Wall clock time and date at job start Tue Mar 31 2020 14:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48503 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47331 * 299.99885 * 3 2 1 6 6 H 1.48502 * 109.47066 * 60.00376 * 3 2 1 7 7 C 1.37882 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46895 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.47215 * 180.02562 * 11 10 9 13 13 C 1.42901 * 114.00062 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.76298 * 26.80369 * 13 12 11 15 15 C 1.55136 * 110.71071 * 263.60687 * 13 12 11 16 16 C 1.54908 * 101.65289 * 205.96375 * 15 13 12 17 17 N 1.47849 * 104.79550 * 37.06744 * 16 15 13 18 18 C 1.46903 * 110.99761 * 213.63517 * 17 16 15 19 19 C 1.50703 * 109.47143 * 285.29008 * 18 17 16 20 20 C 1.38232 * 120.00691 * 104.42995 * 19 18 17 21 21 C 1.38221 * 120.01263 * 180.02562 * 20 19 18 22 22 C 1.38258 * 120.02627 * 359.95897 * 21 20 19 23 23 C 1.38198 * 120.01382 * 0.04107 * 22 21 20 24 24 C 1.38326 * 120.00257 * 284.45080 * 19 18 17 25 25 Cl 1.73596 * 120.01798 * 359.95972 * 24 19 18 26 26 C 1.47438 * 108.56643 * 335.90564 * 17 16 15 27 27 H 0.97003 * 119.99445 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46818 * 60.00006 * 9 7 2 29 29 H 1.08996 * 109.46911 * 300.00057 * 9 7 2 30 30 H 1.09005 * 109.46850 * 60.00429 * 10 9 7 31 31 H 1.08996 * 109.47773 * 300.00001 * 10 9 7 32 32 H 1.09006 * 109.46751 * 60.00156 * 11 10 9 33 33 H 1.09000 * 109.47509 * 300.00383 * 11 10 9 34 34 H 1.09005 * 110.98898 * 324.04982 * 15 13 12 35 35 H 1.08992 * 110.99520 * 87.82901 * 15 13 12 36 36 H 1.08997 * 110.37699 * 278.23596 * 16 15 13 37 37 H 1.09001 * 110.36938 * 155.89464 * 16 15 13 38 38 H 1.08995 * 109.46771 * 165.29037 * 18 17 16 39 39 H 1.09000 * 109.46746 * 45.28630 * 18 17 16 40 40 H 1.07998 * 119.99277 * 0.02595 * 20 19 18 41 41 H 1.08000 * 119.98716 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.99501 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.00267 * 180.25201 * 23 22 21 44 44 H 1.08995 * 109.89153 * 120.39721 * 26 17 16 45 45 H 1.09003 * 109.88844 * 241.42570 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 8 2.4085 -6.0733 0.0018 13 6 1.7939 -7.3634 0.0030 14 1 0.8063 -7.3214 -0.4564 15 6 1.7042 -7.9271 1.4456 16 6 1.6846 -9.4538 1.1843 17 7 2.6044 -9.6536 0.0441 18 6 2.1500 -10.7579 -0.8116 19 6 2.4360 -12.0715 -0.1306 20 6 1.4073 -12.7840 0.4568 21 6 1.6695 -13.9886 1.0819 22 6 2.9606 -14.4820 1.1193 23 6 3.9898 -13.7705 0.5325 24 6 3.7279 -12.5642 -0.0928 25 17 5.0202 -11.6702 -0.8307 26 6 2.6876 -8.3943 -0.7181 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8906 31 1 2.8718 -3.6045 -0.8894 32 1 0.8531 -5.0450 -0.8887 33 1 0.8536 -5.0446 0.8913 34 1 2.5785 -7.6424 2.0310 35 1 0.7863 -7.6023 1.9353 36 1 0.6786 -9.7811 0.9221 37 1 2.0439 -9.9933 2.0606 38 1 2.6779 -10.7201 -1.7644 39 1 1.0781 -10.6649 -0.9860 40 1 0.3986 -12.3994 0.4273 41 1 0.8656 -14.5447 1.5410 42 1 3.1648 -15.4235 1.6076 43 1 4.9975 -14.1581 0.5583 44 1 3.7185 -8.0409 -0.7391 45 1 2.3292 -8.5521 -1.7353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:47 Heat of formation + Delta-G solvation = -37.072188 kcal Electronic energy + Delta-G solvation = -23915.198359 eV Core-core repulsion = 20343.779609 eV Total energy + Delta-G solvation = -3571.418751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12260 -39.04559 -36.97333 -36.57789 -33.97077 -33.03792 -31.47018 -31.10214 -30.08922 -28.59023 -26.51022 -25.59978 -23.09469 -22.95043 -22.05357 -21.13894 -20.88162 -20.07872 -17.48400 -16.94800 -16.38079 -16.17308 -15.94297 -15.62043 -15.17194 -14.67421 -14.50652 -14.38235 -14.13947 -13.72911 -13.56083 -13.42743 -13.06434 -12.63257 -12.43068 -12.17559 -12.07031 -11.92105 -11.72973 -11.60692 -11.50924 -11.36987 -11.28552 -10.90509 -10.86061 -10.77470 -10.53046 -10.35410 -9.82646 -9.45119 -9.32145 -9.16234 -9.09001 -8.98472 -8.52287 -8.35964 -6.01088 -4.03045 0.80117 0.86641 1.97374 3.18562 3.31662 3.38918 3.43966 3.71949 4.00056 4.30893 4.37701 4.47217 4.55542 4.59464 4.62968 4.82905 4.95417 5.03183 5.09922 5.12603 5.18600 5.33521 5.35102 5.38460 5.45462 5.53279 5.69793 5.71555 5.80244 5.84135 5.87040 5.97876 5.99568 6.02692 6.08767 6.19610 6.40250 6.68736 6.72601 6.74254 6.79777 7.09522 7.58107 7.66761 7.78284 7.98713 8.41810 9.03881 9.61078 11.10518 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.001857 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.201852 B =15078.005776 C =15624.407994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.063 3.937 12 O -0.375 6.375 13 C 0.069 3.931 14 H 0.065 0.935 15 C -0.151 4.151 16 C 0.046 3.954 17 N -0.513 5.513 18 C 0.085 3.915 19 C -0.068 4.068 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.012 4.012 25 Cl -0.057 7.057 26 C 0.047 3.953 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -32.491 0.672 32.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.294 6.294 13 C 0.009 3.991 14 H 0.083 0.917 15 C -0.189 4.189 16 C -0.082 4.082 17 N -0.238 5.238 18 C -0.043 4.043 19 C -0.070 4.070 20 C -0.121 4.121 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.039 4.039 25 Cl -0.028 7.028 26 C -0.081 4.081 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.111 0.889 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.619 -32.368 0.766 32.579 hybrid contribution -0.667 1.131 -0.291 1.345 sum 2.952 -31.237 0.476 31.379 Atomic orbital electron populations 1.69978 1.06076 1.26519 1.51038 1.25036 0.94883 0.99350 0.95315 0.86505 0.80166 0.83615 0.77554 1.19660 1.21012 1.21001 1.21268 0.93196 0.90836 1.50353 0.92441 1.19051 0.93921 0.91128 0.97286 1.21652 0.99643 0.91685 1.01556 1.22839 0.92148 0.86999 0.99324 1.87950 1.33905 1.12787 1.94757 1.23217 0.95869 0.84985 0.94991 0.91729 1.23203 1.03336 0.94358 0.98023 1.23006 0.94286 0.96216 0.94651 1.63599 1.47897 1.03691 1.08569 1.21292 0.98998 0.88066 0.95944 1.19654 0.91680 0.96372 0.99261 1.21051 0.98660 0.94963 0.97466 1.21204 0.97038 0.96102 0.99330 1.21115 0.92519 0.99939 0.99265 1.21091 1.00322 0.93688 0.98323 1.20795 0.89330 0.93851 0.99921 1.98388 1.48553 1.75044 1.80782 1.22835 1.02037 0.87743 0.95459 0.93055 0.96530 0.96503 0.92546 0.92560 0.93887 0.93877 0.89507 0.90701 0.93578 0.90160 0.89290 0.93279 0.85455 0.85518 0.85290 0.85051 0.88875 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16 11 C 0.06 1.14 5.78 37.16 0.21 1.35 16 12 O -0.38 -6.34 10.07 -35.23 -0.35 -6.70 16 13 C 0.07 0.90 3.44 -24.91 -0.09 0.82 16 14 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 15 C -0.15 -1.75 6.80 -24.59 -0.17 -1.92 16 16 C 0.05 0.45 6.35 -2.30 -0.01 0.44 16 17 N -0.51 -5.39 5.04 -232.69 -1.17 -6.56 16 18 C 0.08 0.75 4.15 -4.97 -0.02 0.73 16 19 C -0.07 -0.60 5.05 -104.59 -0.53 -1.12 16 20 C -0.10 -0.74 9.67 -39.59 -0.38 -1.12 16 21 C -0.12 -0.74 10.05 -39.58 -0.40 -1.14 16 22 C -0.11 -0.70 10.05 -39.59 -0.40 -1.09 16 23 C -0.12 -0.88 9.83 -39.55 -0.39 -1.27 16 24 C -0.01 -0.11 6.31 -39.50 -0.25 -0.36 16 25 Cl -0.06 -0.56 27.57 -51.86 -1.43 -1.99 16 26 C 0.05 0.54 6.62 -2.84 -0.02 0.53 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.40 7.53 -51.93 -0.39 0.01 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.80 7.28 -51.93 -0.38 0.42 16 39 H 0.05 0.39 7.50 -51.93 -0.39 0.00 16 40 H 0.13 0.72 8.00 -52.49 -0.42 0.30 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 44 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 45 H 0.06 0.62 7.47 -51.93 -0.39 0.24 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -31.16 383.12 -12.01 -43.17 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.40 Total: -4.27 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.13 Total: -19.92 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.44 Total: -32.93 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.35 Total: -6.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.16 -12.01 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.098 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds