 1.46905 * 110.99954 * 214.16043 * 17 16 15 19 19 C 1.50704 * 109.47066 * 75.44339 * 18 17 16 20 20 C 1.38237 * 120.00572 * 266.12169 * 19 18 17 21 21 C 1.38218 * 120.01128 * 180.02562 * 20 19 18 22 22 C 1.38264 * 120.02693 * 359.97438 * 21 20 19 23 23 C 1.38186 * 120.01150 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.00387 * 86.14140 * 19 18 17 25 25 Cl 1.73596 * 120.01433 * 359.95810 * 24 19 18 26 26 C 1.48531 * 105.82121 * 334.67192 * 17 16 15 27 27 H 0.97000 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47211 * 59.99802 * 9 7 2 29 29 H 1.09003 * 109.46591 * 300.00184 * 9 7 2 30 30 H 1.08996 * 109.47201 * 59.99960 * 10 9 7 31 31 H 1.09000 * 109.46828 * 299.99376 * 10 9 7 32 32 H 1.08997 * 109.46864 * 59.99685 * 11 10 9 33 33 H 1.09003 * 109.46687 * 299.99737 * 11 10 9 34 34 H 1.08994 * 110.31204 * 21.39627 * 15 13 12 35 35 H 1.08998 * 110.38877 * 259.27346 * 15 13 12 36 36 H 1.09007 * 109.91398 * 241.86894 * 16 15 13 37 37 H 1.08991 * 109.92042 * 120.57803 * 16 15 13 38 38 H 1.08996 * 109.47100 * 315.44402 * 18 17 16 39 39 H 1.08991 * 109.46937 * 195.44262 * 18 17 16 40 40 H 1.07998 * 119.99354 * 0.04071 * 20 19 18 41 41 H 1.08005 * 119.98200 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.99054 * 179.72401 * 22 21 20 43 43 H 1.08003 * 120.00288 * 180.02562 * 23 22 21 44 44 H 1.08994 * 110.66782 * 157.63723 * 26 17 16 45 45 H 1.09005 * 110.67280 * 280.77632 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6363 0.0009 12 8 6.0281 -3.9835 0.0014 13 6 7.4526 -4.0963 0.0008 14 1 7.9039 -3.2618 -0.5357 15 6 7.9957 -4.1753 1.4462 16 6 9.1294 -5.2162 1.3934 17 7 9.2357 -5.6712 -0.0098 18 6 9.6143 -7.0891 -0.0762 19 6 8.4232 -7.9440 0.2725 20 6 8.2369 -8.3725 1.5735 21 6 7.1448 -9.1570 1.8933 22 6 6.2378 -9.5132 0.9124 23 6 6.4224 -9.0846 -0.3882 24 6 7.5163 -8.3004 -0.7094 25 17 7.7493 -7.7621 -2.3433 26 6 7.8952 -5.4497 -0.6100 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8910 29 1 3.8752 -0.6802 -0.8889 30 1 3.6587 -3.1501 -0.8892 31 1 3.6580 -3.1504 0.8908 32 1 5.9149 -2.1225 0.8909 33 1 5.9149 -2.1224 -0.8891 34 1 7.2113 -4.5044 2.1276 35 1 8.3857 -3.2067 1.7587 36 1 8.8890 -6.0600 2.0403 37 1 10.0677 -4.7594 1.7078 38 1 10.4205 -7.2834 0.6311 39 1 9.9505 -7.3285 -1.0850 40 1 8.9447 -8.0940 2.3402 41 1 7.0000 -9.4919 2.9099 42 1 5.3871 -10.1299 1.1621 43 1 5.7136 -9.3625 -1.1542 44 1 7.9669 -5.3767 -1.6952 45 1 7.2081 -6.2451 -0.3213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:43 Heat of formation + Delta-G solvation = -43.659672 kcal Electronic energy + Delta-G solvation = -24937.136013 eV Core-core repulsion = 21365.431607 eV Total energy + Delta-G solvation = -3571.704405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35239 -39.70551 -38.09800 -37.45757 -35.86897 -34.10770 -33.39082 -31.83941 -30.72156 -29.87220 -28.65414 -26.40947 -24.56362 -23.78627 -23.07617 -22.09420 -21.67147 -21.44501 -18.99050 -18.14516 -18.04240 -17.23023 -16.65507 -16.61338 -16.44128 -16.20679 -15.85828 -15.35924 -14.98306 -14.81942 -14.72564 -14.47609 -14.45570 -14.11139 -13.66882 -13.59675 -13.15867 -12.92328 -12.83942 -12.64683 -12.53570 -12.52359 -12.40979 -12.20793 -12.04724 -11.85274 -11.69943 -11.64174 -11.57127 -11.39243 -11.32559 -10.77810 -10.46110 -9.96646 -9.64657 -9.47991 -8.30476 -6.35890 0.11965 0.24036 1.12634 1.36484 1.38648 1.50789 2.36084 2.47294 2.64252 3.04450 3.20367 3.57777 3.64829 3.74394 3.80608 4.03952 4.04998 4.13580 4.17934 4.24916 4.32254 4.36645 4.47010 4.52539 4.53975 4.61041 4.70396 4.77710 4.80502 4.84159 4.85729 4.90051 4.95204 5.02931 5.06929 5.12293 5.21847 5.32197 5.43278 5.43420 5.53202 5.62425 5.73995 5.82303 5.93513 6.25126 6.35883 6.72034 7.28565 8.86599 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002675 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.525994 B =10464.513548 C =10897.875827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.028 0.972 9 C -0.006 4.006 10 C -0.094 4.094 11 C 0.073 3.927 12 O -0.397 6.397 13 C 0.073 3.927 14 H 0.077 0.923 15 C -0.153 4.153 16 C 0.035 3.965 17 N -0.501 5.501 18 C 0.082 3.918 19 C -0.123 4.123 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.039 4.039 25 Cl -0.073 7.073 26 C 0.035 3.965 27 H 0.267 0.733 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.306 -19.136 3.342 31.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.043 4.043 10 C -0.132 4.132 11 C -0.003 4.003 12 O -0.316 6.316 13 C 0.015 3.985 14 H 0.095 0.905 15 C -0.191 4.191 16 C -0.092 4.092 17 N -0.224 5.224 18 C -0.046 4.046 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.067 4.067 25 Cl -0.044 7.044 26 C -0.092 4.092 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.155 0.845 44 H 0.101 0.899 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.493 -18.834 2.910 31.829 hybrid contribution -1.166 0.371 0.001 1.224 sum 24.327 -18.463 2.910 30.678 Atomic orbital electron populations 1.70077 1.08433 1.28311 1.52462 1.26088 0.95701 1.03779 0.93889 0.85587 0.79580 0.77698 0.79364 1.18999 1.20834 1.16555 1.21461 0.92085 0.93149 1.50835 0.95393 1.19429 0.93974 0.93901 0.97043 1.21262 0.93012 0.97810 1.01072 1.22554 0.94366 0.82825 1.00593 1.87887 1.21270 1.27385 1.95072 1.23154 0.80616 0.98462 0.96298 0.90543 1.22908 0.98443 1.00889 0.96893 1.22962 0.99170 0.97607 0.89494 1.65133 1.25432 1.16751 1.15079 1.21523 0.94153 0.84762 1.04158 1.20539 0.98488 1.00007 0.93496 1.21362 0.98838 0.97090 0.94894 1.21625 0.93916 0.97227 1.00827 1.21477 1.00090 0.99530 0.91839 1.21320 0.96757 0.97944 0.98545 1.21027 0.98450 1.01015 0.86159 1.98370 1.96657 1.88862 1.20478 1.23486 0.90157 0.95793 0.99801 0.92389 0.95519 0.95768 0.93392 0.93280 0.92512 0.92599 0.91570 0.89754 0.92108 0.88263 0.87272 0.89277 0.83074 0.82954 0.83165 0.84533 0.89875 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 2 C 0.00 0.12 5.47 84.65 0.46 0.58 16 3 Si 0.96 44.44 27.47 68.60 1.88 46.32 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -32.07 9.66 25.60 0.25 -31.82 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.29 4.04 29.85 0.12 -0.17 16 10 C -0.09 -3.95 5.52 30.60 0.17 -3.78 16 11 C 0.07 2.45 5.81 71.98 0.42 2.87 16 12 O -0.40 -13.13 10.08 -148.98 -1.50 -14.63 16 13 C 0.07 1.89 3.51 31.80 0.11 2.00 16 14 H 0.08 1.89 7.88 -2.39 -0.02 1.87 16 15 C -0.15 -3.23 6.69 31.47 0.21 -3.01 16 16 C 0.04 0.58 6.44 86.45 0.56 1.13 16 17 N -0.50 -9.49 5.54 -887.57 -4.91 -14.40 16 18 C 0.08 1.28 5.38 85.56 0.46 1.74 16 19 C -0.12 -2.13 3.92 -19.84 -0.08 -2.21 16 20 C -0.10 -1.46 8.47 22.26 0.19 -1.27 16 21 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 22 C -0.11 -1.71 10.05 22.26 0.22 -1.49 16 23 C -0.13 -2.39 9.83 22.29 0.22 -2.17 16 24 C -0.04 -0.79 4.55 22.32 0.10 -0.69 16 25 Cl -0.07 -1.53 24.50 -2.72 -0.07 -1.60 16 26 C 0.04 0.85 4.45 86.65 0.39 1.24 16 27 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.03 1.22 7.20 -2.39 -0.02 1.21 16 29 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 34 H 0.07 1.56 8.07 -2.39 -0.02 1.54 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 0.89 5.56 -2.38 -0.01 0.87 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.20 7.92 -2.39 -0.02 1.18 16 39 H 0.09 1.47 7.07 -2.39 -0.02 1.45 16 40 H 0.15 1.39 7.38 -2.91 -0.02 1.37 16 41 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 44 H 0.08 2.09 6.91 -2.39 -0.02 2.08 16 45 H 0.06 1.53 4.61 -2.38 -0.01 1.52 16 Total: -1.00 -70.12 365.61 0.64 -69.48 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.91 Total: 13.87 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 4.02 Total: -38.43 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -4.61 Total: -75.02 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.50 Total: -14.63 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -70.12 0.64 -69.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.820 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds